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PMID: 8035477 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Functional and biological properties of an avian variant long terminal repeat containing multiple A to G conversions in the U3 sequence.

Journal of virology ·Vol. 68 ·No. 8 ·1994-08-00 ·Pages 4759-67

Felder MP, Laugier D, Yatsula B, Dezélée P, Calothy G, Marx M

Abstract

We previously reported that infection of chicken embryonic neuroretina cells with Rous-associated virus type 1 leads to the frequent occurrence of spliced readthrough transcripts containing viral and cellular sequences. Generation of such chimeric transcripts constitutes a very early step in oncogene transduction. We report, here, the isolation of a c-mil transducing retrovirus, designated IC4, which contains a highly mutated U3 sequence in which 48% of A is converted to G. Functional analysis of this variant U3 indicated that these mutations do not impair viral transcription and replication; however, they abolish functioning of its polyadenylation signal, thus allowing readthrough transcription of downstream cellular sequences. On the basis of these results, we designed a nonreplicative retroviral vector, pIC4Neo, expressing the neomycin resistance (Neo(r)) gene under the control of the IC4 long terminal repeat. Infection of nondividing neuroretina cells with virus produced by a packaging cell line transfected with pIC4Neo occasionally resulted in sustained cell proliferation. Two independent G418-resistant proliferating cultures were found to express hybrid RNAs containing viral and cellular sequences. These sequences were characterized by reverse transcription-PCR and were identified in both cultures, suggesting that proliferation was correlated with a common integration locus. These results indicate that IC4Neo virus functions as a useful insertional mutagen and may allow identification of genes potentially involved in regulation of cell division.

