-
Ligand-induced self-association of the Escherichia coli regulatory protein TyrR.
J Mol Biol. 1994 May 6;238(3):309-18
PMID: 8176727
-
In a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).
Mol Microbiol. 1993 Dec;10(5):903-9
PMID: 7934866
-
The bacterial phosphotransferase system: new frontiers 30 years later.
Mol Microbiol. 1994 Sep;13(5):755-64
PMID: 7815935
-
Effector-mediated stimulation of ATPase activity by the sigma 54-dependent transcriptional activator FHLA from Escherichia coli.
J Bacteriol. 1995 May;177(10):2798-803
PMID: 7751289
-
PhhR, a divergently transcribed activator of the phenylalanine hydroxylase gene cluster of Pseudomonas aeruginosa.
Mol Microbiol. 1996 Nov;22(3):497-507
PMID: 8939433
-
The structure of a domain common to archaebacteria and the homocystinuria disease protein.
Trends Biochem Sci. 1997 Jan;22(1):12-3
PMID: 9020585
-
Modular multidomain phosphoryl transfer proteins of bacteria.
Curr Opin Struct Biol. 1997 Jun;7(3):407-15
PMID: 9204284
-
The flgE gene of Campylobacter coli is under the control of the alternative sigma factor sigma54.
J Bacteriol. 1997 Aug;179(15):4647-53
PMID: 9244248
-
The complete phosphotransferase system in Escherichia coli.
J Mol Microbiol Biotechnol. 2001 Jul;3(3):329-46
PMID: 11361063
-
Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli.
Microbiol Mol Biol Rev. 2001 Sep;65(3):422-44, table of contents
PMID: 11528004
-
Genome sequence of Yersinia pestis, the causative agent of plague.
Nature. 2001 Oct 4;413(6855):523-7
PMID: 11586360
-
Expression of Borrelia burgdorferi OspC and DbpA is controlled by a RpoN-RpoS regulatory pathway.
Proc Natl Acad Sci U S A. 2001 Oct 23;98(22):12724-9
PMID: 11675503
-
A sigma(54)-dependent PTS permease of the mannose family is responsible for sensitivity of Listeria monocytogenes to mesentericin Y105.
Microbiology. 2001 Dec;147(Pt 12):3263-9
PMID: 11739758
-
Structural insights into the regulation of bacterial signalling proteins containing PRDs.
Curr Opin Struct Biol. 2001 Dec;11(6):685-93
PMID: 11751049
-
The Pfam protein families database.
Nucleic Acids Res. 2002 Jan 1;30(1):276-80
PMID: 11752314
-
AAA-ATPase p97/Cdc48p, a cytosolic chaperone required for endoplasmic reticulum-associated protein degradation.
Mol Cell Biol. 2002 Jan;22(2):626-34
PMID: 11756557
-
Role of GlnK in NifL-mediated regulation of NifA activity in Azotobacter vinelandii.
J Bacteriol. 2002 Feb;184(3):812-20
PMID: 11790752
-
Allelic exchange mutagenesis of rpoN encoding RNA-polymerase sigma54 subunit in Helicobacter pylori.
J Infect Chemother. 2001 Sep;7(3):148-55
PMID: 11810576
-
The complete genome sequence of the gastric pathogen Helicobacter pylori.
Nature. 1997 Aug 7;388(6642):539-47
PMID: 9252185
-
The complete genome sequence of Escherichia coli K-12.
Science. 1997 Sep 5;277(5331):1453-62
PMID: 9278503
-
PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox.
Trends Biochem Sci. 1997 Sep;22(9):331-3
PMID: 9301332
-
A conserved region in the sigma54-dependent activator DctD is involved in both binding to RNA polymerase and coupling ATP hydrolysis to activation.
Mol Microbiol. 1997 Oct;26(2):373-86
PMID: 9383161
-
PAS: a multifunctional domain family comes to light.
Curr Biol. 1997 Nov 1;7(11):R674-7
PMID: 9382818
-
The GAF domain: an evolutionary link between diverse phototransducing proteins.
Trends Biochem Sci. 1997 Dec;22(12):458-9
PMID: 9433123
-
In vivo studies on the positive control function of NifA: a conserved hydrophobic amino acid patch at the central domain involved in transcriptional activation.
