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PMID: 17538013 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Nucleoporins prevent DNA damage accumulation by modulating Ulp1-dependent sumoylation processes.

Molecular biology of the cell ·Vol. 18 ·No. 8 ·2007-08-00 ·Pages 2912-23

Palancade B, Liu X, Garcia-Rubio M, Aguilera A, Zhao X, Doye V

Abstract

Increasing evidences suggest that nuclear pore complexes (NPCs) control different aspects of nuclear metabolism, including transcription, nuclear organization, and DNA repair. We previously established that the Nup84 complex, a major NPC building block, is part of a genetic network involved in DNA repair. Here, we show that double-strand break (DSB) appearance is linked to a shared function of the Nup84 and the Nup60/Mlp1-2 complexes. Mutants within these complexes exhibit similar genetic interactions and alteration in DNA repair processes as mutants of the SUMO-protease Ulp1. Consistently, these nucleoporins are required for maintenance of proper Ulp1 levels at NPCs and for the establishment of the appropriate sumoylation of several cellular proteins, including the DNA repair factor Yku70. Moreover, restoration of nuclear envelope-associated Ulp1 in nucleoporin mutants reestablishes proper sumoylation patterns and suppresses DSB accumulation and genetic interactions with DNA repair genes. Our results thus provide a molecular mechanism that underlies the connection between NPC and genome stability.

