-
Construction of simple and efficient DNA vector-based short hairpin RNA expression systems for specific gene silencing in mammalian cells.
Methods Mol Biol. 2007;408:223-41
PMID: 18314586
-
MicroRNAs as targets for antisense-based therapeutics.
Expert Opin Biol Ther. 2008 Jan;8(1):59-81
PMID: 18081537
-
Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA.
Immunity. 2005 Aug;23(2):165-75
PMID: 16111635
-
Enhanced gene silencing of HIV-1 specific siRNA using microRNA designed hairpins.
Nucleic Acids Res. 2004 Feb 13;32(3):1154-8
PMID: 14966264
-
Lentivirus-mediated antagomir expression for specific inhibition of miRNA function.
Nucleic Acids Res. 2007;35(22):e149
PMID: 18025036
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
Nature. 2005 Feb 17;433(7027):769-73
PMID: 15685193
-
The antisense strand of small interfering RNAs directs histone methylation and transcriptional gene silencing in human cells.
RNA. 2006 Feb;12(2):256-62
PMID: 16373483
-
Structural requirements of double-stranded RNA for the activation of 2',5'-oligo(A) polymerase and protein kinase of interferon-treated HeLa cells.
J Biol Chem. 1979 Oct 25;254(20):10180-3
PMID: 489592
-
Sequence context effects on oligo(dT) termination signal recognition by Saccharomyces cerevisiae RNA polymerase III.
J Biol Chem. 2005 May 20;280(20):19551-62
PMID: 15788403
-
Short-hairpin RNAs synthesized by T7 phage polymerase do not induce interferon.
Nucleic Acids Res. 2008 Feb;36(3):e18
PMID: 18208841
-
Second-generation shRNA libraries covering the mouse and human genomes.
Nat Genet. 2005 Nov;37(11):1281-8
PMID: 16200065
-
Hunting G-quadruplexes.
Biochimie. 2008 Aug;90(8):1140-8
PMID: 18294969
-
The promises and pitfalls of RNA-interference-based therapeutics.
Nature. 2009 Jan 22;457(7228):426-33
PMID: 19158789
-
Gene silencing using micro-RNA designed hairpins.
RNA. 2002 Jun;8(6):842-50
PMID: 12088155
-
The potential of modulating small RNA activity in vivo.
Mini Rev Med Chem. 2009 Feb;9(2):235-48
PMID: 19200028
-
Most mammalian mRNAs are conserved targets of microRNAs.
Genome Res. 2009 Jan;19(1):92-105
PMID: 18955434
-
An extensive class of small RNAs in Caenorhabditis elegans.
Science. 2001 Oct 26;294(5543):862-4
PMID: 11679672
-
Characterization of 69- and 100-kDa forms of 2-5A-synthetase from interferon-treated human cells.
J Biol Chem. 1988 Apr 5;263(10):4945-9
PMID: 3350819
-
Chemical modification of siRNAs for in vivo use.
Oligonucleotides. 2008 Dec;18(4):305-19
PMID: 19025401
-
A large-scale chemical modification screen identifies design rules to generate siRNAs with high activity, high stability and low toxicity.
Nucleic Acids Res. 2009 May;37(9):2867-81
PMID: 19282453
-
Processing of primary microRNAs by the Microprocessor complex.
Nature. 2004 Nov 11;432(7014):231-5
PMID: 15531879
-
Protein families and RNA recognition.
FEBS J. 2005 May;272(9):2088-97
PMID: 15853794
-
Sequence-dependent stimulation of the mammalian innate immune response by synthetic siRNA.
Nat Biotechnol. 2005 Apr;23(4):457-62
PMID: 15778705
-
Sequence- and target-independent angiogenesis suppression by siRNA via TLR3.
Nature. 2008 Apr 3;452(7187):591-7
PMID: 18368052
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.
Nature. 2009 Jul 23;460(7254):479-86
PMID: 19536157
-
The eukaryotic genome as an RNA machine.
Science. 2008 Mar 28;319(5871):1787-9
PMID: 18369136
-
mRNA localization: gene expression in the spatial dimension.
Cell. 2009 Feb 20;136(4):719-30
PMID: 19239891
-
Lipid-based systemic delivery of siRNA.
Adv Drug Deliv Rev. 2009 Jul 25;61(9):721-31
PMID: 19328215
-
siRNA and innate immunity.
Oligonucleotides. 2009 Jun;19(2):89-102
PMID: 19441890
-
VISA is an adapter protein required for virus-triggered IFN-beta signaling.