Mol Microbiol. 1998 Apr;28(1):55-67
PMID: 9593296
-
Antagonistic effects of dual PTS-catalysed phosphorylation on the Bacillus subtilis transcriptional activator LevR.
Mol Microbiol. 1998 Apr;28(2):293-303
PMID: 9622354
-
A bacterial ATP-dependent, enhancer binding protein that activates the housekeeping RNA polymerase.
Genes Dev. 1998 Jun 15;12(12):1884-93
PMID: 9637689
-
Motility of Helicobacter pylori is coordinately regulated by the transcriptional activator FlgR, an NtrC homolog.
J Bacteriol. 1999 Jan;181(2):593-9
PMID: 9882675
-
Control of Herbaspirillum seropedicae NifA activity by ammonium ions and oxygen.
J Bacteriol. 1999 Jan;181(2):681-4
PMID: 9882688
-
Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.
Nature. 1999 Jan 14;397(6715):176-80
PMID: 9923682
-
AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.
Genome Res. 1999 Jan;9(1):27-43
PMID: 9927482
-
Identification of D-proline reductase from Clostridium sticklandii as a selenoenzyme and indications for a catalytically active pyruvoyl group derived from a cysteine residue by cleavage of a proprotein.
J Biol Chem. 1999 Mar 26;274(13):8445-54
PMID: 10085076
-
Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis.
J Bacteriol. 1999 Apr;181(7):2059-66
PMID: 10094682
-
Comparative genomes of Chlamydia pneumoniae and C. trachomatis.
Nat Genet. 1999 Apr;21(4):385-9
PMID: 10192388
-
Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches.
J Mol Biol. 1999 Apr 16;287(5):1023-40
PMID: 10222208
-
PAS domains: internal sensors of oxygen, redox potential, and light.
Microbiol Mol Biol Rev. 1999 Jun;63(2):479-506
PMID: 10357859
-
Solution structure of the DNA-binding domain of NtrC with three alanine substitutions.
J Mol Biol. 1999 Oct 8;292(5):1095-110
PMID: 10512705
-
Identification and mapping of sigma-54 promoters in Chlamydia trachomatis.
J Bacteriol. 2000 Nov;182(21):6239-42
PMID: 11029448
-
The bacterial enhancer-binding protein NtrC as a molecular machine.
Cold Spring Harb Symp Quant Biol. 1998;63:157-66
PMID: 10384279
-
Compilation and analysis of sigma(54)-dependent promoter sequences.
Nucleic Acids Res. 1999 Nov 15;27(22):4305-13
PMID: 10536136
-
Functionality of purified sigma(N) (sigma(54)) and a NifA-like protein from the hyperthermophile Aquifex aeolicus.
J Bacteriol. 2000 Mar;182(6):1616-23
PMID: 10692367
-
Two-component and phosphorelay signal transduction.
Curr Opin Microbiol. 2000 Apr;3(2):165-70
PMID: 10745001
-
The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequences.
FEMS Microbiol Lett. 2000 May 1;186(1):1-9
PMID: 10779705
-
The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor.
J Bacteriol. 2000 Aug;182(15):4129-36
PMID: 10894718
-
Two-component signal transduction.
Annu Rev Biochem. 2000;69:183-215
PMID: 10966457
-
Structure of the GAF domain, a ubiquitous signaling motif and a new class of cyclic GMP receptor.
EMBO J. 2000 Oct 16;19(20):5288-99
PMID: 11032796
-
Signal transduction to the Azotobacter vinelandii NIFL-NIFA regulatory system is influenced directly by interaction with 2-oxoglutarate and the PII regulatory protein.
EMBO J. 2000 Nov 15;19(22):6041-50
PMID: 11080151
-
Concerted inhibition of the transcriptional activation functions of the enhancer-binding protein NIFA by the anti-activator NIFL.
Mol Microbiol. 2001 Jan;39(2):480-93
PMID: 11136467
-
The psp locus of Yersinia enterocolitica is required for virulence and for growth in vitro when the Ysc type III secretion system is produced.
