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PMID: 8376935 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

In situ studies of the primary immune response to (4-hydroxy-3-nitrophenyl)acetyl. III. The kinetics of V region mutation and selection in germinal center B cells.

The Journal of experimental medicine ·Vol. 178 ·No. 4 ·1993-10-01 ·Pages 1293-307

Jacob J, Przylepa J, Miller C, Kelsoe G

Abstract

In the murine spleen, germinal centers are the anatomic sites for antigen-driven hypermutation and selection of immunoglobulin (Ig) genes. To detail the kinetics of Ig mutation and selection, 178 VDJ sequences from 16 antigen-induced germinal centers were analyzed. Although germinal centers appeared by day 4, mutation was not observed in germinal center B cells until day 8 postimmunization; thereafter, point mutations favoring asymmetrical transversions accumulated until day 14. During this period, strong phenotypic selection on the mutant B lymphocytes was inferred from progressively biased distributions of mutations within the Ig variable region, the loss of crippling mutations, decreased relative clonal diversity, and increasingly restricted use of canonical gene segments. The period of most intense selection on germinal center B cell populations preceded significant levels of mutation and may represent a physiologically determined restriction on B cells permitted to enter the memory pathway. Noncanonical Ig genes recovered from germinal centers were mostly unmutated although they probably came from antigen-reactive cells. Together, these observations demonstrate that the germinal center microenvironment is rich and temporally complex but may not be constitutive for somatic hypermutation.