Related Genes
MeSH Terms
Adenine Animals Avian Leukosis Virus/genetics Base Composition Base Sequence Cell Division Cells, Cultured Chick Embryo DNA, Viral/genetics Genetic Vectors Guanine Molecular Sequence Data Mutation Protein Serine-Threonine Kinases/genetics Proto-Oncogene Proteins/genetics Proto-Oncogene Proteins c-raf RNA Splicing Repetitive Sequences, Nucleic Acid Sequence Homology, Nucleic Acid Transduction, Genetic
Chemicals
DNA, Viral Proto-Oncogene Proteins Guanine Protein Serine-Threonine Kinases Proto-Oncogene Proteins c-raf Adenine
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Felder M P
Unité de Recherche Associée 1443 du Centre National de la Recherche Scientifique, Institut Curie, Centre Universitaire, Orsay, France.
Laugier D
Yatsula B
Dezélée P
Calothy G
Marx M
References (49)
49 references, click to expand
  1. Host-specific activation of transcription by tandem repeats from simian virus 40 and Moloney murine sarcoma virus.
    Proc Natl Acad Sci U S A. 1982 Nov;79(21):6453-7 PMID: 6292901
  2. Determination of nucleotide sequences in DNA.
    Science. 1981 Dec 11;214(4526):1205-10 PMID: 7302589
  3. Location and function of retroviral and SV40 sequences that enhance biochemical transformation after microinjection of DNA.
    Cell. 1983 Jul;33(3):705-16 PMID: 6307525
  4. Plasmids for the cloning and expression of full-length double-stranded cDNAs under control of the SV40 early or late gene promoter.
    Nucleic Acids Res. 1983 Oct 25;11(20):7119-36 PMID: 6314276
  5. Identification of transcriptional elements within the long terminal repeat of Rous sarcoma virus.
    Mol Cell Biol. 1983 Oct;3(10):1834-45 PMID: 6316125
  6. Nucleotide sequence of noncoding regions in Rous-associated virus-2: comparisons delineate conserved regions important in replication and oncogenesis.
    J Virol. 1984 Feb;49(2):557-65 PMID: 6319755
  7. Vesicular stomatitis virus defective interfering particles can contain extensive genomic sequence rearrangements and base substitutions.
    Cell. 1984 Apr;36(4):915-24 PMID: 6323026
  8. Multiple enhancer domains in the 3' terminus of the Prague strain of Rous sarcoma virus.
    Nucleic Acids Res. 1984 Aug 24;12(16):6427-42 PMID: 6089114
  9. Two distinct enhancers with different cell specificities coexist in the regulatory region of polyoma.
    Cell. 1984 Dec;39(3 Pt 2):653-62 PMID: 6096017
  10. Transcriptional activity of avian retroviral long terminal repeats directly correlates with enhancer activity.
    J Virol. 1985 Feb;53(2):515-21 PMID: 2982034
  11. c-erbB activation in ALV-induced erythroblastosis: novel RNA processing and promoter insertion result in expression of an amino-truncated EGF receptor.
    Cell. 1985 Jul;41(3):719-26 PMID: 2988784
  12. Nucleotide sequence of HBI, a novel recombinant MC29 derivative with altered pathogenic properties.
    J Virol. 1985 Dec;56(3):969-77 PMID: 2999450
  13. Differential transcription from the long terminal repeats of integrated avian leukosis virus DNA.
    J Virol. 1986 Nov;60(2):497-505 PMID: 3021984
  14. Control of Rous sarcoma virus RNA translation and packaging by the 5' and 3' untranslated sequences.
    J Mol Biol. 1986 Jun 5;189(3):421-34 PMID: 3023627
  15. Genetic determinants of neoplastic diseases induced by a subgroup F avian leukosis virus.
    J Virol. 1987 Apr;61(4):1203-12 PMID: 3029416
  16. At least two nuclear proteins bind specifically to the Rous sarcoma virus long terminal repeat enhancer.
    Mol Cell Biol. 1987 Feb;7(2):787-98 PMID: 3029568
  17. Aberrant splicing events that are induced by proviral integration: implications for myb oncogene activation.
    Proc Natl Acad Sci U S A. 1987 May;84(10):3171-5 PMID: 3033638
  18. Identification of sequences in the long terminal repeat of avian sarcoma virus required for efficient transcription.
    Virology. 1988 Jan;162(1):243-7 PMID: 2827383
  19. The yeast UASG is a transcriptional enhancer in human HeLa cells in the presence of the GAL4 trans-activator.
    Cell. 1988 Jan 29;52(2):169-78 PMID: 2830022
  20. Identification in chickens of an evolutionarily conserved cellular ets-2 gene (c-ets-2) encoding nuclear proteins related to the products of the c-ets proto-oncogene.
    EMBO J. 1988 Mar;7(3):697-705 PMID: 3293999
  21. Activation and transduction of c-mil sequences in chicken neuroretina cells induced to proliferate by infection with avian lymphomatosis virus.
    J Virol. 1988 Dec;62(12):4627-33 PMID: 2846875
  22. A novel oncogene related to c-mil is transduced in chicken neuroretina cells induced to proliferate by infection with an avian lymphomatosis virus.