Mol Cell. 2005 Sep 16;19(6):727-40
PMID: 16153868
-
Induction of inflammatory cytokines and interferon responses by double-stranded and single-stranded siRNAs is sequence-dependent and requires endosomal localization.
J Mol Biol. 2005 May 20;348(5):1079-90
PMID: 15854645
-
Confirming the RNAi-mediated mechanism of action of siRNA-based cancer therapeutics in mice.
J Clin Invest. 2009 Mar;119(3):661-73
PMID: 19229107
-
Cell type-specific involvement of RIG-I in antiviral response.
Immunity. 2005 Jul;23(1):19-28
PMID: 16039576
-
miR-122 targeting with LNA/2'-O-methyl oligonucleotide mixmers, peptide nucleic acids (PNA), and PNA-peptide conjugates.
RNA. 2008 Feb;14(2):336-46
PMID: 18073344
-
Length-dependent recognition of double-stranded ribonucleic acids by retinoic acid-inducible gene-I and melanoma differentiation-associated gene 5.
J Exp Med. 2008 Jul 7;205(7):1601-10
PMID: 18591409
-
HIV-1 TAR RNA has an intrinsic ability to activate interferon-inducible enzymes.
Virology. 1994 Nov 1;204(2):823-7
PMID: 7524241
-
Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus.
Immunity. 2009 Jul 17;31(1):25-34
PMID: 19576794
-
Artificial miRNAs mitigate shRNA-mediated toxicity in the brain: implications for the therapeutic development of RNAi.
Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5868-73
PMID: 18398004
-
Double-stranded regions are essential design components of potent inhibitors of RISC function.
RNA. 2007 May;13(5):723-30
PMID: 17400817
-
Functional polarity is introduced by Dicer processing of short substrate RNAs.
Nucleic Acids Res. 2005 Jul 26;33(13):4140-56
PMID: 16049023
-
Dispatched Homolog 2 is targeted by miR-214 through a combination of three weak microRNA recognition sites.
Nucleic Acids Res. 2008 Aug;36(13):4277-85
PMID: 18583362
-
Mechanisms of endocytosis.
Annu Rev Biochem. 2009;78:857-902
PMID: 19317650
-
Binding of the protein kinase PKR to RNAs with secondary structure defects: role of the tandem A-G mismatch and noncontiguous helixes.
Biochemistry. 1998 May 5;37(18):6303-16
PMID: 9572845
-
Long non-coding RNAs: insights into functions.
Nat Rev Genet. 2009 Mar;10(3):155-9
PMID: 19188922
-
Species-specific recognition of single-stranded RNA via toll-like receptor 7 and 8.
Science. 2004 Mar 5;303(5663):1526-9
PMID: 14976262
-
Lack of interferon response in animals to naked siRNAs.
Nat Biotechnol. 2004 Dec;22(12):1579-82
PMID: 15558046
-
Therapeutic potential of Toll-like receptor 9 activation.
Nat Rev Drug Discov. 2006 Jun;5(6):471-84
PMID: 16763660
-
The human DiGeorge syndrome critical region gene 8 and Its D. melanogaster homolog are required for miRNA biogenesis.
Curr Biol. 2004 Dec 14;14(23):2162-7
PMID: 15589161
-
Impact of protein kinase PKR in cell biology: from antiviral to antiproliferative action.
Microbiol Mol Biol Rev. 2006 Dec;70(4):1032-60
PMID: 17158706
-
A structural basis for discriminating between self and nonself double-stranded RNAs in mammalian cells.
Nat Biotechnol. 2006 May;24(5):559-65
PMID: 16648842
-
5'-triphosphate RNA requires base-paired structures to activate antiviral signaling via RIG-I.
Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12067-72
PMID: 19574455
-
Cellular uptake and intracellular release are major obstacles to the therapeutic application of siRNA: novel options by phosphorothioate-stimulated delivery.
Expert Opin Biol Ther. 2007 Oct;7(10):1531-8
PMID: 17916045
-
RNA structural motifs: building blocks of a modular biomolecule.
Q Rev Biophys. 2005 Aug;38(3):221-43
PMID: 16817983
-
Overexpression of exportin 5 enhances RNA interference mediated by short hairpin RNAs and microRNAs.
RNA. 2005 Feb;11(2):220-6
PMID: 15613540
-
Silencing of microRNAs in vivo with 'antagomirs'.
Nature. 2005 Dec 1;438(7068):685-9
PMID: 16258535
-
Synthetic microRNA designed to target glioma-associated antigen 1 transcription factor inhibits division and induces late apoptosis in pancreatic tumor cells.
Clin Cancer Res. 2006 Nov 1;12(21):6557-64
PMID: 17085671
-
Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs.
