Abstract
Searches with dsRNA-binding domain profiles detected two copies of the domain in each of RNA helicase A, Drosophila maleless and C. elegans ORF T20G5-11 (of unknown function). RNA helicase A is unusual in being one of the few characterised DEAD/DExH helicases that are active as monomers. Other monomeric DEAD/DExH RNA helicases (p68, NPH-II) have domains that match another RNA-binding motif, the RGG repeat. The DEAD/DExH domain appears to be insufficient on its own to promote helicase activity and additional RNA-binding capacity must be supplied either as domains adjacent to the DEAD/DExH-box or by bound partners as in the eIF-4AB dimer. The presence or absence of extra RNA-binding domains should allow classification of DEAD/DExH proteins as monomeric or multimeric helicases.
MeSH Terms
Amino Acid Sequence
Animals
Chromosomal Proteins, Non-Histone
DNA Helicases
DNA-Binding Proteins
Databases, Factual
Drosophila/enzymology,genetics
Drosophila Proteins
Humans
Male
Molecular Sequence Data
Nuclear Proteins/metabolism
RNA Helicases
RNA Nucleotidyltransferases/metabolism
RNA, Double-Stranded/metabolism
Repetitive Sequences, Nucleic Acid
Sequence Homology, Amino Acid
Transcription Factors/metabolism
Chemicals
Chromosomal Proteins, Non-Histone
DNA-Binding Proteins
Drosophila Proteins
Nuclear Proteins
RNA, Double-Stranded
Transcription Factors
mle protein, Drosophila
RNA Nucleotidyltransferases
DNA Helicases
RNA Helicases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Gibson T J
European Molecular Biology Laboratory, Heidelberg, Germany.
Thompson J D
References (33)
33 references, click to expand
-
D-E-A-D protein family of putative RNA helicases.
Mol Microbiol. 1992 Feb;6(3):283-91
PMID: 1552844
-
Escherichia coli DNA helicases: mechanisms of DNA unwinding.
Mol Microbiol. 1992 Jan;6(1):5-14
PMID: 1310794
-
Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box.
EMBO J. 1992 Jul;11(7):2655-64
PMID: 1628625
-
Amino acid substitution matrices from protein blocks.
Proc Natl Acad Sci U S A. 1992 Nov 15;89(22):10915-9
PMID: 1438297
-
Vaccinia virus RNA helicase: an essential enzyme related to the DE-H family of RNA-dependent NTPases.
Proc Natl Acad Sci U S A. 1992 Nov 15;89(22):10935-9
PMID: 1332061
-
A conserved double-stranded RNA-binding domain.
Proc Natl Acad Sci U S A. 1992 Nov 15;89(22):10979-83
PMID: 1438302
-
A conformational rearrangement in the spliceosome is dependent on PRP16 and ATP hydrolysis.
EMBO J. 1992 Dec;11(13):5033-9
PMID: 1464325
-
SRS--an indexing and retrieval tool for flat file data libraries.
Comput Appl Biosci. 1993 Feb;9(1):49-57
PMID: 8435768
-
RNA recognition: a family matter?
Cell. 1993 Jun 4;73(5):837-40
PMID: 8500177
-
Non-snRNP protein splicing factors.
Biochim Biophys Acta. 1993 Jun 25;1173(3):247-65
PMID: 8318535
-
The EMBL data library.
Nucleic Acids Res. 1993 Jul 1;21(13):2967-71
PMID: 8332519
-
The SWISS-PROT protein sequence data bank, recent developments.
Nucleic Acids Res. 1993 Jul 1;21(13):3093-6
PMID: 8332529
-
Human RNA helicase A is homologous to the maleless protein of Drosophila.
J Biol Chem. 1993 Aug 5;268(22):16822-30
PMID: 8344961
-
The HRIGRXXR region of the DEAD box RNA helicase eukaryotic translation initiation factor 4A is required for RNA binding and ATP hydrolysis.
Mol Cell Biol. 1993 Nov;13(11):6789-98
PMID: 8413273
-
Two RNA-binding motifs in the double-stranded RNA-activated protein kinase, DAI.
Genes Dev. 1992 Dec;6(12B):2478-90
PMID: 1364113
-
KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism.
Trends Biochem Sci. 1993 Sep;18(9):331-3
PMID: 7694397
-
DbpA: a DEAD box protein specifically activated by 23s rRNA.
EMBO J. 1993 Sep;12(9):3619-26
PMID: 8253085
-
Improved sensitivity of profile searches through the use of sequence weights and gap excision.
Comput Appl Biosci. 1994 Feb;10(1):19-29
PMID: 8193951
-
Binding properties of newly identified Xenopus proteins containing dsRNA-binding motifs.
Curr Biol. 1994 Apr 1;4(4):301-14
PMID: 7922339
-
A comprehensive set of sequence analysis programs for the VAX.
Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95
PMID: 6546423
-
Profile analysis: detection of distantly related proteins.
Proc Natl Acad Sci U S A. 1987 Jul;84(13):4355-8
PMID: 3474607
-
A new RNA helicase isolated from HeLa cells that catalytically translocates in the 3' to 5' direction.
J Biol Chem. 1992 Mar 5;267(7):4398-407
PMID: 1537828
-
The product of the Drosophila gene vasa is very similar to eukaryotic initiation factor-4A.
Nature. 1988 Oct 13;335(6191):611-7
PMID: 3140040
-
A protein component of Drosophila polar granules is encoded by vasa and has extensive sequence similarity to ATP-dependent helicases.
Cell. 1988 Nov 18;55(4):577-87
PMID: 3052853
-
An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50S ribosomal subunit assembly.
Nature. 1988 Dec 1;336(6198):496-8
PMID: 2461520
-
RNA helicase activity associated with the human p68 protein.
Nature. 1989 Jun 15;339(6225):562-4
PMID: 2471939
-
Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F.
Mol Cell Biol. 1990 Mar;10(3):1134-44
PMID: 2304461
-
RNA helicase: a novel activity associated with a protein encoded by a positive strand RNA virus.
Nucleic Acids Res. 1990 Dec 11;18(23):7003-6
PMID: 2263459
-
p68 RNA helicase: identification of a nucleolar form and cloning of related genes containing a conserved intron in yeasts.
Mol Cell Biol. 1991 Mar;11(3):1326-33
PMID: 1996094
-
Baker's yeast, the new work horse in protein synthesis studies: analyzing eukaryotic translation initiation.
Bioessays. 1990 Nov;12(11):519-26
PMID: 2085318
-
The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila.
Cell. 1991 Sep 6;66(5):935-47
PMID: 1653648
-
The glycine-rich domain of nucleolin has an unusual supersecondary structure responsible for its RNA-helix-destabilizing properties.
J Biol Chem. 1992 Feb 15;267(5):2955-9
PMID: 1737751
-
The purified yeast pre-mRNA splicing factor PRP2 is an RNA-dependent NTPase.
EMBO J. 1992 Jun;11(6):2319-26
PMID: 1534753