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PMID: 10899970 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Review

Gene traps: tools for plant development and genomics.

The Plant cell ·Vol. 12 ·No. 7 ·2000-07-00 ·Pages 1007-20

Springer PS

Abstract

暂无摘要

MeSH Terms
Animals Diptera Gene Expression Genes, Reporter Genome, Plant Mice Plant Development Plants/genetics Promoter Regions, Genetic
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Springer P S
Department of Botany and Plant Sciences, University of California, Riverside 92521-0124, USA. [email protected]
References (99)
99 references, click to expand
  1. A two-element Enhancer-Inhibitor transposon system in Arabidopsis thaliana.
    Mol Gen Genet. 1995 Jun 10;247(5):555-64 PMID: 7603434
  2. Redundant regulation of meristem identity and plant architecture by FRUITFULL, APETALA1 and CAULIFLOWER.
    Development. 2000 Feb;127(4):725-34 PMID: 10648231
  3. Identification of molecular markers of embryogenesis in Arabidopsis thaliana by promoter trapping.
    Plant J. 1994 Jun;5(6):895-903 PMID: 8054995
  4. Systematic reverse genetics of transfer-DNA-tagged lines of Arabidopsis. Isolation of mutations in the cytochrome p450 gene superfamily.
    Plant Physiol. 1998 Nov;118(3):743-50 PMID: 9808718
  5. GFP in plants.
    Trends Genet. 1995 Aug;11(8):328-9 PMID: 8585134
  6. RPE, a plant gene involved in early developmental steps of nematode feeding cells.
    EMBO J. 1998 Dec 1;17(23):6799-811 PMID: 9843485
  7. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
    Nature. 1999 Dec 16;402(6763):769-77 PMID: 10617198
  8. Generation of enhancer trap lines in Arabidopsis and characterization of expression patterns in the inflorescence.
    Plant J. 1999 Mar;17(6):699-707 PMID: 10230066
  9. Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8675-80 PMID: 11038561
  10. Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.
    Development. 1993 Jun;118(2):401-15 PMID: 8223268
  11. Novel GUS expression patterns following transposition of an enhancer trap Ds element in Arabidopsis.
    Mol Gen Genet. 1995 Dec 10;249(4):357-65 PMID: 8552040
  12. Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis.
    Plant Cell. 1999 Dec;11(12):2263-70 PMID: 10590156
  13. Sequence-based identification of T-DNA insertion mutations in Arabidopsis: actin mutants act2-1 and act4-1.
    Plant J. 1995 Oct;8(4):613-22 PMID: 7496405
  14. Regulatory sequences of Arabidopsis drive reporter gene expression in nematode feeding structures.
    Plant Cell. 1997 Dec;9(12):2119-34 PMID: 9437858
  15. A chromosome replication pattern deduced from pericarp phenotypes resulting from movements of the transposable element, modulator, in maize.
    Genetics. 1984 Oct;108(2):471-85 PMID: 17246235
  16. Removal of a cryptic intron and subcellular localization of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly.
    Proc Natl Acad Sci U S A. 1997 Mar 18;94(6):2122-7 PMID: 9122158
  17. Tagging genomic sequences that direct transgene expression by activation of a promoter trap in plants.
    Transgenic Res. 1993 Jan;2(1):33-47 PMID: 8513337
  18. Gene trapping in mouse embryonic stem cells.
    Methods Mol Biol. 1999;97:123-38 PMID: 10443362
  19. Analysis of splice donor and acceptor site function in a transposable gene trap derived from the maize element Activator.
    Mol Gen Genet. 1995 Nov 1;249(1):91-101 PMID: 8552039
  20. The CaMV 35S enhancer contains at least two domains which can confer different developmental and tissue-specific expression patterns.
