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PMID: 8388095 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Processing of recombination intermediates by the RecG and RuvAB proteins of Escherichia coli.

Nucleic acids research ·Vol. 21 ·No. 8 ·1993-04-25 ·Pages 1719-25

Lloyd RG, Sharples GJ

Abstract

The RuvAB, RuvC and RecG proteins of Escherichia coli process intermediates in recombination and DNA repair into mature products. RuvAB and RecG catalyse branch migration of Holliday junctions, while RuvC resolves these structures by nuclease cleavage around the point of strand exchange. The overlap between RuvAB and RecG was investigated using synthetic X- and Y-junctions. RuvAB is a complex of RuvA and RuvB, with RuvA providing the DNA binding subunit and RuvB the ATPase activity that drives branch migration. Both RuvA and RecG form defined complexes with each of the junctions. The gel mobilities of these complexes suggests that the X-junction attracts two tetramers of RuvA, but mainly monomers of RecG. Dissociation of the junction in the presence of ATP requires high levels of RuvAB. RecG is shown to have a much higher specific activity to the extent that very little of this protein would be required to match RuvAB in vivo. Both proteins also dissociate a Y-junction, which is consistent with helicase activity. However, RecG shows no ability to unwind more conventional substrates and the suggestion is made that its helicase activity is directed towards specific DNA structures such as junctions.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/metabolism Base Sequence DNA Helicases/metabolism DNA Repair DNA, Bacterial/metabolism DNA-Binding Proteins/metabolism Escherichia coli/genetics,metabolism Escherichia coli Proteins Kinetics Molecular Sequence Data Protein Binding Recombination, Genetic Sequence Homology, Amino Acid
Chemicals
Bacterial Proteins DNA, Bacterial DNA-Binding Proteins Escherichia coli Proteins RuvB protein, Bacteria RecG protein, E coli Holliday junction DNA helicase, E coli DNA Helicases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Lloyd R G
Department of Genetics, University of Nottingham, Queens Medical Centre, UK.
Sharples G J
References (37)
37 references, click to expand
  1. Stable three-stranded DNA made by RecA protein.
    Proc Natl Acad Sci U S A. 1991 Apr 15;88(8):2984-8 PMID: 2014219
  2. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  3. Formation and resolution of recombination intermediates by E. coli RecA and RuvC proteins.
    Nature. 1991 Dec 19-26;354(6354):506-10 PMID: 1758493
  4. The nucleotide sequence of recG, the distal spo operon gene in Escherichia coli K-12.
    Gene. 1992 Jan 2;110(1):95-9 PMID: 1544582
  5. Interaction of Escherichia coli RuvA and RuvB proteins with synthetic Holliday junctions.
    Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5452-6 PMID: 1608954
  6. ATP-dependent branch migration of Holliday junctions promoted by the RuvA and RuvB proteins of E. coli.
    Cell. 1992 Jun 26;69(7):1171-80 PMID: 1617728
  7. Mutational analysis of a DEAD box RNA helicase: the mammalian translation initiation factor eIF-4A.
    EMBO J. 1992 Jul;11(7):2643-54 PMID: 1378397
  8. Unusual stability of recombination intermediates made by Escherichia coli RecA protein.
    EMBO J. 1992 Jul;11(7):2685-93 PMID: 1628627
  9. Enzymes and molecular mechanisms of genetic recombination.
    Annu Rev Biochem. 1992;61:603-40 PMID: 1497320
  10. Escherichia coli RuvA and RuvB proteins specifically interact with Holliday junctions and promote branch migration.
    Genes Dev. 1992 Nov;6(11):2214-20 PMID: 1427081
  11. Escherichia coli helicase II (urvD gene product) translocates unidirectionally in a 3' to 5' direction.
    J Biol Chem. 1986 Aug 5;261(22):10169-75 PMID: 2942537
  12. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes.
    J Mol Biol. 1986 May 5;189(1):113-30 PMID: 3537305
  13. Resolution of Holliday junctions in vitro requires the Escherichia coli ruvC gene product.
