Abstract
Three asparagine synthetase genes, asnB, asnH, and asnO (yisO), were predicted from the sequence of the Bacillus subtilis genome. We show here that the three genes are expressed differentially during cell growth. In a rich sporulation medium, expression of asnB was detected only during exponential growth, that of asnH was drastically elevated at the transition between exponential growth and stationary phase, and that of asnO was seen only later in sporulation. In a minimal medium, both asnB and asnH were expressed constitutively during exponential growth and in stationary phase, while the expression of asnO was not detected in either phase. However, when the minimal medium was supplemented with asparagine, only the expression of asnH was partially repressed. Transcription analyses revealed that asnB was possibly cotranscribed with a downstream gene, ytnA, while the asnH gene was transcribed as the fourth gene of an operon comprising yxbB, yxbA, yxnB, asnH, and yxaM. The asnO gene is a monocistronic operon, the expression of which was dependent on one of the sporulation sigma factors, sigma-E. Each of the three genes, carried on a low-copy-number plasmid, complemented the asparagine deficiency of an Escherichia coli strain lacking asparagine synthetases, indicating that all encode an asparagine synthetase. In B. subtilis, deletion of asnO or asnH, singly or in combination, had essentially no effect on growth rates in media with or without asparagine. In contrast, deletion of asnB led to a slow-growth phenotype, even in the presence of asparagine. A strain lacking all three genes still grew without asparagine, albeit very slowly, implying that B. subtilis might have yet another asparagine synthetase, not recognized by sequence analysis. The strains lacking asnO failed to sporulate, indicating an involvement of this gene in sporulation.
MeSH Terms
Amino Acid Sequence
Asparagine/metabolism
Bacillus subtilis/physiology
Carbon-Nitrogen Ligases with Glutamine as Amide-N-Donor/genetics
Escherichia coli/enzymology,genetics
Gene Expression Regulation, Bacterial
Gene Expression Regulation, Enzymologic
Genes, Bacterial
Genetic Complementation Test
Molecular Sequence Data
Mutagenesis
Operon
Sequence Homology, Amino Acid
Spores, Bacterial/enzymology,genetics
Chemicals
Asparagine
Carbon-Nitrogen Ligases with Glutamine as Amide-N-Donor
asparagine synthetase (glutamine-hydrolyzing)
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Yoshida K
Department of Biotechnology, Fukuyama University, Fukuyama, Hiroshima 729-0292, Japan.
[email protected]
Fujita Y
Ehrlich S D
References (22)
22 references, click to expand
-
Catabolic repression of bacterial sporulation.
Proc Natl Acad Sci U S A. 1965 Sep;54(3):704-11
PMID: 4956288
-
Cytochrome bd biosynthesis in Bacillus subtilis: characterization of the cydABCD operon.
J Bacteriol. 1998 Dec;180(24):6571-80
PMID: 9852001
-
Genetic and biomedical studies demonstrating a second gene coding for asparagine synthetase in Escherichia coli.
J Bacteriol. 1980 Apr;142(1):212-20
PMID: 6102982
-
Isolation and properties of a Bacillus subtilis mutant unable to produce fructose-bisphosphatase.
J Bacteriol. 1981 Feb;145(2):760-7
PMID: 6257649
-
Nucleotide sequence of the asnA gene coding for asparagine synthetase of E. coli K-12.
Nucleic Acids Res. 1981 Sep 25;9(18):4669-76
PMID: 6117826
-
Asparagine synthetases of Klebsiella aerogenes: properties and regulation of synthesis.
J Bacteriol. 1982 Sep;151(3):1299-313
PMID: 6125499
-
Efficient isolation of genes by using antibody probes.
Proc Natl Acad Sci U S A. 1983 Mar;80(5):1194-8
PMID: 6219389
-
Low-copy-number plasmid-cloning vectors amplifiable by derepression of an inserted foreign promoter.
Gene. 1984 Apr;28(1):45-54
PMID: 6329915
-
Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
Gene. 1985;33(1):103-19
PMID: 2985470
-
Improved tools for biological sequence comparison.
Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8
PMID: 3162770
-
Expression of human asparagine synthetase in Escherichia coli.
J Biol Chem. 1989 Apr 5;264(10):5503-9
PMID: 2564390
-
A cysteine-histidine-aspartate catalytic triad is involved in glutamine amide transfer function in purF-type glutamine amidotransferases.
J Biol Chem. 1989 Oct 5;264(28):16613-9
PMID: 2674138
-
The N-terminal cysteine of human asparagine synthetase is essential for glutamine-dependent activity.
J Biol Chem. 1989 Nov 25;264(33):19475-7
PMID: 2573597
-
Nucleotide sequence of Escherichia coli asnB and deduced amino acid sequence of asparagine synthetase B.
J Biol Chem. 1990 Aug 5;265(22):12895-902
PMID: 1973930
-
Control of carbon and nitrogen metabolism in Bacillus subtilis.
Annu Rev Microbiol. 1991;45:107-35
PMID: 1741612
-
The sigma factors of Bacillus subtilis.
Microbiol Rev. 1995 Mar;59(1):1-30
PMID: 7708009
-
Expression of kinA and accumulation of sigma H at the onset of sporulation in Bacillus subtilis.
J Bacteriol. 1995 Nov;177(22):6679-83
PMID: 7592452
-
Using CLUSTAL for multiple sequence alignments.
Methods Enzymol. 1996;266:383-402
PMID: 8743695
-
Molecular cloning and expression of two cDNAs encoding asparagine synthetase in soybean.
Plant Mol Biol. 1997 Jan;33(2):301-11
PMID: 9037148
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Nature. 1997 Nov 20;390(6657):249-56
PMID: 9384377
-
A vector for systematic gene inactivation in Bacillus subtilis.
Microbiology. 1998 Nov;144 ( Pt 11):3097-104
PMID: 9846745
-
Selection of Bacillus subtilis mutants impaired in ammonia assimilation.
J Bacteriol. 1980 Feb;141(2):985-8
PMID: 6102555