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PMID: 10698924 Published · ppublish English Journal Article

Crystal structure of the catalytic portion of human HMG-CoA reductase: insights into regulation of activity and catalysis.

The EMBO journal ·Vol. 19 ·No. 5 ·2000-03-01 ·Pages 819-30

Istvan ES, Palnitkar M, Buchanan SK, Deisenhofer J

Abstract

3-hydroxy-3-methylglutaryl-CoA reductase (HMGR) catalyzes the formation of mevalonate, the committed step in the biosynthesis of sterols and isoprenoids. The activity of HMGR is controlled through synthesis, degradation and phosphorylation to maintain the concentration of mevalonate-derived products. In addition to the physiological regulation of HMGR, the human enzyme has been targeted successfully by drugs in the clinical treatment of high serum cholesterol levels. Three crystal structures of the catalytic portion of human HMGR in complexes with HMG-CoA, with HMG and CoA, and with HMG, CoA and NADP(+), provide a detailed view of the enzyme active site. Catalytic portions of human HMGR form tight tetramers. The crystal structure explains the influence of the enzyme's oligomeric state on the activity and suggests a mechanism for cholesterol sensing. The active site architecture of human HMGR is different from that of bacterial HMGR; this may explain why binding of HMGR inhibitors to bacterial HMGRs has not been reported.

