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PMID: 11238921 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Histone folds mediate selective heterodimerization of yeast TAF(II)25 with TFIID components yTAF(II)47 and yTAF(II)65 and with SAGA component ySPT7.

Molecular and cellular biology ·Vol. 21 ·No. 5 ·2001-03-00 ·Pages 1841-53

Gangloff YG, Sanders SL, Romier C, Kirschner D, Weil PA, Tora L, Davidson I

Abstract

We show that the yeast TFIID (yTFIID) component yTAF(II)47 contains a histone fold domain (HFD) with homology to that previously described for hTAF(II)135. Complementation in vivo indicates that the yTAF(II)47 HFD is necessary and sufficient for vegetative growth. Mutation of highly conserved residues in the alpha1 helix of the yTAF(II)47 HFD results in a temperature-sensitive phenotype which can be suppressed by overexpression of yTAF(II)25, as well as by yTAF(II)40, yTAF(II)19, and yTAF(II)60. In yeast two-hybrid and bacterial coexpression assays, the yTAF(II)47 HFD selectively heterodimerizes with yTAF(II)25, which we show contains an HFD with homology to the hTAF(II)28 family We additionally demonstrate that yTAF(II)65 contains a functional HFD which also selectively heterodimerizes with yTAF(II)25. These results reveal the existence of two novel histone-like pairs in yTFIID. The physical and genetic interactions described here show that the histone-like yTAF(II)s are organized in at least two substructures within TFIID rather than in a single octamer-like structure as previously suggested. Furthermore, our results indicate that ySPT7 has an HFD homologous to that of yTAF(II)47 which selectively heterodimerizes with yTAF(II)25, defining a novel histone-like pair in the SAGA complex.