MeSH Terms
Cysteine Endopeptidases/metabolism DNA Breaks, Double-Stranded DNA Damage DNA Repair Enzyme Stability Karyopherins/metabolism Mutation/genetics Nuclear Envelope/metabolism Nuclear Pore Complex Proteins/metabolism Nuclear Proteins/metabolism Phenotype Protein Transport RNA-Binding Proteins Saccharomyces cerevisiae/cytology,enzymology Saccharomyces cerevisiae Proteins/metabolism Small Ubiquitin-Related Modifier Proteins/metabolism
Chemicals
Karyopherins MLP1 protein, S cerevisiae Nuclear Pore Complex Proteins Nuclear Proteins RNA-Binding Proteins Saccharomyces cerevisiae Proteins Small Ubiquitin-Related Modifier Proteins Cysteine Endopeptidases Ulp1 protease
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Palancade Benoit
Institut Curie, Centre de Recherche, and Unité Mixte de Recherche 144 Centre National de la Recherche Scientifique, F-75248 Paris, France. [email protected]
Liu Xianpeng
Garcia-Rubio Maria
Aguilera Andrès
Zhao Xiaolan
Doye Valérie
References (51)
51 references, click to expand
  1. SUMO-modified PCNA recruits Srs2 to prevent recombination during S phase.
    Nature. 2005 Jul 21;436(7049):428-33 PMID: 15931174
  2. Simple kinetic relationships and nonspecific competition govern nuclear import rates in vivo.
    J Cell Biol. 2006 Nov 20;175(4):579-93 PMID: 17116750
  3. Pml39, a novel protein of the nuclear periphery required for nuclear retention of improper messenger ribonucleoparticles.
    Mol Biol Cell. 2005 Nov;16(11):5258-68 PMID: 16162818
  4. Telomere tethering at the nuclear periphery is essential for efficient DNA double strand break repair in subtelomeric region.
    J Cell Biol. 2006 Jan 16;172(2):189-99 PMID: 16418532
  5. Regulation of gross chromosomal rearrangements by ubiquitin and SUMO ligases in Saccharomyces cerevisiae.
    Mol Cell Biol. 2006 Feb;26(4):1424-33 PMID: 16449653
  6. Nup-PI: the nucleopore-promoter interaction of genes in yeast.
    Mol Cell. 2006 Feb 3;21(3):379-91 PMID: 16455493
  7. Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila.
    Mol Cell. 2006 Mar 17;21(6):811-23 PMID: 16543150
  8. Genetic analysis connects SLX5 and SLX8 to the SUMO pathway in Saccharomyces cerevisiae.
    Genetics. 2006 Mar;172(3):1499-509 PMID: 16387868
  9. SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope.
    Nature. 2006 Jun 8;441(7094):770-3 PMID: 16760982
  10. Nuclear pore complexes in the organization of silent telomeric chromatin.
    Nature. 2000 Jan 6;403(6765):108-12 PMID: 10638763
  11. Requirement for the SRS2 DNA helicase gene in non-homologous end joining in yeast.
    Nucleic Acids Res. 2000 Jul 15;28(14):2779-83 PMID: 10908335
  12. Requirement for three novel protein complexes in the absence of the Sgs1 DNA helicase in Saccharomyces cerevisiae.
    Genetics. 2001 Jan;157(1):103-18 PMID: 11139495
  13. Modular self-assembly of a Y-shaped multiprotein complex from seven nucleoporins.
    EMBO J. 2002 Feb 1;21(3):387-97 PMID: 11823431
  14. Nuclear architecture and spatial positioning help establish transcriptional states of telomeres in yeast.
    Nat Cell Biol. 2002 Mar;4(3):214-21 PMID: 11862215
  15. Kap121p-mediated nuclear import is required for mating and cellular differentiation in yeast.
    Mol Cell Biol. 2002 Apr;22(8):2544-55 PMID: 11909949
  16. Enhancement of Saccharomyces cerevisiae end-joining efficiency by cell growth stage but not by impairment of recombination.
    Genetics. 2002 Jul;161(3):1015-27 PMID: 12136007
  17. The mRNA export machinery requires the novel Sac3p-Thp1p complex to dock at the nucleoplasmic entrance of the nuclear pores.
    EMBO J. 2002 Nov 1;21(21):5843-52 PMID: 12411502
  18. Esc1, a nuclear periphery protein required for Sir4-based plasmid anchoring and partitioning.
    Mol Cell Biol. 2002 Dec;22(23):8292-301 PMID: 12417731
  19. A point mutation in the Aspergillus nidulans sonBNup98 nuclear pore complex gene causes conditional DNA damage sensitivity.
    Genetics. 2006 Dec;174(4):1881-93 PMID: 17028324
  20. Actively transcribed GAL genes can be physically linked to the nuclear pore by the SAGA chromatin modifying complex.
    J Biol Chem. 2007 Feb 2;282(5):3042-9 PMID: 17158105
  21. The role of karyopherins in the regulated sumoylation of septins.
    J Cell Biol. 2007 Apr 9;177(1):39-49 PMID: 17403926
  22. Myosin-like proteins 1 and 2 are not required for silencing or telomere anchoring, but act in the Tel1 pathway of telomere length control.
    J Struct Biol. 2002 Oct-Dec;140(1-3):79-91 PMID: 12490156
  23. Unconventional tethering of Ulp1 to the transport channel of the nuclear pore complex by karyopherins.
    Nat Cell Biol. 2003 Jan;5(1):21-7 PMID: 12471376