    EMBO J. 1989 Aug;8(8):2195-202 PMID: 16453896
  21. Characterization and mapping of Ds-GUS-T-DNA lines for targeted insertional mutagenesis.
    Plant J. 1996 Oct;10(4):721-32 PMID: 8893547
  22. Activation tagging in Arabidopsis.
    Plant Physiol. 2000 Apr;122(4):1003-13 PMID: 10759496
  23. Detection of gene regulatory signals in plants revealed by T-DNA-mediated fusions.
    Plant Mol Biol. 1991 Oct;17(4):837-51 PMID: 1655114
  24. Differential mRNA display.
    Methods Cell Biol. 1995;49:431-40 PMID: 8531774
  25. A transposon insertion in the Arabidopsis SSR16 gene causes an embryo-defective lethal mutation.
    Plant J. 1996 Sep;10(3):479-89 PMID: 8811862
  26. The maize transposable element Ds is spliced from RNA.
    Science. 1987 Aug 21;237(4817):916-8 PMID: 3039661
  27. Of fin and fur: mutational analysis of vertebrate embryonic development.
    Genes Dev. 1992 Jan;6(1):1-13 PMID: 1730405
  28. Ten years of enhancer detection: lessons from the fly.
    Plant Cell. 1999 Dec;11(12):2271-81 PMID: 10590157
  29. Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1.
    Science. 1992 Dec 11;258(5089):1773-5 PMID: 1465611
  30. Positional information in root epidermis is defined during embryogenesis and acts in domains with strict boundaries.
    Curr Biol. 1998 Apr 9;8(8):421-30 PMID: 9550701
  31. DNA rearrangement associated with the integration of T-DNA in tobacco: an example for multiple duplications of DNA around the integration target.
    Plant J. 1995 Jan;7(1):157-64 PMID: 7894506
  32. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.
    Plant J. 1995 Sep;8(3):457-63 PMID: 7550382
  33. Site-selected transposon mutagenesis at the hcf106 locus in maize.
    Plant Cell. 1995 Mar;7(3):287-94 PMID: 7734963
  34. Plant Expression of a Bacterial Cytochrome P450 That Catalyzes Activation of a Sulfonylurea Pro-Herbicide.
    Plant Physiol. 1994 Jun;105(2):473-482 PMID: 12232216
  35. High-frequency T-DNA-mediated gene tagging in plants.
    Proc Natl Acad Sci U S A. 1989 Nov;86(21):8467-71 PMID: 2554318
  36. SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis.
    Nature. 2000 Apr 13;404(6779):766-70 PMID: 10783890
  37. Self-sterility in Arabidopsis due to defective pollen tube guidance.
    Science. 1996 Nov 29;274(5292):1535-7 PMID: 8929415
  38. Ds elements on all five Arabidopsis chromosomes and assessment of their utility for transposon tagging.
    Plant J. 1997 Jan;11(1):145-8 PMID: 9025308
  39. Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging.
    Science. 1994 Nov 4;266(5186):789-93 PMID: 7973631
  40. Functional genomics: probing plant gene function and expression with transposons.
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):2021-6 PMID: 9482828
  41. Genetic analyses of the formation of the serrated margin of leaf blades in Arabidopsis: combination of a mutational analysis of leaf morphogenesis with the characterization of a specific marker gene expressed in hydathodes and stipules.
    Mol Gen Genet. 1997 Oct;256(3):231-8 PMID: 9393447
  42. A versatile system for detecting transposition in Arabidopsis.
    Plant J. 1993 Feb;3(2):273-89 PMID: 8220445
  43. The essential Mcm7 protein PROLIFERA is localized to the nucleus of dividing cells during the G(1) phase and is required maternally for early Arabidopsis development.
