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PMID: 10805131 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A new approach for applying residual dipolar couplings as restraints in structure elucidation.

Journal of biomolecular NMR ·Vol. 16 ·No. 3 ·2000-03-00 ·Pages 245-52

Meiler J, Blomberg N, Nilges M, Griesinger C

Abstract

Residual dipolar couplings are useful global structural restraints. The dipolar couplings define the orientation of a vector with respect to the alignment tensor. Although the size of the alignment tensor can be derived from the distribution of the experimental dipolar couplings, its orientation with respect to the coordinate system of the molecule is unknown at the beginning of structure determination. This causes convergence problems in the simulated annealing process. We therefore propose a protocol that translates dipolar couplings into intervector projection angles, which are independent of the orientation of the alignment tensor with respect to the molecule. These restraints can be used during the whole simulated annealing protocol.

MeSH Terms
Amino Acids/chemistry Animals Caenorhabditis elegans/chemistry Caenorhabditis elegans Proteins Escherichia coli/metabolism Helminth Proteins/chemistry,metabolism Insect Proteins/chemistry Models, Molecular Muscle Proteins/chemistry,metabolism Nuclear Magnetic Resonance, Biomolecular/methods Protein Structure, Tertiary
Chemicals
Amino Acids Caenorhabditis elegans Proteins Helminth Proteins Insect Proteins Muscle Proteins Unc-89 protein, C elegans rhodniin protein, Rhodnius
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Meiler J
Universität Frankfurt, Institut für Organische Chemie, Frankfurt am Main, Germany.
Blomberg N
Nilges M
Griesinger C
References (14)
14 references, click to expand
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Article Info
Journal
Journal of biomolecular NMR
Abbr.
J Biomol NMR
ISSN
0925-2738
Published
2000-03-00
Pages
245-52
Language
English
Region
Netherlands
NLM ID
9110829
Subset
IM
Corrections
ErratumIn
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