  24. The Ulp1 SUMO isopeptidase: distinct domains required for viability, nuclear envelope localization, and substrate specificity.
    J Cell Biol. 2003 Mar 31;160(7):1069-81 PMID: 12654900
  25. Peering through the pore: nuclear pore complex structure, assembly, and function.
    Dev Cell. 2003 Jun;4(6):775-89 PMID: 12791264
  26. Nuclear retention of unspliced mRNAs in yeast is mediated by perinuclear Mlp1.
    Cell. 2004 Jan 9;116(1):63-73 PMID: 14718167
  27. Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins.
    EMBO J. 2004 Mar 24;23(6):1301-12 PMID: 15014445
  28. A new Saccharomyces cerevisiae strain with a mutant Smt3-deconjugating Ulp1 protein is affected in DNA replication and requires Srs2 and homologous recombination for its viability.
    Mol Cell Biol. 2004 Jun;24(12):5130-43 PMID: 15169880
  29. A proteome-wide approach identifies sumoylated substrate proteins in yeast.
    J Biol Chem. 2004 Oct 1;279(40):41346-51 PMID: 15292183
  30. Global analysis of protein sumoylation in Saccharomyces cerevisiae.
    J Biol Chem. 2004 Oct 29;279(44):45662-8 PMID: 15326169
  31. The small nucleolar RNP protein NOP1 (fibrillarin) is required for pre-rRNA processing in yeast.
    EMBO J. 1991 Mar;10(3):573-83 PMID: 1825809
  32. The NTF2 gene encodes an essential, highly conserved protein that functions in nuclear transport in vivo.
    J Biol Chem. 1996 Aug 2;271(31):18477-84 PMID: 8702493
  33. Mutations in the yeast SRB2 general transcription factor suppress hpr1-induced recombination and show defects in DNA repair.
    Genetics. 1996 Aug;143(4):1533-42 PMID: 8844143
  34. Functional characterization of a Nup159p-containing nuclear pore subcomplex.
    Mol Biol Cell. 1998 Dec;9(12):3475-92 PMID: 9843582
  35. Gene recruitment of the activated INO1 locus to the nuclear membrane.
    PLoS Biol. 2004 Nov;2(11):e342 PMID: 15455074
  36. Mlp-dependent anchorage and stabilization of a desumoylating enzyme is required to prevent clonal lethality.
    J Cell Biol. 2004 Nov 22;167(4):605-11 PMID: 15557117
  37. Identification of sumoylated proteins by systematic immunoprecipitation of the budding yeast proteome.
    Mol Cell Proteomics. 2005 Jan;4(1):73-83 PMID: 15596868
  38. Defining the SUMO-modified proteome by multiple approaches in Saccharomyces cerevisiae.
    J Biol Chem. 2005 Feb 11;280(6):4102-10 PMID: 15590687
  39. Genetic network interactions among replication, repair and nuclear pore deficiencies in yeast.
    DNA Repair (Amst). 2005 Apr 4;4(4):459-68 PMID: 15725626
  40. A proteomic strategy for gaining insights into protein sumoylation in yeast.
    Mol Cell Proteomics. 2005 Mar;4(3):246-54 PMID: 15542864
  41. A SUMO ligase is part of a nuclear multiprotein complex that affects DNA repair and chromosomal organization.
    Proc Natl Acad Sci U S A. 2005 Mar 29;102(13):4777-82 PMID: 15738391
  42. Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation.
    Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5749-54 PMID: 15817685
  43. The yeast chromatin remodeler RSC complex facilitates end joining repair of DNA double-strand breaks.
    Mol Cell Biol. 2005 May;25(10):3934-44 PMID: 15870268
  44. Developmentally induced changes in transcriptional program alter spatial organization across chromosomes.
    Genes Dev. 2005 May 15;19(10):1188-98 PMID: 15905407
  45. Defects in SUMO (small ubiquitin-related modifier) conjugation and deconjugation alter cell sensitivity to DNA topoisomerase I-induced DNA damage.
    J Biol Chem. 2005 Jun 24;280(25):23566-75 PMID: 15817450
  46. Localization of checkpoint and repair proteins in eukaryotes.
    Biochimie. 2005 Jul;87(7):579-89 PMID: 15989975
  47. Nuclear pore association confers optimal expression levels for an inducible yeast gene.
    Nature. 2006 Jun 8;441(7094):774-8 PMID: 16760983
  48. Cotranscriptional recruitment to the mRNA export receptor Mex67p contributes to nuclear pore anchoring of activated genes.
    Mol Cell Biol. 2006 Nov;26(21):7858-70 PMID: 16954382
  49. Control of Rad52 recombination activity by double-strand break-induced SUMO modification.
    Nat Cell Biol. 2006 Nov;8(11):1284-90 PMID: 17013376
  50. Purification of the yeast Slx5-Slx8 protein complex and characterization of its DNA-binding activity.
    Nucleic Acids Res. 2006;34(19):5541-51 PMID: 17020915
  51. Interactions between Mad1p and the nuclear transport machinery in the yeast Saccharomyces cerevisiae.
    Mol Biol Cell. 2005 Sep;16(9):4362-74 PMID: 16000377
Article Info
Journal
Molecular biology of the cell
Abbr.
Mol Biol Cell
ISSN
1059-1524
Published
2007-08-00
Epub
2007-00-30
Pages
2912-23
Language
English
Region
United States
NLM ID
9201390
PMCID
PMC1949349
Subset
IM
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