MeSH Terms
Amino Acid Sequence Cell Division Dimerization Genetic Complementation Test Histones/chemistry Lac Operon Models, Genetic Molecular Sequence Data Phenotype Plasmids/metabolism Protein Folding Protein Structure, Tertiary Recombinant Proteins/metabolism Saccharomyces cerevisiae Proteins Sequence Homology, Amino Acid Temperature Transcription Factor TFIID Transcription Factors/metabolism Transcription Factors, TFII/chemistry,genetics,metabolism Two-Hybrid System Techniques beta-Galactosidase/metabolism
Chemicals
Histones Recombinant Proteins SPT7 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factor TFIID Transcription Factors Transcription Factors, TFII beta-Galactosidase
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Gangloff Y G
Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM/ULP, Illkirch Cédex, C.U. de Strasbourg, France.
Sanders S L
Romier C
Kirschner D
Weil P A
Tora L
Davidson I
References (38)
38 references, click to expand
  1. Yeast TAF(II)90 is required for cell-cycle progression through G2/M but not for general transcription activation.
    Genes Dev. 1996 Sep 15;10(18):2368-80 PMID: 8824595
  2. TFIID-specific yeast TAF40 is essential for the majority of RNA polymerase II-mediated transcription in vivo.
    Genes Dev. 1999 Oct 1;13(19):2484-9 PMID: 10521393
  3. Considerations of transcriptional control mechanisms: do TFIID-core promoter complexes recapitulate nucleosome-like functions?
    Proc Natl Acad Sci U S A. 1997 Aug 19;94(17):8928-35 PMID: 9256411
  4. Yeast TAF(II)145 required for transcription of G1/S cyclin genes and regulated by the cellular growth state.
    Cell. 1997 Aug 22;90(4):607-14 PMID: 9288741
  5. Crystal structure of the nucleosome core particle at 2.8 A resolution.
    Nature. 1997 Sep 18;389(6648):251-60 PMID: 9305837
  6. Function of TAF(II)-containing complex without TBP in transcription by RNA polymerase II.
    Nature. 1998 May 14;393(6681):187-91 PMID: 9603525
  7. Molecular genetics of the RNA polymerase II general transcriptional machinery.
    Microbiol Mol Biol Rev. 1998 Jun;62(2):465-503 PMID: 9618449
  8. Histone-like TAFs within the PCAF histone acetylase complex.
    Cell. 1998 Jul 10;94(1):35-44 PMID: 9674425
  9. A subset of TAF(II)s are integral components of the SAGA complex required for nucleosome acetylation and transcriptional stimulation.
    Cell. 1998 Jul 10;94(1):45-53 PMID: 9674426
  10. Three-dimensional structures of the TAFII-containing complexes TFIID and TFTC.
    Science. 1999 Dec 10;286(5447):2151-3 PMID: 10591645
  11. Three-dimensional structure of the human TFIID-IIA-IIB complex.
    Science. 1999 Dec 10;286(5447):2153-6 PMID: 10591646
  12. The human TFIID components TAF(II)135 and TAF(II)20 and the yeast SAGA components ADA1 and TAF(II)68 heterodimerize to form histone-like pairs.
    Mol Cell Biol. 2000 Jan;20(1):340-51 PMID: 10594036
  13. The histone database: a comprehensive WWW resource for histones and histone fold-containing proteins.
    Nucleic Acids Res. 2000 Jan 1;28(1):320-2 PMID: 10592260
  14. TBP-associated factors (TAFIIs): multiple, selective transcriptional mediators in common complexes.
    Trends Biochem Sci. 2000 Feb;25(2):59-63 PMID: 10664584
  15. Two novel Drosophila TAF(II)s have homology with human TAF(II)30 and are differentially regulated during development.
    Mol Cell Biol. 2000 Mar;20(5):1639-48 PMID: 10669741
  16. Identification of two novel TAF subunits of the yeast Saccharomyces cerevisiae TFIID complex.
    J Biol Chem. 2000 May 5;275(18):13895-900 PMID: 10788514
  17. Identification of a yeast transcription factor IID subunit, TSG2/TAF48.
    J Biol Chem. 2000 Jun 9;275(23):17391-8 PMID: 10751405
  18. Dissecting the interaction network of multiprotein complexes by pairwise coexpression of subunits in E. coli.
    J Mol Biol. 2001 Feb 16;306(2):363-73 PMID: 11237605
  19. Molecular cloning of Drosophila TFIID subunits.
    Nature. 1994 Feb 3;367(6462):484-7 PMID: 7545910
  20. Human TAFII30 is present in a distinct TFIID complex and is required for transcriptional activation by the estrogen receptor.
    Cell. 1994 Oct 7;79(1):107-17 PMID: 7923369
  21. The Saccharomyces cerevisiae SPT7 gene encodes a very acidic protein important for transcription in vivo.
    Genetics. 1995 Feb;139(2):523-36 PMID: 7713415
  22. Structural similarity between TAFs and the heterotetrameric core of the histone octamer.
    Nature. 1996 Mar 28;380(6572):316-22 PMID: 8598927
  23. Differential ligand-dependent interactions between the AF-2 activating domain of nuclear receptors and the putative transcriptional intermediary factors mSUG1 and TIF1.
    EMBO J. 1996 Jan 2;15(1):110-24 PMID: 8598193
  24. Isolation and characterization of TAF25, an essential yeast gene that encodes an RNA polymerase II-specific TATA-binding protein-associated factor.
    J Biol Chem. 1996 Jun 7;271(23):13706-15 PMID: 8662725
  25. Cloning and characterization of human TAF20/15. Multiple interactions suggest a central role in TFIID complex formation.
    J Biol Chem. 1996 Jul 26;271(30):18194-202 PMID: 8663456
  26. Transcription activation in cells lacking TAFIIS.
    Nature. 1996 Sep 12;383(6596):185-8 PMID: 8774886
  27. Biochemistry and structural biology of transcription factor IID (TFIID).
    Annu Rev Biochem. 1996;65:769-99 PMID: 8811195
  28. Human TAF(II)28 and TAF(II)18 interact through a histone fold encoded by atypical evolutionary conserved motifs also found in the SPT3 family.
    Cell. 1998 Jul 24;94(2):239-49 PMID: 9695952
  29. A human SPT3-TAFII31-GCN5-L acetylase complex distinct from transcription factor IID.
    J Biol Chem. 1998 Sep 11;273(37):23781-5 PMID: 9726987
  30. Broad, but not universal, transcriptional requirement for yTAFII17, a histone H3-like TAFII present in TFIID and SAGA.
    Mol Cell. 1998 Nov;2(5):653-61 PMID: 9844637
  31. Histone-like TAFs are essential for transcription in vivo.
    Mol Cell. 1998 Nov;2(5):663-73 PMID: 9844638
  32. The histone H3-like TAF is broadly required for transcription in yeast.
    Mol Cell. 1998 Nov;2(5):675-82 PMID: 9844639
  33. yTAFII61 has a general role in RNA polymerase II transcription and is required by Gcn4p to recruit the SAGA coactivator complex.
    Mol Cell. 1998 Nov;2(5):683-92 PMID: 9844640
  34. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction.
    Mol Cell Biol. 1999 Jan;19(1):86-98 PMID: 9858534
  35. Regulation of gene expression by multiple forms of TFIID and other novel TAFII-containing complexes.
    Exp Cell Res. 1999 Jan 10;246(1):11-9 PMID: 9882510
  36. Identification of TATA-binding protein-free TAFII-containing complex subunits suggests a role in nucleosome acetylation and signal transduction.
    J Biol Chem. 1999 Jun 25;274(26):18285-9 PMID: 10373431
  37. TAF25p, a non-histone-like subunit of TFIID and SAGA complexes, is essential for total mRNA gene transcription in vivo.
    J Biol Chem. 1999 Jul 2;274(27):18847-50 PMID: 10383379
  38. Histone-like transcription factors in eukaryotes.
    Curr Opin Struct Biol. 1997 Feb;7(1):94-102 PMID: 9032065
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
2001-03-00
Pages
1841-53
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC86751
Subset
IM
Grants
NIGMS NIH HHS · R01 GM052461 · United States
NIGMS NIH HHS · R56 GM052461 · United States
NIGMS NIH HHS · GM52461 · United States
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