Mol Microbiol. 2001 Jan;39(2):429-44
PMID: 11136463
-
Protein-protein interactions in the complex between the enhancer binding protein NIFA and the sensor NIFL from Azotobacter vinelandii.
J Bacteriol. 2001 Feb;183(4):1359-68
PMID: 11157949
-
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.
DNA Res. 2001 Feb 28;8(1):11-22
PMID: 11258796
-
Transcriptional regulation at a distance in bacteria.
Curr Opin Microbiol. 2001 Apr;4(2):138-44
PMID: 11282468
-
Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.
J Mol Biol. 2001 Apr 13;307(5):1271-92
PMID: 11292341
-
Role of Escherichia coli nitrogen regulatory genes in the nitrogen response of the Azotobacter vinelandii NifL-NifA complex.
J Bacteriol. 2001 May;183(10):3076-82
PMID: 11325935
-
Flavorubredoxin, an inducible catalyst for nitric oxide reduction and detoxification in Escherichia coli.
J Biol Chem. 2002 Mar 8;277(10):8172-7
PMID: 11751865
-
Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586.
J Bacteriol. 2002 Apr;184(7):2005-18
PMID: 11889109
-
Deciphering the action of aromatic effectors on the prokaryotic enhancer-binding protein XylR: a structural model of its N-terminal domain.
Environ Microbiol. 2002 Jan;4(1):29-41
PMID: 11966823
-
Direct interaction of the NifL regulatory protein with the GlnK signal transducer enables the Azotobacter vinelandii NifL-NifA regulatory system to respond to conditions replete for nitrogen.
J Biol Chem. 2002 May 3;277(18):15472-81
PMID: 11856746
-
The central domain of Escherichia coli TyrR is responsible for hexamerization associated with tyrosine-mediated repression of gene expression.
J Biol Chem. 2002 Jun 28;277(26):23186-92
PMID: 11923293
-
Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF.
J Mol Biol. 2002 Jun 28;320(1):23-37
PMID: 12079332
-
Enhancer-dependent transcription in Salmonella enterica Typhimurium: new members of the sigmaN regulon inferred from protein sequence homology and predicted promoter sites.
J Mol Microbiol Biotechnol. 2002 Jul;4(4):367-74
PMID: 12125817
-
Genome sequence of Yersinia pestis KIM.
J Bacteriol. 2002 Aug;184(16):4601-11
PMID: 12142430
-
The NorR protein of Escherichia coli activates expression of the flavorubredoxin gene norV in response to reactive nitrogen species.
J Bacteriol. 2002 Aug;184(16):4640-3
PMID: 12142437
-
Mechanochemical ATPases and transcriptional activation.
Mol Microbiol. 2002 Aug;45(4):895-903
PMID: 12180911
-
FleQ, the major flagellar gene regulator in Pseudomonas aeruginosa, binds to enhancer sites located either upstream or atypically downstream of the RpoN binding site.
J Bacteriol. 2002 Oct;184(19):5251-60
PMID: 12218010
-
Secondary structure and DNA binding by the C-terminal domain of the transcriptional activator NifA from Klebsiella pneumoniae.
Nucleic Acids Res. 2002 Sep 15;30(18):3972-80
PMID: 12235381
-
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157.
Nucleic Acids Res. 2002 Oct 15;30(20):4432-41
PMID: 12384590
-
Genetic regulation of the glyoxylate shunt in Escherichia coli K-12.
J Bacteriol. 1982 Jan;149(1):173-80
PMID: 7033207
-
Identification of a noncatalytic cGMP-binding domain conserved in both the cGMP-stimulated and photoreceptor cyclic nucleotide phosphodiesterases.
Proc Natl Acad Sci U S A. 1990 Jan;87(1):288-92
PMID: 2153290
-
TyrR protein of Escherichia coli and its role as repressor and activator.
Mol Microbiol. 1991 Jul;5(7):1585-92
PMID: 1943694
-
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domains.
J Bacteriol. 1993 Oct;175(19):6067-74
PMID: 8407777
-
Phosphoenolpyruvate:carbohydrate phosphotransferase systems of bacteria.
Microbiol Rev. 1993 Sep;57(3):543-94
PMID: 8246840