Abstract
Residual dipolar couplings are useful global structural restraints. The dipolar couplings define the orientation of a vector with respect to the alignment tensor. Although the size of the alignment tensor can be derived from the distribution of the experimental dipolar couplings, its orientation with respect to the coordinate system of the molecule is unknown at the beginning of structure determination. This causes convergence problems in the simulated annealing process. We therefore propose a protocol that translates dipolar couplings into intervector projection angles, which are independent of the orientation of the alignment tensor with respect to the molecule. These restraints can be used during the whole simulated annealing protocol.
MeSH Terms
Amino Acids/chemistry
Animals
Caenorhabditis elegans/chemistry
Caenorhabditis elegans Proteins
Escherichia coli/metabolism
Helminth Proteins/chemistry,metabolism
Insect Proteins/chemistry
Models, Molecular
Muscle Proteins/chemistry,metabolism
Nuclear Magnetic Resonance, Biomolecular/methods
Protein Structure, Tertiary
Chemicals
Amino Acids
Caenorhabditis elegans Proteins
Helminth Proteins
Insect Proteins
Muscle Proteins
Unc-89 protein, C elegans
rhodniin protein, Rhodnius
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Meiler J
Universität Frankfurt, Institut für Organische Chemie, Frankfurt am Main, Germany.
Blomberg N
Nilges M
Griesinger C
References (14)
14 references, click to expand
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