    Development. 2000 May;127(9):1815-22 PMID: 10751170
  44. Gene trap tagging of PROLIFERA, an essential MCM2-3-5-like gene in Arabidopsis.
    Science. 1995 May 12;268(5212):877-80 PMID: 7754372
  45. Promoter trap markers differentiate structural and positional components of polar development in Arabidopsis.
    Plant Cell. 1997 Oct;9(10):1713-25 PMID: 9368412
  46. Arabidopsis thaliana: a model plant for genome analysis.
    Science. 1998 Oct 23;282(5389):662, 679-82 PMID: 9784120
  47. Preferential transposition of the maize element Activator to linked chromosomal locations in tobacco.
    Plant Cell. 1990 Aug;2(8):701-7 PMID: 1967054
  48. Transposition pattern of the maize element Ds in Arabidopsis thaliana.
    Genetics. 1993 Aug;134(4):1221-9 PMID: 8397137
  49. The Arabidopsis AGL8 MADS box gene is expressed in inflorescence meristems and is negatively regulated by APETALA1.
    Plant Cell. 1995 Nov;7(11):1763-71 PMID: 8535133
  50. P-element-mediated enhancer detection: a versatile method to study development in Drosophila.
    Genes Dev. 1989 Sep;3(9):1288-300 PMID: 2558050
  51. Entrapment vectors: a new tool for mammalian genetics.
    Biotechnology (N Y). 1990 Sep;8(9):827-31 PMID: 1366793
  52. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
    Nature. 1999 Dec 16;402(6763):761-8 PMID: 10617197
  53. Organization and cell differentiation in lateral roots of Arabidopsis thaliana.
    Development. 1997 Jan;124(1):33-44 PMID: 9006065
  54. GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants.
    EMBO J. 1987 Dec 20;6(13):3901-7 PMID: 3327686
  55. P-element-mediated enhancer detection: an efficient method for isolating and characterizing developmentally regulated genes in Drosophila.
    Genes Dev. 1989 Sep;3(9):1301-13 PMID: 2558051
  56. Detection in situ of genomic regulatory elements in Drosophila.
    Proc Natl Acad Sci U S A. 1987 Dec;84(24):9123-7 PMID: 2827169
  57. Stomata patterning on the hypocotyl of Arabidopsis thaliana is controlled by genes involved in the control of root epidermis patterning.
    Dev Biol. 1998 Feb 15;194(2):226-34 PMID: 9501031
  58. Mouse embryonic stem cells and reporter constructs to detect developmentally regulated genes.
    Science. 1989 Apr 28;244(4903):463-5 PMID: 2497519
  59. Transgenes as probes for active chromosomal domains in mouse development.
    Nature. 1988 Jun 30;333(6176):852-5 PMID: 3386733
  60. Delayed activation of the paternal genome during seed development.
    Nature. 2000 Mar 2;404(6773):91-4 PMID: 10716449
  61. Searching for pattern and mutation in the Drosophila genome with a P-lacZ vector.
    Genes Dev. 1989 Sep;3(9):1273-87 PMID: 2558049
  62. Germinal transpositions of the maize element Dissociation from T-DNA loci in tomato.
    Genetics. 1995 Jan;139(1):407-20 PMID: 7705641
  63. Functional tagging of regulatory elements in the plant genome.
    Development. 1991 Aug;112(4):1009-19 PMID: 1935694
  64. LRP1, a gene expressed in lateral and adventitious root primordia of arabidopsis.
    Plant Cell. 1995 Jun;7(6):735-45 PMID: 7647564
  65. TOUSLED participates in apical tissue formation during gynoecium development in Arabidopsis.
    Plant Cell. 1997 Mar;9(3):335-53 PMID: 9090879
  66. P-element-mediated enhancer detection applied to the study of oogenesis in Drosophila.
    Development. 1989 Oct;107(2):189-200 PMID: 2517254
  67. Plant chromosome/marker gene fusion assay for study of normal and truncated T-DNA integration events.
    Mol Gen Genet. 1990 Nov;224(2):248-56 PMID: 2177527
  68. Chasing the dream: plant EST microarrays.
    Curr Opin Plant Biol. 2000 Apr;3(2):108-16 PMID: 10712953
  69. Major chromosomal rearrangements induced by T-DNA transformation in Arabidopsis.
    Genetics. 1998 Jun;149(2):641-50 PMID: 9611180
  70. Movers and shakers: maize transposons as tools for analyzing other plant genomes.
    Curr Opin Cell Biol. 1995 Jun;7(3):406-13 PMID: 7662372
  71. The FRUITFULL MADS-box gene mediates cell differentiation during Arabidopsis fruit development.
    Development. 1998 Apr;125(8):1509-17 PMID: 9502732
  72. Multiple independent defective suppressor-mutator transposon insertions in Arabidopsis: a tool for functional genomics.
