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PMID: 14729968 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

The ctf13-30/CTF13 genomic haploinsufficiency modifier screen identifies the yeast chromatin remodeling complex RSC, which is required for the establishment of sister chromatid cohesion.

Molecular and cellular biology ·Vol. 24 ·No. 3 ·2004-02-00 ·Pages 1232-44

Baetz KK, Krogan NJ, Emili A, Greenblatt J, Hieter P

Abstract

The budding yeast centromere-kinetochore complex ensures high-fidelity chromosome segregation in mitosis and meiosis by mediating the attachment and movement of chromosomes along spindle microtubules. To identify new genes and pathways whose function impinges on chromosome transmission, we developed a genomic haploinsufficiency modifier screen and used ctf13-30, encoding a mutant core kinetochore protein, as the reference point. We demonstrate through a series of secondary screens that the genomic modifier screen is a successful method for identifying genes that encode nonessential proteins required for the fidelity of chromosome segregation. One gene isolated in our screen was RSC2, a nonessential subunit of the RSC chromatin remodeling complex. rsc2 mutants have defects in both chromosome segregation and cohesion, but the localization of kinetochore proteins to centromeres is not affected. We determined that, in the absence of RSC2, cohesin could still associate with chromosomes but fails to achieve proper cohesion between sister chromatids, indicating that RSC has a role in the establishment of cohesion. In addition, numerous subunits of RSC were affinity purified and a new component of RSC, Rtt102, was identified. Our work indicates that only a subset of the nonessential RSC subunits function in maintaining chromosome transmission fidelity.

