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PMID: 1766432 Published · ppublish English Journal Article

The gene for a halophilic glutamate dehydrogenase: sequence, transcription analysis and phylogenetic implications.

Molecular & general genetics : MGG ·Vol. 230 ·No. 3 ·1991-12-00 ·Pages 345-52

Benachenhou N, Baldacci G

Abstract

We have isolated and sequenced the gene for a putative NADP-dependent glutamate dehydrogenase from the extremely halophilic archaebacterium Halobacterium salinarium. This gene is transcribed as a unique RNA molecule of about 1700 nucleotides. The 5' end of the transcript contains characteristic consensus transcription initiation and promoter sequences observed in halophilic archaebacteria. The encoded polypeptide, with a predicted length of 435 amino acids, shows significant overall homology and conservation of functional domains when compared with different eubacterial and eukaryotic glutamate dehydrogenases. Surprisingly, the archaebacterial protein shares a larger number of identical amino acid residues with homologous polypeptides from higher eukaryotes than with those from unicellular eukaryotes and eubacteria.

Related Genes
MeSH Terms
Amino Acid Sequence Amino Acids/analysis Base Sequence Codon/genetics Glutamate Dehydrogenase/chemistry,genetics,metabolism Halobacterium/enzymology,genetics Molecular Sequence Data NADP/metabolism Phylogeny Protein Conformation Transcription, Genetic
Chemicals
Amino Acids Codon NADP Glutamate Dehydrogenase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Benachenhou N
Institut de Génétique et Microbiologie, Université Paris-Sud, Orsay, France.
Baldacci G
References (36)
36 references, click to expand
  1. Relatedness of archaebacterial RNA polymerase core subunits to their eubacterial and eukaryotic equivalents.
    Nucleic Acids Res. 1988 Aug 25;16(16):8113-28 PMID: 2843811
  2. Salt-dependent properties of proteins from extremely halophilic bacteria.
    Bacteriol Rev. 1974 Sep;38(3):272-90 PMID: 4607500
  3. Kinetic mechanism of Halobacterium halobium NAD+-glutamate dehydrogenase.
    Biochim Biophys Acta. 1989 Feb 24;990(2):150-5 PMID: 2917175
  4. Gene structure, organization, and expression in archaebacteria.
    Crit Rev Microbiol. 1989;16(4):287-338 PMID: 2467783
  5. Structural studies of halophilic proteins, ribosomes, and organelles of bacteria adapted to extreme salt concentrations.
    Annu Rev Biophys Biophys Chem. 1987;16:69-92 PMID: 3109447
  6. HMf, a DNA-binding protein isolated from the hyperthermophilic archaeon Methanothermus fervidus, is most closely related to histones.
    Proc Natl Acad Sci U S A. 1990 Aug;87(15):5788-91 PMID: 2377617
  7. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters.
    Nucleic Acids Res. 1988 Jan 11;16(1):1-19 PMID: 2829113
  8. Nucleotide sequence and regulation of expression of the Aspergillus nidulans gdhA gene encoding NADP dependent glutamate dehydrogenase.
    Mol Gen Genet. 1989 Jul;218(1):105-11 PMID: 2550758
  9. Hydrophobic chromatography and fractionation of enzymes from extremely halophilic bacteria using decreasing concentration gradients of ammonium sulfate.
    Biochemistry. 1976 Jun 1;15(11):2383-7 PMID: 1276145
  10. Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A. 1988 Apr;85(8):2444-8 PMID: 3162770
  11. Localisation of a strongly conserved section of coding sequence in glutamate dehydrogenase genes.
    FEBS Lett. 1982 Oct 4;147(1):21-5 PMID: 6754449
  12. Purification and characterization of glutamate dehydrogenase from Halobacterium of the Dead Sea.
    Biochemistry. 1978 Sep 19;17(19):4004-10 PMID: 708691
  13. Hydrophobic cluster analysis: an efficient new way to compare and analyse amino acid sequences.