MeSH Terms
Animals B-Lymphocytes/cytology,immunology Base Sequence DNA, Single-Stranded Female Genes, Immunoglobulin Immunoglobulin Heavy Chains/genetics,immunology Immunoglobulin Variable Region/genetics,immunology Kinetics Mice Mice, Inbred C57BL Molecular Sequence Data Mutation Nitrophenols/immunology Phenotype Phenylacetates Polymerase Chain Reaction Spleen/cytology,immunology
Chemicals
DNA, Single-Stranded Immunoglobulin Heavy Chains Immunoglobulin Variable Region Nitrophenols Phenylacetates 4-hydroxy-5-nitrophenyl acetic acid
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Jacob J
Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore 21201.
Przylepa J
Miller C
Kelsoe G
References (57)
57 references, click to expand
  1. Surface phenotype of Peyer's patch germinal center cells: implications for the role of germinal centers in B cell differentiation.
    J Immunol. 1982 Dec;129(6):2698-707 PMID: 6982940
  2. Hybrid DNA artifact from PCR of closely related target sequences.
    Nucleic Acids Res. 1989 Jun 12;17(11):4409 PMID: 2740241
  3. Functional anatomy of germinal centers.
    Am J Anat. 1984 Jul;170(3):421-35 PMID: 6383007
  4. Inter- and intraclonal diversity in the antibody response to influenza hemagglutinin.
    J Exp Med. 1985 Apr 1;161(4):687-704 PMID: 3920342
  5. Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications.
    J Mol Evol. 1984;21(1):58-71 PMID: 6442359
  6. Sequence analysis of non-expressed immunoglobulin heavy chain loci in clonally related, somatically mutated hybridoma cells.
    EMBO J. 1985 Dec 16;4(13A):3435-7 PMID: 3937726
  7. Antigen-driven selection of virgin and memory B cells.
    Immunol Rev. 1986 Jun;91:61-85 PMID: 3089914
  8. Clonal recruitment and somatic mutation in the generation of immunological memory to the hapten NP.
    EMBO J. 1986 Oct;5(10):2459-68 PMID: 2430792
  9. Patterns of somatic mutations in immunoglobulin variable genes.
    Genetics. 1987 Jan;115(1):169-76 PMID: 3557109
  10. Evolution of antibody variable region structure during the immune response.
    Immunol Rev. 1987 Apr;96:141-62 PMID: 3298006
  11. Mutation drift and repertoire shift in the maturation of the immune response.
    Immunol Rev. 1987 Apr;96:23-41 PMID: 3298007
  12. Timing, genetic requirements and functional consequences of somatic hypermutation during B-cell development.
    Immunol Rev. 1987 Apr;96:5-22 PMID: 3298009
  13. Hypothesis: somatic hypermutation by gene conversion via the error prone DNA----RNA----DNA information loop.
    Mol Immunol. 1987 Jun;24(6):667-73 PMID: 2443841
  14. Evolutionary and somatic selection of the antibody repertoire in the mouse.
    Science. 1987 Nov 20;238(4830):1088-94 PMID: 3317826
  15. Natural occurrence and origin of somatically mutated memory B cells in mice.
    J Exp Med. 1992 Aug 1;176(2):427-38 PMID: 1500855
  16. In situ studies of the primary immune response to (4-hydroxy-3-nitrophenyl)acetyl. II. A common clonal origin for periarteriolar lymphoid sheath-associated foci and germinal centers.
    J Exp Med. 1992 Sep 1;176(3):679-87 PMID: 1512536
  17. Generation and analysis of random point mutations in an antibody CDR2 sequence: many mutated antibodies lose their ability to bind antigen.
    J Exp Med. 1992 Sep 1;176(3):855-66 PMID: 1512548
  18. Clonal expansion in follicular lymphoma occurs subsequent to antigenic selection.
    J Exp Med. 1992 Oct 1;176(4):1137-48 PMID: 1402658
  19. A limited number of B cell lineages generates the heterogeneity of a secondary immune response.
    J Immunol. 1987 Dec 15;139(12):3996-4006 PMID: 3500977
  20. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase.
    Science. 1988 Jan 29;239(4839):487-91 PMID: 2448875
  21. Antibody engineering for the analysis of affinity maturation of an anti-hapten response.
    EMBO J. 1988 Jul;7(7):1995-2001 PMID: 3138111
  22. The de novo generation of germinal centers is an oligoclonal process.
    Adv Exp Med Biol. 1988;237:245-50 PMID: 3075848
  23. Mechanism of antigen-driven selection in germinal centres.
    Nature. 1989 Dec 21-28;342(6252):929-31 PMID: 2594086
  24. Anti-DNA antibodies from autoimmune mice arise by clonal expansion and somatic mutation.
    J Exp Med. 1990 Jan 1;171(1):265-92 PMID: 2104919
  25. The evolution of B-cell clones.
    Curr Top Microbiol Immunol. 1990;159:37-63 PMID: 2189692
  26. Distribution of mutations around rearranged heavy-chain antibody variable-region genes.
    Mol Cell Biol. 1990 Oct;10(10):5187-96 PMID: 2118991
  27. The efficiency of antibody affinity maturation: can the rate of B-cell division be limiting?
    Immunol Today. 1990 Sep;11(9):305-8 PMID: 2206275
  28. Lack of N regions in fetal and neonatal mouse immunoglobulin V-D-J junctional sequences.
    J Exp Med. 1990 Nov 1;172(5):1377-90 PMID: 1700054