    Plant Cell. 1999 Oct;11(10):1841-52 PMID: 10521516
  73. Transposition Pattern of the Maize Element Ac from the Bz-M2(ac) Allele.
    Genetics. 1989 Jun;122(2):447-57 PMID: 17246501
  74. Genetic ablation of root cap cells in Arabidopsis.
    Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12941-6 PMID: 10536027
  75. T-DNA as an insertional mutagen in Arabidopsis.
    Plant Cell. 1999 Dec;11(12):2283-90 PMID: 10590158
  76. Mutations that suppress the thermosensitivity of green fluorescent protein.
    Curr Biol. 1996 Dec 1;6(12):1653-63 PMID: 8994830
  77. Development of an efficient two-element transposon tagging system in Arabidopsis thaliana.
    Mol Gen Genet. 1992 Jun;233(3):449-61 PMID: 1320189
  78. Engineering herbicide resistance in plants by expression of a detoxifying enzyme.
    EMBO J. 1987 Sep;6(9):2513-8 PMID: 16453789
  79. Large-scale analysis of the yeast genome by transposon tagging and gene disruption.
    Nature. 1999 Nov 25;402(6760):413-8 PMID: 10586881
  80. Variable Patterns of Transposition of the Maize Element Activator in Tobacco.
    Plant Cell. 1991 May;3(5):473-482 PMID: 12324601
  81. Identification of plant promoters in situ by T-DNA-mediated transcriptional fusions to the npt-II gene.
    EMBO J. 1986 Aug;5(8):1755-60 PMID: 16453695
  82. Ac transposition from a T-DNA can generate linked and unlinked clusters of insertions in the tomato genome.
    Genetics. 1991 Nov;129(3):833-44 PMID: 1684332
  83. The identification of new genes: gene trapping in transgenic mice.
    Curr Opin Biotechnol. 1993 Dec;4(6):684-9 PMID: 7764465
  84. Lactose genes fused to exogenous promoters in one step using a Mu-lac bacteriophage: in vivo probe for transcriptional control sequences.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4530-3 PMID: 159458
  85. Visual detection of transposition of the maize element activator (ac) in tobacco seedlings.
    Science. 1989 Apr 14;244(4901):204-7 PMID: 17835353
  86. MCM proteins: evolution, properties, and role in DNA replication.
    Biochim Biophys Acta. 1998 Jun 16;1398(2):113-36 PMID: 9689912
  87. A transgene containing lacZ inserted into the dystonia locus is expressed in neural tube.
    Nature. 1988 Sep 29;335(6189):435-7 PMID: 3138544
  88. The HOBBIT gene is required for formation of the root meristem in the Arabidopsis embryo.
    Development. 1998 Feb;125(3):521-31 PMID: 9425146
  89. Gene disruptions using P transposable elements: an integral component of the Drosophila genome project.
    Proc Natl Acad Sci U S A. 1995 Nov 21;92(24):10824-30 PMID: 7479892
  90. Patterns of gene action in plant development revealed by enhancer trap and gene trap transposable elements.
    Genes Dev. 1995 Jul 15;9(14):1797-810 PMID: 7622040
  91. A gene trap approach in mouse embryonic stem cells: the lacZ reported is activated by splicing, reflects endogenous gene expression, and is mutagenic in mice.
    Genes Dev. 1992 Jun;6(6):903-18 PMID: 1592261
  92. The SCARECROW gene regulates an asymmetric cell division that is essential for generating the radial organization of the Arabidopsis root.
    Cell. 1996 Aug 9;86(3):423-33 PMID: 8756724
  93. A chromosomal paracentric inversion associated with T-DNA integration in Arabidopsis.
    Plant J. 1999 Apr;18(2):131-9 PMID: 10363366
  94. T-DNA tagging of a seed coat-specific cryptic promoter in tobacco.
    Plant J. 1994 Oct;6(4):567-77 PMID: 7987415
  95. Genes involved in organ separation in Arabidopsis: an analysis of the cup-shaped cotyledon mutant.
    Plant Cell. 1997 Jun;9(6):841-57 PMID: 9212461
  96. In vivo random beta-glucuronidase gene fusions in Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 1991 Jun 15;88(12):5212-6 PMID: 2052601
  97. T-DNA insertion mutagenesis in Arabidopsis: going back and forth.
    Trends Genet. 1997 Apr;13(4):152-6 PMID: 9097726
  98. Analysis of the frequency of inheritance of transposed Ds elements in Arabidopsis after activation by a CaMV 35S promoter fusion to the Ac transposase gene.
    Mol Gen Genet. 1993 Dec;241(5-6):627-36 PMID: 8264537
  99. Identification of target genes of the homeotic gene Antennapedia by enhancer detection.
    Genes Dev. 1991 Dec;5(12B):2467-80 PMID: 1684334
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2000-07-00
Pages
1007-20
Language
English
Region
England
NLM ID
9208688
PMCID
PMC149045
Subset
IM
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