Nat Biotechnol. 2009 Jun;27(6):549-55
PMID: 19465925
-
Improved silencing properties using small internally segmented interfering RNAs.
Nucleic Acids Res. 2007;35(17):5886-97
PMID: 17726057
-
Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression.
Mol Cell Biol. 2007 Mar;27(6):2240-52
PMID: 17242205
-
Expression profiling reveals off-target gene regulation by RNAi.
Nat Biotechnol. 2003 Jun;21(6):635-7
PMID: 12754523
-
Knocking down barriers: advances in siRNA delivery.
Nat Rev Drug Discov. 2009 Feb;8(2):129-38
PMID: 19180106
-
Frameshifting RNA pseudoknots: structure and mechanism.
Virus Res. 2009 Feb;139(2):193-208
PMID: 18621088
-
Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3.
Cell. 2005 Sep 9;122(5):669-82
PMID: 16125763
-
Mechanism of interferon action: cDNA structure, expression, and regulation of the interferon-induced, RNA-dependent P1/eIF-2 alpha protein kinase from human cells.
Virology. 1992 May;188(1):33-46
PMID: 1373553
-
Detection of foreign RNA: implications for RNAi.
Immunol Cell Biol. 2005 Jun;83(3):224-8
PMID: 15877599
-
Mechanisms and strategies for effective delivery of antisense and siRNA oligonucleotides.
Nucleic Acids Res. 2008 Jul;36(12):4158-71
PMID: 18558618
-
Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.
Nature. 2001 May 24;411(6836):494-8
PMID: 11373684
-
5'-triphosphate-dependent activation of PKR by RNAs with short stem-loops.
Science. 2007 Nov 30;318(5855):1455-8
PMID: 18048689
-
Sequence determinants of innate immune activation by short interfering RNAs.
BMC Immunol. 2009 Jul 24;10:40
PMID: 19630977
-
Inducible transgenic rat model for diabetes mellitus based on shRNA-mediated gene knockdown.
PLoS One. 2009;4(4):e5124
PMID: 19340286
-
Reading the viral signature by Toll-like receptors and other pattern recognition receptors.
J Mol Med (Berl). 2005 Mar;83(3):180-92
PMID: 15635478
-
An antiviral response directed by PKR phosphorylation of the RNA helicase A.
PLoS Pathog. 2009 Feb;5(2):e1000311
PMID: 19229320
-
Interactions between double-stranded RNA regulators and the protein kinase DAI.
Mol Cell Biol. 1992 Nov;12(11):5238-48
PMID: 1357546
-
Determinants of interferon-stimulated gene induction by RNAi vectors.
Differentiation. 2004 Mar;72(2-3):103-11
PMID: 15066190
-
A nonself RNA pattern: tri-p to panhandle.
Immunity. 2009 Jul 17;31(1):4-5
PMID: 19604485
-
DAI (DLM-1/ZBP1) is a cytosolic DNA sensor and an activator of innate immune response.
Nature. 2007 Jul 26;448(7152):501-5
PMID: 17618271
-
Off-targeting and other non-specific effects of RNAi experiments in mammalian cells.
Curr Opin Mol Ther. 2007 Jun;9(3):248-57
PMID: 17608023
-
Lipidic carriers of siRNA: differences in the formulation, cellular uptake, and delivery with plasmid DNA.
Biochemistry. 2004 Oct 26;43(42):13348-56
PMID: 15491141
-
Structural genomics of RNA.
Nat Struct Biol. 2000 Nov;7 Suppl:954-6
PMID: 11103998
-
Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis.
Mol Cell. 2007 Jun 8;26(5):745-52
PMID: 17540599
-
Identification of novel genes coding for small expressed RNAs.
Science. 2001 Oct 26;294(5543):853-8
PMID: 11679670
-
Expression of shRNA from a tissue-specific pol II promoter is an effective and safe RNAi therapeutic.
Mol Ther. 2008 Sep;16(9):1630-6
PMID: 18665161
-
Shared and unique functions of the DExD/H-box helicases RIG-I, MDA5, and LGP2 in antiviral innate immunity.
J Immunol. 2005 Sep 1;175(5):2851-8
PMID: 16116171
-
Recognition of double-stranded RNA and activation of NF-kappaB by Toll-like receptor 3.
Nature. 2001 Oct 18;413(6857):732-8
PMID: 11607032
-
Breaking the bonds: non-viral vectors become chemically dynamic.
Mol Ther. 2008 Jan;16(1):8-15
PMID: 17955026
-
Evidence that siRNAs function as guides, not primers, in the Drosophila and human RNAi pathways.
Mol Cell. 2002 Sep;10(3):537-48
PMID: 12408822
-
miRBase: tools for microRNA genomics.
Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8
PMID: 17991681
-
Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA.
Nature. 2008 Jul 24;454(7203):523-7
PMID: 18548002
-
TLR3 in antiviral immunity: key player or bystander?
Trends Immunol. 2005 Sep;26(9):462-8
PMID: 16027039
-
Specific double-stranded RNA interference in undifferentiated mouse embryonic stem cells.
Mol Cell Biol. 2001 Nov;21(22):7807-16
PMID: 11604515
-
Small silencing RNAs: an expanding universe.
Nat Rev Genet. 2009 Feb;10(2):94-108
PMID: 19148191
-
Induction of an interferon response by RNAi vectors in mammalian cells.
Nat Genet. 2003 Jul;34(3):263-4
PMID: 12796781
-
High potency silencing by single-stranded boranophosphate siRNA.
Nucleic Acids Res. 2006 May 22;34(9):2773-81
PMID: 16717282
-
Target mimicry provides a new mechanism for regulation of microRNA activity.
Nat Genet. 2007 Aug;39(8):1033-7
PMID: 17643101
-
Immune responses to dsRNA: implications for gene silencing technologies.
Immunol Cell Biol. 2005 Jun;83(3):211-6
PMID: 15877597
-
Single-stranded antisense siRNAs guide target RNA cleavage in RNAi.
Cell. 2002 Sep 6;110(5):563-74
PMID: 12230974
-
Induction of the interferon response by siRNA is cell type- and duplex length-dependent.
RNA. 2006 Jun;12(6):988-93
PMID: 16611941
-
Synthetic shRNAs as potent RNAi triggers.
Nat Biotechnol. 2005 Feb;23(2):227-31
PMID: 15619616
-
Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs).
RNA. 2004 Jan;10(1):12-8
PMID: 14681580
-
Sticky overhangs enhance siRNA-mediated gene silencing.
Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16050-5
PMID: 17913877
-
Sequence-specific inhibition of small RNA function.
PLoS Biol. 2004 Apr;2(4):E98
PMID: 15024405
-
Specificity, duplex degradation and subcellular localization of antagomirs.
Nucleic Acids Res. 2007;35(9):2885-92
PMID: 17439965
-
Activation of NF-kappaB by double-stranded RNA (dsRNA) in the absence of protein kinase R and RNase L demonstrates the existence of two separate dsRNA-triggered antiviral programs.
Mol Cell Biol. 2001 Jan;21(1):61-72
PMID: 11113181
-
Design and delivery of antisense oligonucleotides to block microRNA function in cultured Drosophila and human cells.
Nat Protoc. 2008;3(10):1537-49
PMID: 18802435
-
Off-target effects by siRNA can induce toxic phenotype.
RNA. 2006 Jul;12(7):1188-96
PMID: 16682561
-
Activation of the mammalian immune system by siRNAs.
Nat Biotechnol. 2005 Nov;23(11):1399-405
PMID: 16273073
-
Tyrosine phosphorylation acts as a molecular switch to full-scale activation of the eIF2alpha RNA-dependent protein kinase.
Proc Natl Acad Sci U S A. 2006 Jan 3;103(1):63-8
PMID: 16373505
-
An apoptotic signaling pathway in the interferon antiviral response mediated by RNase L and c-Jun NH2-terminal kinase.
J Biol Chem. 2004 Jan 9;279(2):1123-31
PMID: 14570908
-
Toxicogenomics of non-viral vectors for gene therapy: a microarray study of lipofectin- and oligofectamine-induced gene expression changes in human epithelial cells.
J Drug Target. 2003 Jul;11(6):311-23
PMID: 14668052
-
Solution structures of cytosolic RNA sensor MDA5 and LGP2 C-terminal domains: identification of the RNA recognition loop in RIG-I-like receptors.
J Biol Chem. 2009 Jun 26;284(26):17465-74
PMID: 19380577
-
Gene silencing with siRNA duplexes composed of target-mRNA-complementary and partially palindromic or partially complementary single-stranded siRNAs.
RNA Biol. 2006 Apr;3(2):82-9
PMID: 17114944
-
Strategies for silencing human disease using RNA interference.
Nat Rev Genet. 2007 Mar;8(3):173-84
PMID: 17304245
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.
Science. 2001 Oct 26;294(5543):858-62
PMID: 11679671
-
Astrocytes are very sensitive to develop innate immune responses to lipid-carried short interfering RNA.
Glia. 2009 Jan 1;57(1):93-107
PMID: 18709661
-
Human RISC couples microRNA biogenesis and posttranscriptional gene silencing.