    Proc Natl Acad Sci U S A. 1991 Jul 15;88(14):6063-7 PMID: 1829835
  14. Conjugational recombination in resolvase-deficient ruvC mutants of Escherichia coli K-12 depends on recG.
    J Bacteriol. 1991 Sep;173(17):5414-8 PMID: 1653210
  15. The maleless protein associates with the X chromosome to regulate dosage compensation in Drosophila.
    Cell. 1991 Sep 6;66(5):935-47 PMID: 1653648
  16. Properties of the Escherichia coli RuvA and RuvB proteins involved in DNA repair, recombination and mutagenesis.
    Biochimie. 1991 Apr;73(4):505-7 PMID: 1911951
  17. SOS-inducible DNA repair proteins, RuvA and RuvB, of Escherichia coli: functional interactions between RuvA and RuvB for ATP hydrolysis and renaturation of the cruciform structure in supercoiled DNA.
    Proc Natl Acad Sci U S A. 1991 Oct 1;88(19):8445-9 PMID: 1833759
  18. Molecular organization and nucleotide sequence of the recG locus of Escherichia coli K-12.
    J Bacteriol. 1991 Nov;173(21):6837-43 PMID: 1938888
  19. Resolution of Holliday junctions in Escherichia coli: identification of the ruvC gene product as a 19-kilodalton protein.
    J Bacteriol. 1991 Dec;173(23):7711-5 PMID: 1657895
  20. Nucleotide sequencing of the ruv region of Escherichia coli K-12 reveals a LexA regulated operon encoding two genes.
    Nucleic Acids Res. 1988 Feb 25;16(4):1541-9 PMID: 3279394
  21. A new superfamily of replicative proteins.
    Nature. 1988 May 5;333(6168):22-3 PMID: 3362205
  22. Structure and regulation of the Escherichia coli ruv operon involved in DNA repair and recombination.
    J Bacteriol. 1988 Sep;170(9):4322-9 PMID: 2842314
  23. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.
    Nucleic Acids Res. 1989 Jun 26;17(12):4713-30 PMID: 2546125
  24. Interaction of a four-way junction in DNA with T4 endonuclease VII.
    J Biol Chem. 1990 Jun 5;265(16):9285-9 PMID: 2160971
  25. Molecular and functional analysis of the ruv region of Escherichia coli K-12 reveals three genes involved in DNA repair and recombination.
    Mol Gen Genet. 1990 Apr;221(2):219-26 PMID: 2164626
  26. Genetic analysis of the recG locus of Escherichia coli K-12 and of its role in recombination and DNA repair.
    J Bacteriol. 1991 Feb;173(3):1004-11 PMID: 1846849
  27. Helical interactions in homologous pairing and strand exchange driven by RecA protein.
    J Biol Chem. 1991 Mar 25;266(9):5355-8 PMID: 2005084
  28. Evidence of abortive recombination in ruv mutants of Escherichia coli K12.
    Mol Gen Genet. 1991 Feb;225(2):266-72 PMID: 2005868
  29. Purification and properties of the RuvA and RuvB proteins of Escherichia coli.
    Mol Gen Genet. 1992 Oct;235(1):1-10 PMID: 1435721
  30. ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes.
    Cell. 1992 Dec 11;71(6):939-53 PMID: 1339317
  31. Dissociation of synthetic Holliday junctions by E. coli RecG protein.
    EMBO J. 1993 Jan;12(1):17-22 PMID: 8428576
  32. RuvA and RuvB proteins of Escherichia coli exhibit DNA helicase activity in vitro.
    Proc Natl Acad Sci U S A. 1993 Feb 15;90(4):1315-9 PMID: 8433990
  33. Isolation and characterization of an Escherichia coli ruv mutant which forms nonseptate filaments after low doses of ultraviolet light irradiation.
    J Bacteriol. 1974 Feb;117(2):337-44 PMID: 4590461
  34. Damage to DNA induces expression of the ruv gene of Escherichia coli.
    Mol Gen Genet. 1982;185(2):352-5 PMID: 7045590
  35. Role of RecA protein spiral filaments in genetic recombination.
    Nature. 1984 May 17-23;309(5965):215-9 PMID: 6325943
  36. Effect of ruv mutations on recombination and DNA repair in Escherichia coli K12.
    Mol Gen Genet. 1984;194(1-2):303-9 PMID: 6374379
  37. Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure.
    EMBO J. 1991 Dec;10(13):4381-9 PMID: 1661673
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1993-04-25
Pages
1719-25
Language
English
Region
England
NLM ID
0411011
PMCID
PMC309406
Subset
IM
Grants
Wellcome Trust · United Kingdom
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