MeSH Terms
Centromere/metabolism Chromatin/metabolism Chromosomal Proteins, Non-Histone/physiology Chromosome Pairing/physiology DNA-Binding Proteins/metabolism Kinetochores Nuclear Proteins/genetics,metabolism Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins/genetics,metabolism,physiology Transcription Factors/metabolism
Chemicals
CBF2 protein, S cerevisiae CSE4 protein, S cerevisiae CTF13 protein, S cerevisiae Chromatin Chromosomal Proteins, Non-Histone Ctf3 protein, S cerevisiae DNA-Binding Proteins Nuclear Proteins RSC complex, S cerevisiae RSC2 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factors
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Baetz Kristin K
Centre for Molecular Medicine and Therapeutics, Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia, Canada V5Z 4H4.
Krogan Nevan J
Emili Andrew
Greenblatt Jack
Hieter Philip
References (61)
61 references, click to expand
  1. Two functionally distinct forms of the RSC nucleosome-remodeling complex, containing essential AT hook, BAH, and bromodomains.
    Mol Cell. 1999 Nov;4(5):715-23 PMID: 10619019
  2. Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry.
    Mol Cell Biol. 2002 Jul;22(13):4723-38 PMID: 12052880
  3. Cohesin ensures bipolar attachment of microtubules to sister centromeres and resists their precocious separation.
    Nat Cell Biol. 2000 Aug;2(8):492-9 PMID: 10934469
  4. Pds5p is an essential chromosomal protein required for both sister chromatid cohesion and condensation in Saccharomyces cerevisiae.
    J Cell Biol. 2000 Oct 30;151(3):613-26 PMID: 11062262
  5. The human SWI/SNF-B chromatin-remodeling complex is related to yeast rsc and localizes at kinetochores of mitotic chromosomes.
    Proc Natl Acad Sci U S A. 2000 Nov 21;97(24):13015-20 PMID: 11078522
  6. Pds5 cooperates with cohesin in maintaining sister chromatid cohesion.
    Curr Biol. 2000 Dec 14-28;10(24):1557-64 PMID: 11137006
  7. Saccharomyces cerevisiae CTF18 and CTF4 are required for sister chromatid cohesion.
    Mol Cell Biol. 2001 May;21(9):3144-58 PMID: 11287619
  8. A Rsc3/Rsc30 zinc cluster dimer reveals novel roles for the chromatin remodeler RSC in gene expression and cell cycle control.
    Mol Cell. 2001 Apr;7(4):741-51 PMID: 11336698
  9. A chromatin remodelling complex that loads cohesin onto human chromosomes.
    Nature. 2002 Aug 29;418(6901):994-8 PMID: 12198550
  10. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.
    Mol Cell Biol. 2002 Oct;22(20):6979-92 PMID: 12242279
  11. HTL1 encodes a novel factor that interacts with the RSC chromatin remodeling complex in Saccharomyces cerevisiae.
    Mol Cell Biol. 2002 Dec;22(23):8165-74 PMID: 12417720
  12. Chromosome cohesion and separation: from men and molecules.
    Curr Biol. 2003 Feb 4;13(3):R104-14 PMID: 12573239
  13. Chromatin proteins are determinants of centromere function.
    Curr Top Microbiol Immunol. 2003;274:23-52 PMID: 12596903
  14. SMC protein complexes and the maintenance of chromosome integrity.
    Curr Top Microbiol Immunol. 2003;274:79-112 PMID: 12596905
  15. The SWI/SNF family of ATP-dependent chromatin remodelers: similar mechanisms for diverse functions.
    Curr Top Microbiol Immunol. 2003;274:143-69 PMID: 12596907
  16. Chromosomal cohesin forms a ring.
    Cell. 2003 Mar 21;112(6):765-77 PMID: 12654244
  17. The yeast RSC chromatin-remodeling complex is required for kinetochore function in chromosome segregation.
    Mol Cell Biol. 2003 May;23(9):3202-15 PMID: 12697820
  18. Functional differences between RSC1 and RSC2, components of a for growth essential chromatin-remodeling complex of Saccharomyces cerevisiae, during the sporulation process.
    FEMS Yeast Res. 2002 May;2(2):87-91 PMID: 12702296
  19. Captivating capture: how microtubules attach to kinetochores.
    Curr Biol. 2003 May 27;13(11):R449-60 PMID: 12781157
  20. Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes.
    Cell. 1982 Jun;29(2):305-17 PMID: 6288253
  21. Visual assay for chromosome ploidy.
    Methods Enzymol. 1987;155:351-72 PMID: 3431466
  22. Chromatin structure of altered yeast centromeres.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):175-9 PMID: 2829168
  23. Unlinked noncomplementation: isolation of new conditional-lethal mutations in each of the tubulin genes of Saccharomyces cerevisiae.
    Genetics. 1988 Jun;119(2):249-60 PMID: 3294100
  24. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  25. Mitotic chromosome transmission fidelity mutants in Saccharomyces cerevisiae.
    Genetics. 1990 Feb;124(2):237-49 PMID: 2407610
  26. A suppressor of a centromere DNA mutation encodes a putative protein kinase (MCK1).
    Genes Dev. 1991 Apr;5(4):549-60 PMID: 2010084
  27. Synthetic dosage lethality.
    Methods Enzymol. 2002;350:316-26 PMID: 12073321
  28. Identification of essential components of the S. cerevisiae kinetochore.
    Cell. 1993 May 21;73(4):761-74 PMID: 8500169
  29. Genetic evidence for functional interactions between actin noncomplementing (Anc) gene products and actin cytoskeletal proteins in Saccharomyces cerevisiae.
    Genetics. 1993 Oct;135(2):275-86 PMID: 8243993
  30. MDS1, a dosage suppressor of an mck1 mutant, encodes a putative yeast homolog of glycogen synthase kinase 3.