Cell. 2005 Nov 18;123(4):631-40
PMID: 16271387
-
Overcoming the innate immune response to small interfering RNA.
Hum Gene Ther. 2008 Feb;19(2):111-24
PMID: 18230025
-
Improved targeting of miRNA with antisense oligonucleotides.
Nucleic Acids Res. 2006 May 11;34(8):2294-304
PMID: 16690972
-
Artificial microRNAs as siRNA shuttles: improved safety as compared to shRNAs in vitro and in vivo.
Mol Ther. 2009 Jan;17(1):169-75
PMID: 19002161
-
Sequence-specific potent induction of IFN-alpha by short interfering RNA in plasmacytoid dendritic cells through TLR7.
Nat Med. 2005 Mar;11(3):263-70
PMID: 15723075
-
Helper-dependent adenovirus-mediated short hairpin RNA expression in the liver activates the interferon response.
J Biol Chem. 2008 Jan 25;283(4):2120-8
PMID: 18025090
-
Adverse effects induced by short hairpin RNA expression in porcine fetal fibroblasts.
Biochem Biophys Res Commun. 2008 May 23;370(1):113-7
PMID: 18358831
-
Widespread changes in protein synthesis induced by microRNAs.
Nature. 2008 Sep 4;455(7209):58-63
PMID: 18668040
-
Nuclear export of microRNA precursors.
Science. 2004 Jan 2;303(5654):95-8
PMID: 14631048
-
Nuclear transcription of long hairpin RNA triggers innate immune responses.
J Interferon Cytokine Res. 2007 Sep;27(9):789-97
PMID: 17892400
-
Systematic identification of microRNA functions by combining target prediction and expression profiling.
Nucleic Acids Res. 2006 Mar 20;34(5):1646-52
PMID: 16549876
-
The C-terminal regulatory domain is the RNA 5'-triphosphate sensor of RIG-I.
Mol Cell. 2008 Feb 1;29(2):169-79
PMID: 18243112
-
Chemical modification patterns compatible with high potency dicer-substrate small interfering RNAs.
Oligonucleotides. 2008 Jun;18(2):187-200
PMID: 18637735
-
Nonself RNA-sensing mechanism of RIG-I helicase and activation of antiviral immune responses.
Mol Cell. 2008 Feb 29;29(4):428-40
PMID: 18242112
-
IPS-1, an adaptor triggering RIG-I- and Mda5-mediated type I interferon induction.
Nat Immunol. 2005 Oct;6(10):981-8
PMID: 16127453
-
MicroRNA-219 modulates NMDA receptor-mediated neurobehavioral dysfunction.
Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3507-12
PMID: 19196972
-
RIG-I-mediated antiviral responses to single-stranded RNA bearing 5'-phosphates.
Science. 2006 Nov 10;314(5801):997-1001
PMID: 17038589
-
RNA regulons: coordination of post-transcriptional events.
Nat Rev Genet. 2007 Jul;8(7):533-43
PMID: 17572691
-
Proteomics joins the search for microRNA targets.
Cell. 2008 Aug 22;134(4):560-2
PMID: 18724926
-
MicroRNA genes are transcribed by RNA polymerase II.
EMBO J. 2004 Oct 13;23(20):4051-60
PMID: 15372072
-
Small interfering RNA-induced transcriptional gene silencing in human cells.
Science. 2004 Aug 27;305(5688):1289-92
PMID: 15297624
-
A protocol for designing siRNAs with high functionality and specificity.
Nat Protoc. 2007;2(9):2068-78
PMID: 17853862
-
Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.
Cell. 2005 Jan 14;120(1):15-20
PMID: 15652477
-
Interferon action: two distinct pathways for inhibition of protein synthesis by double-stranded RNA.
Proc Natl Acad Sci U S A. 1978 Dec;75(12):5893-7
PMID: 282611
-
Lipoplex-mediated transfection of mammalian cells occurs through the cholesterol-dependent clathrin-mediated pathway of endocytosis.
J Biol Chem. 2002 May 17;277(20):18021-8
PMID: 11875062
-
The RNA helicase RIG-I has an essential function in double-stranded RNA-induced innate antiviral responses.
Nat Immunol. 2004 Jul;5(7):730-7
PMID: 15208624
-
Hairpin RNA: a secondary structure of primary importance.
Cell Mol Life Sci. 2006 Apr;63(7-8):901-8
PMID: 16568238
-
Similar behaviour of single-strand and double-strand siRNAs suggests they act through a common RNAi pathway.
Nucleic Acids Res. 2003 May 1;31(9):2401-7
PMID: 12711685
-
Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.