MeSH Terms
Amino Acid Sequence Binding Sites Catalysis Enzyme Activation Humans Hydroxymethylglutaryl CoA Reductases/chemistry,metabolism Molecular Sequence Data Protein Conformation Structure-Activity Relationship Substrate Specificity
Chemicals
Hydroxymethylglutaryl CoA Reductases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Istvan E S
Howard Hughes Medical Institute, Department of Biochemistry, University of Texas Southwestern Medical Center at Dallas, TX 75235-9050, USA.
Palnitkar M
Buchanan S K
Deisenhofer J
References (56)
56 references, click to expand
  1. Sequence comparisons reveal two classes of 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    Mol Genet Metab. 1999 Feb;66(2):122-7 PMID: 10068515
  2. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps.
    Acta Crystallogr D Biol Crystallogr. 1999 Apr;55(Pt 4):938-40 PMID: 10089341
  3. Rapid automated molecular replacement by evolutionary search.
    Acta Crystallogr D Biol Crystallogr. 1999 Feb;55(Pt 2):484-91 PMID: 10089360
  4. Enhanced 3-hydroxy-3-methyl-glutaryl coenzyme A reductase activity in human colorectal cancer not expressing low density lipoprotein receptor.
    Anticancer Res. 1999 Jan-Feb;19(1A):451-4 PMID: 10226581
  5. Oligomerization state influences the degradation rate of 3-hydroxy-3-methylglutaryl-CoA reductase.
    J Biol Chem. 1999 Jun 11;274(24):17171-8 PMID: 10358074
  6. Substrate-induced closure of the flap domain in the ternary complex structures provides insights into the mechanism of catalysis by 3-hydroxy-3-methylglutaryl-CoA reductase.
    Proc Natl Acad Sci U S A. 1999 Jun 22;96(13):7167-71 PMID: 10377386
  7. Aminoethylcysteine can replace the function of the essential active site lysine of Pseudomonas mevalonii 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    Biochemistry. 1999 Jul 13;38(28):8879-83 PMID: 10413460
  8. A proteolytic pathway that controls the cholesterol content of membranes, cells, and blood.
    Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11041-8 PMID: 10500120
  9. Sterols regulate cycling of SREBP cleavage-activating protein (SCAP) between endoplasmic reticulum and Golgi.
    Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11235-40 PMID: 10500160
  10. Calculation of the free energy of association for protein complexes.
    Protein Sci. 1992 Jan;1(1):169-81 PMID: 1339024
  11. Immunological evidence for eight spans in the membrane domain of 3-hydroxy-3-methylglutaryl coenzyme A reductase: implications for enzyme degradation in the endoplasmic reticulum.
    J Cell Biol. 1992 Jun;117(5):959-73 PMID: 1374417
  12. Identification of the catalytically important histidine of 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
    J Biol Chem. 1992 Jul 25;267(21):15064-70 PMID: 1634543
  13. Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.
    Proteins. 1991;11(4):281-96 PMID: 1758883
  14. A novel strategy for production of a highly expressed recombinant protein in an active form.
    FEBS Lett. 1991 Dec 16;295(1-3):10-2 PMID: 1765138
  15. Detecting folding motifs and similarities in protein structures.
    Methods Enzymol. 1997;277:525-45 PMID: 18488323
  16. Regulation of the mevalonate pathway.
    Nature. 1990 Feb 1;343(6257):425-30 PMID: 1967820
  17. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  18. Identification of the principal catalytically important acidic residue of 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    J Biol Chem. 1990 Dec 15;265(35):21634-41 PMID: 2123872
  19. Cloning, sequencing, and overexpression of mvaA, which encodes Pseudomonas mevalonii 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    J Bacteriol. 1989 Jun;171(6):2994-3001 PMID: 2656635
  20. Biochemical aspect of HMG CoA reductase inhibitors.
    Adv Enzyme Regul. 1989;28:53-64 PMID: 2696346
  21. Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-26 PMID: 27754618
  22. [33] AMoRe: An automated molecular replacement program package.
    Methods Enzymol. 1997;276:581-594 PMID: 27799116
  23. Purification and properties of the catalytic domain of human 3-hydroxy-3-methylglutaryl-CoA reductase expressed in Escherichia coli.
    Arch Biochem Biophys. 1988 Nov 15;267(1):110-8 PMID: 3058035
  24. In situ determination of the functional size of hepatic 3-hydroxy-3-methylglutaryl-CoA reductase by radiation inactivation analysis.
    Biochim Biophys Acta. 1988 Apr 14;953(3):361-4 PMID: 3355845
  25. Multivalent control of 3-hydroxy-3-methylglutaryl coenzyme A reductase. Mevalonate-derived product inhibits translation of mRNA and accelerates degradation of enzyme.
    J Biol Chem. 1988 Jun 25;263(18):8929-37 PMID: 3379053
  26. Compactin (ML-236B) and related compounds as potential cholesterol-lowering agents that inhibit HMG-CoA reductase.
    J Med Chem. 1985 Apr;28(4):401-5 PMID: 3981532
  27. Mevalonate utilization in Pseudomonas sp. M. Purification and characterization of an inducible 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    J Biol Chem. 1985 Aug 5;260(16):9393-8 PMID: 4019479
  28. Functional size of rat hepatic 3-hydroxy-3-methylglutaryl coenzyme A reductase as determined by radiation inactivation.