    EMBO J. 1988 Nov;7(11):3369-73 PMID: 2850163
  23. Biased hypermutation of viral RNA genomes could be due to unwinding/modification of double-stranded RNA.
    Cell. 1989 Feb 10;56(3):331 PMID: 2914324
  24. Avian retroviral vectors derived from avian defective leukemia virus: role of the translational context of the inserted gene on efficiency of the vectors.
    Virology. 1989 Mar;169(1):15-26 PMID: 2564222
  25. A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs.
    Proc Natl Acad Sci U S A. 1989 Apr;86(8):2647-51 PMID: 2704740
  26. Polyadenylation at correct sites in genome RNA is not required for retrovirus replication or genome encapsidation.
    J Virol. 1989 Aug;63(8):3301-6 PMID: 2473216
  27. An antisense mRNA directs the covalent modification of the transcript encoding fibroblast growth factor in Xenopus oocytes.
    Cell. 1989 Nov 17;59(4):687-96 PMID: 2479482
  28. Molecular and biological properties of c-mil transducing retroviruses generated during passage of Rous-associated virus type 1 in chicken neuroretina cells.
    J Virol. 1990 Jan;64(1):231-8 PMID: 2152814
  29. UV-induced DNA damage is an intermediate step in UV-induced expression of human immunodeficiency virus type 1, collagenase, c-fos, and metallothionein.
    Mol Cell Biol. 1989 Nov;9(11):5169-81 PMID: 2557547
  30. A specific base transition occurs on replicating hepatitis delta virus RNA.
    J Virol. 1990 Mar;64(3):1021-7 PMID: 2304136
  31. Broad spectrum of in vivo forward mutations, hypermutations, and mutational hotspots in a retroviral shuttle vector after a single replication cycle: substitutions, frameshifts, and hypermutations.
    Proc Natl Acad Sci U S A. 1990 Aug;87(16):6019-23 PMID: 2201018
  32. Double-stranded RNA unwinding and modifying activity is detected ubiquitously in primary tissues and cell lines.
    Mol Cell Biol. 1990 Oct;10(10):5586-90 PMID: 2398905
  33. Generation of diversity in retroviruses.
    Annu Rev Genet. 1990;24:409-45 PMID: 1708222
  34. Common mechanism of retrovirus activation and transduction of c-mil and c-Rmil in chicken neuroretina cells infected with Rous-associated virus type 1.
    J Virol. 1991 Jul;65(7):3633-40 PMID: 1645786
  35. Substrate specificity of the dsRNA unwinding/modifying activity.
    EMBO J. 1991 Nov;10(11):3523-32 PMID: 1915306
  36. Mechanism of transduction by retroviruses.
    Science. 1992 Feb 14;255(5046):841-5 PMID: 1371365
  37. Packaging cells for avian leukosis virus-based vectors with various host ranges.
    J Virol. 1992 Sep;66(9):5671-6 PMID: 1323718
  38. Influence of sequences in the long terminal repeat and flanking cell DNA on polyadenylation of retroviral transcripts.
    J Virol. 1993 Oct;67(10):6265-9 PMID: 7690423
  39. Occurrence of alternatively spliced leader-delta onc-poly(A) transcripts in chicken neuroretina cells infected with Rous-associated virus type 1: implication in transduction of the c-mil/c-raf and c-Rmil/B-raf oncogenes.
    J Virol. 1993 Nov;67(11):6853-6 PMID: 8411388
  40. Loss of conserved cysteine residues in the attachment (G) glycoprotein of two human respiratory syncytial virus escape mutants that contain multiple A-G substitutions (hypermutations).
    Virology. 1994 Feb;198(2):653-62 PMID: 7507282
  41. A new technique for the assay of infectivity of human adenovirus 5 DNA.
    Virology. 1973 Apr;52(2):456-67 PMID: 4705382
  42. Isolation of high-molecular-weight DNA from mammalian cells.
    Eur J Biochem. 1973 Jul 2;36(1):32-8 PMID: 4200179
  43. Transformation of chick embryo neuroretinal cells by Rous sarcoma virus in vitro: induction of cell proliferation.
    Science. 1974 Aug;185(4152):709-10 PMID: 4367127
  44. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  45. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  46. RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination.
    Biochemistry. 1977 Oct 18;16(21):4743-51 PMID: 911786
  47. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  48. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease.
    Biochemistry. 1979 Nov 27;18(24):5294-9 PMID: 518835
  49. The Rous sarcoma virus long terminal repeat is a strong promoter when introduced into a variety of eukaryotic cells by DNA-mediated transfection.
    Proc Natl Acad Sci U S A. 1982 Nov;79(22):6777-81 PMID: 6294651
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1994-08-00
Pages
4759-67
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC236415
Subset
IM
Databases
GENBANK
X77628, X77629, X77630
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