Nat Biotechnol. 2009 Jul;27(7):667-70
PMID: 19561594
-
In vitro activation of the interferon-induced, double-stranded RNA-dependent protein kinase PKR by RNA from the 3' untranslated regions of human alpha-tropomyosin.
Proc Natl Acad Sci U S A. 1996 Jan 9;93(1):508-13
PMID: 8552671
-
The regulatory domain of the RIG-I family ATPase LGP2 senses double-stranded RNA.
Nucleic Acids Res. 2009 Apr;37(6):2014-25
PMID: 19208642
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
Mol Cell Proteomics. 2002 May;1(5):376-86
PMID: 12118079
-
Cytosolic viral sensor RIG-I is a 5'-triphosphate-dependent translocase on double-stranded RNA.
Science. 2009 Feb 20;323(5917):1070-4
PMID: 19119185
-
The RNA helicase Lgp2 inhibits TLR-independent sensing of viral replication by retinoic acid-inducible gene-I.
J Immunol. 2005 Oct 15;175(8):5260-8
PMID: 16210631
-
Organization of the double-stranded RNA-activated protein kinase DAI and virus-associated VA RNAI in adenovirus-2-infected HeLa cells.
J Cell Sci. 1993 Sep;106 ( Pt 1):11-22
PMID: 7903669
-
The nuclear RNase III Drosha initiates microRNA processing.
Nature. 2003 Sep 25;425(6956):415-9
PMID: 14508493
-
Interferon induction by siRNAs and ssRNAs synthesized by phage polymerase.
Nat Biotechnol. 2004 Mar;22(3):321-5
PMID: 14990954
-
Distinguishing protein-coding and noncoding genes in the human genome.
Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19428-33
PMID: 18040051
-
RNA-binding proteins: modular design for efficient function.
Nat Rev Mol Cell Biol. 2007 Jun;8(6):479-90
PMID: 17473849
-
Enhancing and confirming the specificity of RNAi experiments.
Nat Methods. 2006 Sep;3(9):677-81
PMID: 16929311
-
Rational design and in vitro and in vivo delivery of Dicer substrate siRNA.
Nat Protoc. 2006;1(2):508-17
PMID: 17406276
-
Misinterpreting the therapeutic effects of small interfering RNA caused by immune stimulation.
Hum Gene Ther. 2008 Oct;19(10):991-9
PMID: 18713023
-
TICAM-1, an adaptor molecule that participates in Toll-like receptor 3-mediated interferon-beta induction.
Nat Immunol. 2003 Feb;4(2):161-7
PMID: 12539043
-
Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality.
Nucleic Acids Res. 2005 Jan 14;33(1):439-47
PMID: 15653644
-
Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems.
Proc Natl Acad Sci U S A. 2001 Aug 14;98(17):9742-7
PMID: 11481446
-
Translational control of localized mRNAs: restricting protein synthesis in space and time.
Nat Rev Mol Cell Biol. 2008 Dec;9(12):971-80
PMID: 19023284
-
The human 2',5'-oligoadenylate synthetase locus is composed of three distinct genes clustered on chromosome 12q24.2 encoding the 100-, 69-, and 40-kDa forms.
Genomics. 1998 Sep 15;52(3):267-77
PMID: 9790745
-
Gene expression analysis in blood cells in response to unmodified and 2'-modified siRNAs reveals TLR-dependent and independent effects.
J Mol Biol. 2007 Jan 5;365(1):90-108
PMID: 17054988
-
Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy.
Nat Biotechnol. 2005 Feb;23(2):222-6
PMID: 15619617
-
The human 2',5'-oligoadenylate synthetase family: interferon-induced proteins with unique enzymatic properties.
J Interferon Cytokine Res. 1999 Apr;19(4):295-308
PMID: 10334380
-
TLR8-driven IL-12-dependent reciprocal and synergistic activation of NK cells and monocytes by immunostimulatory RNA.
J Immunother. 2009 Apr;32(3):262-71
PMID: 19242374
-
Stable knockdown of microRNA in vivo by lentiviral vectors.
Nat Methods. 2009 Jan;6(1):63-6
PMID: 19043411
-
Chemical modification of siRNAs to improve serum stability without loss of efficacy.
Biochem Biophys Res Commun. 2006 Apr 14;342(3):919-27
PMID: 16598842
-
Two classes of short interfering RNA in RNA silencing.
EMBO J. 2002 Sep 2;21(17):4671-9
PMID: 12198169
-
Interferon-induced inhibition of protein synthesis in L-cell extracts: an ATP-dependent step in the activation of an inhibitor by double-stranded RNA.
Proc Natl Acad Sci U S A. 1976 Sep;73(9):3136-40
PMID: 184463
-
On the art of identifying effective and specific siRNAs.