    FEBS Lett. 1987 Nov 16;224(1):149-55 PMID: 3678489
  14. Secondary structure predictions for the NAD-specific glutamate dehydrogenase of Neurospora crassa.
    J Biol Chem. 1980 Aug 25;255(16):8001-4 PMID: 6447152
  15. The halo-opsin gene. II. Sequence, primary structure of halorhodopsin and comparison with bacteriorhodopsin.
    EMBO J. 1987 Jan;6(1):265-73 PMID: 15981336
  16. Nucleotide sequence of yeast GDH1 encoding nicotinamide adenine dinucleotide phosphate-dependent glutamate dehydrogenase.
    J Biol Chem. 1985 Jul 15;260(14):8502-8 PMID: 2989290
  17. The coenzyme-binding domains of glutamate dehydrogenases.
    Nature. 1974 Dec 13;252(5484):542-6 PMID: 4154412
  18. Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.
    J Mol Biol. 1978 Mar 25;120(1):97-120 PMID: 642007
  19. Complete nucleotide sequence of the Escherichia coli gdhA gene.
    Nucleic Acids Res. 1983 Aug 11;11(15):5257-66 PMID: 6308576
  20. Antitumor drugs inhibit the growth of halophilic archaebacteria.
    Eur J Biochem. 1987 Dec 1;169(2):231-6 PMID: 3121311
  21. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  22. Functional implications related to the gene structure of the elongation factor EF-Tu from Halobacterium marismortui.
    Nucleic Acids Res. 1990 Feb 11;18(3):507-11 PMID: 2155402
  23. Nucleotide sequence of the GDH gene coding for the NADP-specific glutamate dehydrogenase of Saccharomyces cerevisiae.
    Gene. 1985;37(1-3):247-53 PMID: 2932370
  24. Characterization of a gene involved in histidine biosynthesis in Halobacterium (Haloferax) volcanii: isolation and rapid mapping by transformation of an auxotroph with cosmid DNA.
    J Bacteriol. 1990 Jun;172(6):3244-9 PMID: 2345144
  25. Sequence diversity among related genes for recognition of specific targets in DNA molecules.
    J Mol Biol. 1983 May 5;166(1):1-19 PMID: 6304321
  26. Analysis of the kinetic mechanism of halophilic NADP-dependent glutamate dehydrogenase.
    Biochim Biophys Acta. 1990 Dec 5;1041(3):305-10 PMID: 1980084
  27. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  28. Partial amino acid sequence of the glutamate dehydrogenase of human liver and a revision of the sequence of the bovine enzyme.
    J Biol Chem. 1979 May 10;254(9):3427-38 PMID: 429360
  29. Mutational amino acid replacements in Neurospora crassa NADP-specific glutamate dehydrogenase.
    J Mol Biol. 1976 Sep 5;106(1):1-22 PMID: 9517
  30. Nicotinamide adenine dinucleotide phosphate-specific glutamate dehydrogenase of Neurospora.
    J Biol Chem. 1975 May 25;250(10):3644-54 PMID: 236297
  31. Beta-turns in proteins.
    J Mol Biol. 1977 Sep 15;115(2):135-75 PMID: 592361
  32. Nucleotide sequence and expression of the glutamine synthetase structural gene, glnA, of the archaebacterium Methanococcus voltae.
    Res Microbiol. 1989 Jul-Aug;140(6):355-71 PMID: 2575777
  33. Glutamate dehydrogenase from the thermoacidophilic archaebacterium Sulfolobus solfataricus.
    Eur J Biochem. 1991 Mar 14;196(2):459-67 PMID: 1901040
  34. Structure of a split yeast gene: complete nucleotide sequence of the actin gene in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2546-50 PMID: 6994099
  35. The complete nucleotide sequence of the Neurospora crassa am (NADP-specific glutamate dehydrogenase) gene.
    Gene. 1983 Dec;26(2-3):253-60 PMID: 6231215
  36. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.
    Proc Natl Acad Sci U S A. 1990 Jun;87(12):4576-9 PMID: 2112744
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1991-12-00
Pages
345-52
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Databases
GENBANK
S55527, S55528, S55529, S55530, S55531, S55532, S63909, S69885, S75579, X63837
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