  29. The repertoire of somatic antibody mutants accumulating in the memory compartment after primary immunization is restricted through affinity maturation and mirrors that expressed in the secondary response.
    J Exp Med. 1990 Dec 1;172(6):1681-9 PMID: 2124253
  30. Boundaries of somatic mutation in rearranged immunoglobulin genes: 5' boundary is near the promoter, and 3' boundary is approximately 1 kb from V(D)J gene.
    J Exp Med. 1990 Dec 1;172(6):1717-27 PMID: 2258702
  31. Molecular characterization of single memory B cells.
    Nature. 1991 Apr 11;350(6318):502-5 PMID: 2014051
  32. In situ studies of the primary immune response to (4-hydroxy-3-nitrophenyl)acetyl. I. The architecture and dynamics of responding cell populations.
    J Exp Med. 1991 May 1;173(5):1165-75 PMID: 1902502
  33. Most peripheral B cells in mice are ligand selected.
    J Exp Med. 1991 Jun 1;173(6):1357-71 PMID: 1903427
  34. Mutation in a reporter gene depends on proximity to and transcription of immunoglobulin variable transgenes.
    Proc Natl Acad Sci U S A. 1991 Jun 1;88(11):4902-6 PMID: 1905016
  35. Kinetic maturation of an immune response.
    Nature. 1991 Aug 8;352(6335):530-2 PMID: 1907716
  36. Intraclonal generation of antibody mutants in germinal centres.
    Nature. 1991 Dec 5;354(6352):389-92 PMID: 1956400
  37. Sites of specific B cell activation in primary and secondary responses to T cell-dependent and T cell-independent antigens.
    Eur J Immunol. 1991 Dec;21(12):2951-62 PMID: 1748148
  38. Mutation pattern of immunoglobulin transgenes is compatible with a model of somatic hypermutation in which targeting of the mutator is linked to the direction of DNA replication.
    EMBO J. 1991 Dec;10(13):4331-41 PMID: 1756738
  39. Maturation of the immune response in germinal centers.
    Cell. 1991 Dec 20;67(6):1121-9 PMID: 1760840
  40. Accumulation of somatic mutants in the B cell compartment after primary immunization with a T cell-dependent antigen.
    Eur J Immunol. 1992 Feb;22(2):511-7 PMID: 1537385
  41. Cell selection strategies for making antibodies from variable gene libraries: trapping the memory pool.
    Eur J Immunol. 1992 Mar;22(3):867-70 PMID: 1547829
  42. Selection of B cell clones and memory B cells.
    Semin Immunol. 1992 Feb;4(1):11-7 PMID: 1591365
  43. Extensive somatic mutation in the Ig heavy chain V genes in a late primary anti-hapten immune response.
    Mol Immunol. 1993 Apr;30(6):593-602 PMID: 8487778
  44. Passenger transgenes reveal intrinsic specificity of the antibody hypermutation mechanism: clustering, polarity, and specific hot spots.
    Proc Natl Acad Sci U S A. 1993 Mar 15;90(6):2385-8 PMID: 8460148
  45. Expansion, selection and mutation of antigen-specific B cells in germinal centers.
    Immunol Rev. 1992 Apr;126:47-61 PMID: 1375924
  46. Affinity maturation leads to differential expression of multiple copies of a kappa light-chain transgene.
    Nature. 1993 May 20;363(6426):271-3 PMID: 8487865
  47. Antibody and gamma globulin formation in vitro in hemopoietic organs.
    J Infect Dis. 1956 Mar-Apr;98(2):157-71 PMID: 13319775
  48. Variability in the lambda light chain sequences of mouse antibody.
    Nature. 1970 Dec 12;228(5276):1045-7 PMID: 5483159
  49. Heavy chain variable region contribution to the NPb family of antibodies: somatic mutation evident in a gamma 2a variable region.
    Cell. 1981 Jun;24(3):625-37 PMID: 6788376
  50. Somatic variants of murine immunoglobulin lambda light chains.
    Nature. 1982 Jul 22;298(5872):380-2 PMID: 6283385
  51. Stepwise intraclonal maturation of antibody affinity through somatic hypermutation.
    Proc Natl Acad Sci U S A. 1988 Nov;85(21):8206-10 PMID: 3263647
  52. Fidelity of DNA synthesis by the Thermus aquaticus DNA polymerase.
    Biochemistry. 1988 Aug 9;27(16):6008-13 PMID: 2847780
  53. The immune response to the hapten NP in C57BL/6 mice: insights into the structure of the B-cell repertoire.
    Immunol Rev. 1988 Oct;105:27-43 PMID: 3058576
  54. Might gene conversion be the mechanism of somatic hypermutation of mammalian immunoglobulin genes?
    Trends Genet. 1989 Jan;5(1):4-8 PMID: 2652391
  55. The role of somatic hypermutation in the generation of antibody diversity.
    Science. 1989 Jun 9;244(4909):1152-7 PMID: 2658060
  56. Early onset of somatic mutation in immunoglobulin VH genes during the primary immune response.
    J Exp Med. 1989 Jun 1;169(6):2007-19 PMID: 2499654
  57. mIgM:mIgD ratios on B cells: mean mIgD expression exceeds mIgM by 10-fold on most splenic B cells.
    J Immunol. 1984 Apr;132(4):1712-6 PMID: 6421926
Article Info
Journal
The Journal of experimental medicine
Abbr.
J Exp Med
ISSN
0022-1007
Published
1993-10-01
Pages
1293-307
Language
English
Region
United States
NLM ID
2985109R
PMCID
PMC2191212
Subset
IM
Grants
NIA NIH HHS · AG-08182 · United States
NIAID NIH HHS · AI-24335 · United States
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