    Mol Cell Biol. 1994 Jan;14(1):831-9 PMID: 8264650
  31. Establishing genetic interactions by a synthetic dosage lethality phenotype.
    Genetics. 1996 May;143(1):95-102 PMID: 8722765
  32. Budding yeast SKP1 encodes an evolutionarily conserved kinetochore protein required for cell cycle progression.
    Cell. 1996 Jul 26;86(2):275-85 PMID: 8706132
  33. RSC, an essential, abundant chromatin-remodeling complex.
    Cell. 1996 Dec 27;87(7):1249-60 PMID: 8980231
  34. Sfh1p, a component of a novel chromatin-remodeling complex, is required for cell cycle progression.
    Mol Cell Biol. 1997 Jun;17(6):3323-34 PMID: 9154831
  35. Cohesins: chromosomal proteins that prevent premature separation of sister chromatids.
    Cell. 1997 Oct 3;91(1):35-45 PMID: 9335333
  36. Budding yeast centromere composition and assembly as revealed by in vivo cross-linking.
    Genes Dev. 1997 Dec 15;11(24):3401-12 PMID: 9407032
  37. A mutation in NPS1/STH1, an essential gene encoding a component of a novel chromatin-remodeling complex RSC, alters the chromatin structure of Saccharomyces cerevisiae centromeres.
    Nucleic Acids Res. 1998 Jul 1;26(13):3286-92 PMID: 9628931
  38. Direct interaction between Rsc6 and Rsc8/Swh3,two proteins that are conserved in SWI/SNF-related complexes.
    Nucleic Acids Res. 1998 Aug 15;26(16):3739-45 PMID: 9685490
  39. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
    Yeast. 1998 Jul;14(10):953-61 PMID: 9717241
  40. Cse4p is a component of the core centromere of Saccharomyces cerevisiae.
    Cell. 1998 Sep 4;94(5):607-13 PMID: 9741625
  41. Sth1p, a Saccharomyces cerevisiae Snf2p/Swi2p homolog, is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins.
    Genetics. 1998 Nov;150(3):987-1005 PMID: 9799253
  42. Ctf7p is essential for sister chromatid cohesion and links mitotic chromosome structure to the DNA replication machinery.
    Genes Dev. 1999 Feb 1;13(3):307-19 PMID: 9990855
  43. Yeast cohesin complex requires a conserved protein, Eco1p(Ctf7), to establish cohesion between sister chromatids during DNA replication.
    Genes Dev. 1999 Feb 1;13(3):320-33 PMID: 9990856
  44. Ctf19p: A novel kinetochore protein in Saccharomyces cerevisiae and a potential link between the kinetochore and mitotic spindle.
    J Cell Biol. 1999 Apr 5;145(1):15-28 PMID: 10189365
  45. A putative protein complex consisting of Ctf19, Mcm21, and Okp1 represents a missing link in the budding yeast kinetochore.
    Genes Dev. 1999 May 1;13(9):1140-55 PMID: 10323865
  46. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Science. 1999 Aug 6;285(5429):901-6 PMID: 10436161
  47. Identification of RFC(Ctf18p, Ctf8p, Dcc1p): an alternative RFC complex required for sister chromatid cohesion in S. cerevisiae.
    Mol Cell. 2001 May;7(5):959-70 PMID: 11389843
  48. Transcriptional coregulation by the cell integrity mitogen-activated protein kinase Slt2 and the cell cycle regulator Swi4.
    Mol Cell Biol. 2001 Oct;21(19):6515-28 PMID: 11533240
  49. The many faces of chromatin remodeling: SWItching beyond transcription.
    Cell. 2001 Sep 7;106(5):523-5 PMID: 11551498
  50. Disseminating the genome: joining, resolving, and separating sister chromatids during mitosis and meiosis.
    Annu Rev Genet. 2001;35:673-745 PMID: 11700297
  51. Genes required for ionizing radiation resistance in yeast.
    Nat Genet. 2001 Dec;29(4):426-34 PMID: 11726929
  52. Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science. 2001 Dec 14;294(5550):2364-8 PMID: 11743205
  53. Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance.
    Genetics. 2001 Dec;159(4):1449-65 PMID: 11779788
  54. Spontaneous chromosome loss in Saccharomyces cerevisiae is suppressed by DNA damage checkpoint functions.
    Genetics. 2001 Dec;159(4):1501-9 PMID: 11779792
  55. Chromatin assembly factor I and Hir proteins contribute to building functional kinetochores in S. cerevisiae.
    Genes Dev. 2002 Jan 1;16(1):85-100 PMID: 11782447
  56. Ctf3p, the Mis6 budding yeast homolog, interacts with Mcm22p and Mcm16p at the yeast outer kinetochore.
    Genes Dev. 2002 Jan 1;16(1):101-13 PMID: 11782448
  57. The genome-wide localization of Rsc9, a component of the RSC chromatin-remodeling complex, changes in response to stress.
    Mol Cell. 2002 Mar;9(3):563-73 PMID: 11931764
  58. Genome-wide location and regulated recruitment of the RSC nucleosome-remodeling complex.
    Genes Dev. 2002 Apr 1;16(7):806-19 PMID: 11937489
  59. Simple centromere, complex kinetochore: linking spindle microtubules and centromeric DNA in budding yeast.
    J Cell Biol. 2002 Apr 15;157(2):199-203 PMID: 11956223
  60. RSC2, encoding a component of the RSC nucleosome remodeling complex, is essential for 2 microm plasmid maintenance in Saccharomyces cerevisiae.
    Mol Cell Biol. 2002 Jun;22(12):4218-29 PMID: 12024034
  61. Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins.
    Mol Cell. 2000 Feb;5(2):243-54 PMID: 10882066
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
2004-02-00
Pages
1232-44
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC321452
Subset
IM
Grants
NCI NIH HHS · CA16591 · United States
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