Nat Methods. 2006 Sep;3(9):670-6
PMID: 16929310
-
Activation of interferon-inducible 2'-5' oligoadenylate synthetase by adenoviral VAI RNA.
J Biol Chem. 1995 Feb 17;270(7):3454-61
PMID: 7531709
-
Double-stranded RNA induces an antiviral defense status in epidermal keratinocytes through TLR3-, PKR-, and MDA5/RIG-I-mediated differential signaling.
J Immunol. 2008 Aug 15;181(4):2694-704
PMID: 18684960
-
Mechanistic link between PKR dimerization, autophosphorylation, and eIF2alpha substrate recognition.
Cell. 2005 Sep 23;122(6):901-13
PMID: 16179259
-
A pleiotropically acting microRNA, miR-31, inhibits breast cancer metastasis.
Cell. 2009 Jun 12;137(6):1032-46
PMID: 19524507
-
A microRNA component of the p53 tumour suppressor network.
Nature. 2007 Jun 28;447(7148):1130-4
PMID: 17554337
-
Absence of non-specific effects of RNA interference triggered by long double-stranded RNA in mouse oocytes.
Dev Biol. 2005 Oct 15;286(2):464-71
PMID: 16154556
-
Regulated portals of entry into the cell.
Nature. 2003 Mar 6;422(6927):37-44
PMID: 12621426
-
Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.
Genes Dev. 2003 Dec 15;17(24):3011-6
PMID: 14681208
-
Nucleic acid agonists for Toll-like receptor 7 are defined by the presence of uridine ribonucleotides.
Eur J Immunol. 2006 Dec;36(12):3256-67
PMID: 17111347
-
Activation of the protein kinase PKR by short double-stranded RNAs with single-stranded tails.
RNA. 2004 Dec;10(12):1934-45
PMID: 15547138
-
Target protectors reveal dampening and balancing of Nodal agonist and antagonist by miR-430.
Science. 2007 Oct 12;318(5848):271-4
PMID: 17761850
-
mda-5: An interferon-inducible putative RNA helicase with double-stranded RNA-dependent ATPase activity and melanoma growth-suppressive properties.
Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):637-42
PMID: 11805321
-
Activation of the interferon system by short-interfering RNAs.
Nat Cell Biol. 2003 Sep;5(9):834-9
PMID: 12942087
-
Design of noninflammatory synthetic siRNA mediating potent gene silencing in vivo.
Mol Ther. 2006 Mar;13(3):494-505
PMID: 16343994
-
Mechanism of PKR Activation by dsRNA.
J Mol Biol. 2008 Aug 29;381(2):351-60
PMID: 18599071
-
The Microprocessor complex mediates the genesis of microRNAs.
Nature. 2004 Nov 11;432(7014):235-40
PMID: 15531877
-
5'-Triphosphate-siRNA: turning gene silencing and Rig-I activation against melanoma.
Nat Med. 2008 Nov;14(11):1256-63
PMID: 18978796
-
Prevention of interferon-stimulated gene expression using microRNA-designed hairpins.
Gene Ther. 2009 Jan;16(1):142-7
PMID: 18701917
-
Drug delivery of siRNA therapeutics: potentials and limits of nanosystems.
Nanomedicine. 2009 Mar;5(1):8-20
PMID: 18640078
-
Functional characterization of and cooperation between the double-stranded RNA-binding motifs of the protein kinase PKR.
J Biol Chem. 2001 Mar 30;276(13):9936-44
PMID: 11134010
-
Interferon-alpha/beta receptor-mediated selective induction of a gene cluster by CpG oligodeoxynucleotide 2006.
BMC Immunol. 2003 Jul 30;4:8
PMID: 12887736
-
Does the understanding of immune activation by RNA predict the design of safe siRNAs?
Front Biosci. 2008 May 01;13:4379-92
PMID: 18508517
-
The utility of LNA in microRNA-based cancer diagnostics and therapeutics.
Semin Cancer Biol. 2008 Apr;18(2):89-102
PMID: 18295505
-
LNA-mediated microRNA silencing in non-human primates.
Nature. 2008 Apr 17;452(7189):896-9
PMID: 18368051
-
Enzymatic characteristics of recombinant medium isozyme of 2'-5' oligoadenylate synthetase.
J Biol Chem. 1999 Jan 15;274(3):1848-55
PMID: 9880569
-
5'-Triphosphate RNA is the ligand for RIG-I.
Science. 2006 Nov 10;314(5801):994-7
PMID: 17038590
-
A system for stable expression of short interfering RNAs in mammalian cells.