    J Biol Chem. 1985 Aug 25;260(18):10278-82 PMID: 4019513
  29. 3-Hydroxy-3-methylglutaryl coenzyme A reductase. Solubilization and purification of a cold-sensitive microsomal enzyme.
    J Biol Chem. 1973 Jul 10;248(13):4731-8 PMID: 4146267
  30. Induction of 3-hydroxy-3-methylglutaryl coenzyme A reductase activity in human fibroblasts incubated with compactin (ML-236B), a competitive inhibitor of the reductase.
    J Biol Chem. 1978 Feb 25;253(4):1121-8 PMID: 624722
  31. pH properties and chemical mechanism of action of 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    Biochemistry. 1981 Feb 17;20(4):887-94 PMID: 6783074
  32. Appearance of crystalloid endoplasmic reticulum in compactin-resistant Chinese hamster cells with a 500-fold increase in 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
    Proc Natl Acad Sci U S A. 1982 Feb;79(4):1185-9 PMID: 6951166
  33. Molecular cloning of 3-hydroxy-3-methylglutaryl coenzyme a reductase and evidence for regulation of its mRNA.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7704-8 PMID: 6961444
  34. Molecular dissection of the role of the membrane domain in the regulated degradation of 3-hydroxy-3-methylglutaryl coenzyme A reductase.
    J Biol Chem. 1995 Aug 11;270(32):19107-13 PMID: 7642576
  35. Protein-protein interactions: a review of protein dimer structures.
    Prog Biophys Mol Biol. 1995;63(1):31-65 PMID: 7746868
  36. Pharmacology of competitive inhibitors of HMG-CoA reductase.
    Pharmacol Res. 1995 Jan;31(1):9-27 PMID: 7784310
  37. Crystal structure of Pseudomonas mevalonii HMG-CoA reductase at 3.0 angstrom resolution.
    Science. 1995 Jun 23;268(5218):1758-62 PMID: 7792601
  38. Catalysis by Syrian hamster 3-hydroxy-3-methylglutaryl-coenzyme A reductase. Proposed roles of histidine 865, glutamate 558, and aspartate 766.
    J Biol Chem. 1994 Apr 15;269(15):11478-83 PMID: 7908908
  39. Modulation of Syrian hamster 3-hydroxy-3-methylglutaryl-CoA reductase activity by phosphorylation. Role of serine 871.
    J Biol Chem. 1994 Mar 4;269(9):6810-4 PMID: 8120043
  40. Release of proteins and peptides from fusion proteins using a recombinant plant virus proteinase.
    Anal Biochem. 1994 Feb 1;216(2):413-7 PMID: 8179197
  41. Phosphorylation of Ser871 impairs the function of His865 of Syrian hamster 3-hydroxy-3-methylglutaryl-CoA reductase.
    J Biol Chem. 1994 Jun 17;269(24):16862-6 PMID: 8207009
  42. The active site of hamster 3-hydroxy-3-methylglutaryl-CoA reductase resides at the subunit interface and incorporates catalytically essential acidic residues from separate polypeptides.
    J Biol Chem. 1994 Jan 14;269(2):1217-21 PMID: 8288583
  43. Importance of mevalonate-derived products in the control of HMG-CoA reductase activity and growth of human lung adenocarcinoma cell line A549.
    Int J Cancer. 1993 Oct 21;55(4):640-5 PMID: 8406993
  44. His865 is the catalytically important histidyl residue of Syrian hamster 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
    J Biol Chem. 1993 Apr 25;268(12):8429-35 PMID: 8473286
  45. How to measure and predict the molar absorption coefficient of a protein.
    Protein Sci. 1995 Nov;4(11):2411-23 PMID: 8563639
  46. The biology of HMG-CoA reductase: the pros of contra-regulation.
    Trends Biochem Sci. 1996 Apr;21(4):140-5 PMID: 8701471
  47. Degradation of 3-hydroxy-3-methylglutaryl-CoA reductase in endoplasmic reticulum membranes is accelerated as a result of increased susceptibility to proteolysis.
    J Biol Chem. 1996 Oct 11;271(41):25630-8 PMID: 8810339
  48. Inhibition of lung tumor cell growth in vitro and mouse lung tumor formation by lovastatin.
    Cancer Lett. 1996 Dec 3;109(1-2):217-22 PMID: 9020924
  49. Results of recent large cholesterol-lowering trials and implications for clinical management.
    Am J Cardiol. 1997 Jun 15;79(12):1663-6 PMID: 9202359
  50. Cholesterol lowering with statin drugs, risk of stroke, and total mortality. An overview of randomized trials.
    JAMA. 1997 Jul 23-30;278(4):313-21 PMID: 9228438
  51. Cholesterol lowering in the management of coronary artery disease: the clinical implications of recent trials.
    Am J Med. 1998 Feb 23;104(2A):2S-5S PMID: 9550499
  52. Inhibition of the 3-hydroxy-3-methylglutaryl-coenzyme A reductase pathway induces p53-independent transcriptional regulation of p21(WAF1/CIP1) in human prostate carcinoma cells.
    J Biol Chem. 1998 Apr 24;273(17):10618-23 PMID: 9553123
  53. Degradation of HMG-CoA reductase in vitro. Cleavage in the membrane domain by a membrane-bound cysteine protease.
    J Biol Chem. 1998 Aug 21;273(34):22037-43 PMID: 9705346
  54. The use of SnB to determine an anomalous scattering substructure.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):799-804 PMID: 9757093
  55. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  56. HMG-CoA reductase guides migrating primordial germ cells.
    Nature. 1998 Dec 3;396(6710):466-9 PMID: 9853754
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2000-03-01
Pages
819-30
Language
English
Region
England
NLM ID
8208664
PMCID
PMC305622
Subset
IM
Databases
PDB
Analysis Services
Analysis Services

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