Science. 2002 Apr 19;296(5567):550-3
PMID: 11910072
-
The many pathways of RNA degradation.
Cell. 2009 Feb 20;136(4):763-76
PMID: 19239894
-
A transcriptional signaling pathway in the IFN system mediated by 2'-5'-oligoadenylate activation of RNase L.
Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14533-8
PMID: 16203993
-
The impact of microRNAs on protein output.
Nature. 2008 Sep 4;455(7209):64-71
PMID: 18668037
-
Promoter targeted small RNAs induce long-term transcriptional gene silencing in human cells.
Nucleic Acids Res. 2009 May;37(9):2984-95
PMID: 19304753
-
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture.
Nucleic Acids Res. 2006;34(16):e107
PMID: 16945957
-
Vectors expressing efficient RNA decoys achieve the long-term suppression of specific microRNA activity in mammalian cells.
Nucleic Acids Res. 2009 Apr;37(6):e43
PMID: 19223327
-
Transcriptional signaling by double-stranded RNA: role of TLR3.
Cytokine Growth Factor Rev. 2005 Feb;16(1):1-14
PMID: 15733829
-
The ribonome: a dominant force in co-ordinating gene expression.
Biol Cell. 2009 Mar;101(3):169-81
PMID: 19152504
-
Sequence, chemical, and structural variation of small interfering RNAs and short hairpin RNAs and the effect on mammalian gene silencing.
Antisense Nucleic Acid Drug Dev. 2003 Apr;13(2):83-105
PMID: 12804036
-
Approaches for chemically synthesized siRNA and vector-mediated RNAi.
FEBS Lett. 2005 Oct 31;579(26):5974-81
PMID: 16199038
-
MicroRNA sponges: competitive inhibitors of small RNAs in mammalian cells.
Nat Methods. 2007 Sep;4(9):721-6
PMID: 17694064
-
IRF-3-dependent, NFkappa B- and JNK-independent activation of the 561 and IFN-beta genes in response to double-stranded RNA.
Proc Natl Acad Sci U S A. 2002 Apr 30;99(9):6322-7
PMID: 11972054
-
RNA-binding proteins and post-transcriptional gene regulation.
FEBS Lett. 2008 Jun 18;582(14):1977-86
PMID: 18342629
-
Two RNA-binding motifs in the double-stranded RNA-activated protein kinase, DAI.
Genes Dev. 1992 Dec;6(12B):2478-90
PMID: 1364113
-
Structural basis of double-stranded RNA recognition by the RIG-I like receptor MDA5.
Arch Biochem Biophys. 2009 Aug 1;488(1):23-33
PMID: 19531363
-
Cleavage of the siRNA passenger strand during RISC assembly in human cells.
EMBO Rep. 2006 Mar;7(3):314-20
PMID: 16439995
-
Lessons from Nature: microRNA-based shRNA libraries.
Nat Methods. 2006 Sep;3(9):707-14
PMID: 16929316
-
Fatality in mice due to oversaturation of cellular microRNA/short hairpin RNA pathways.
Nature. 2006 May 25;441(7092):537-41
PMID: 16724069
-
Single-stranded small interfering RNA are more immunostimulatory than their double-stranded counterparts: a central role for 2'-hydroxyl uridines in immune responses.
Eur J Immunol. 2006 May;36(5):1222-30
PMID: 16609928
-
Efficient siRNA delivery into primary cells by a peptide transduction domain-dsRNA binding domain fusion protein.
Nat Biotechnol. 2009 Jun;27(6):567-71
PMID: 19448630
-
Vascular smooth muscle-specific knockdown of the noncardiac form of the L-type calcium channel by microRNA-based short hairpin RNA as a potential antihypertensive therapy.
J Pharmacol Exp Ther. 2009 May;329(2):775-82
PMID: 19244098
-
Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells.
Genes Dev. 2002 Apr 15;16(8):948-58
PMID: 11959843
-
Cardif is an adaptor protein in the RIG-I antiviral pathway and is targeted by hepatitis C virus.
Nature. 2005 Oct 20;437(7062):1167-72
PMID: 16177806
-
TLR7 is involved in sequence-specific sensing of single-stranded RNAs in human macrophages.
J Immunol. 2008 Feb 15;180(4):2117-24
PMID: 18250417
-
Minimizing variables among hairpin-based RNAi vectors reveals the potency of shRNAs.
RNA. 2008 Sep;14(9):1834-44
PMID: 18697922
-
Profiling RNA interference (RNAi)-mediated toxicity in neural cultures for effective short interfering RNA design.
J Gene Med. 2009 Jun;11(6):523-34
PMID: 19322910