Home LiteratureArticle Details
PMID: 2008175 Published · ppublish English Journal Article Review

Polyamine--DNA nexus: structural ramifications and biological implications.

Molecular and cellular biochemistry ·Vol. 100 ·No. 2 ·1991-02-02 ·Pages 129-40

Balasundaram D, Tyagi AK

Abstract

Polyamines at physiological concentration can condense DNA, chromatin and promote B to Z DNA transitions. These properties of polyamines are crucial to the molecular organization and functional control of DNA and thus have very significant implications in the control of cellular functions. The structure of polyamines plays an important role in the binding of DNA and chromatin and it is not merely the charge, but a specific chain length of methylene (-CH2) groups that is required. Acetylation of polyamines seems to be an important mode of regulating polyamine-chromatin interaction. Purified histone acetyltransferase also possesses polyamine acetylation activity, thus histones and polyamine acetylation may occur in tandem to alter the structure/function of the nucleosome thereby regulating DNA replication and transcription. Acetylation as a means to diminish the number of charges on polyamine molecules serves as an ordered mechanism to control DNA replication and transcription in vivo. The results on the involvement of polyamines and their analogs in condensation of DNA and B to Z DNA transition correlate well with the conclusions drawn from experiments designed to observe the in vivo effects of polyamines and their analogs on the growth of prokaryotic and eukaryotic cells. For example, any change in the hydrogen bonding capacity of polyamines leads to a marked reduction in protein synthesis and the growth rate of polyamine depleted cells. A minimal level of polyamines is required for cells to move from G1 through S phase and these amines are directly involved in the DNA synthetic phase of the cell cycle. A nexus between polyamines and nucleic acids appears crucial to the cellular function(s) of polyamines.

MeSH Terms
Acetylation Animals Cell Division Chromatin/metabolism DNA/chemistry,metabolism Histones/metabolism Humans Hydrogen Bonding Molecular Structure Polyamines/chemistry,metabolism
Chemicals
Chromatin Histones Polyamines DNA
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Balasundaram D
Department of Biochemistry, University of Delhi South Campus, India.
Tyagi A K
References (83)
83 references, click to expand
  1. Altered heat-shock response in polyamine-depleted bacteria.
    FEBS Lett. 1986 May 5;200(1):117-22 PMID: 3516724
  2. Effects of DNA gyrase inhibitors in a polyamine-auxotrophic strain of Escherichia coli.
    Biochim Biophys Acta. 1987 Oct 9;910(1):21-6 PMID: 2820496
  3. Polyamine metabolism and function.
    Am J Physiol. 1982 Nov;243(5):C212-21 PMID: 6814260
  4. Polyamine-DNA interactions. Condensation of chromatin and naked DNA.
    J Biomol Struct Dyn. 1988 Apr;5(5):1149-61 PMID: 3271502
  5. Mutants of Saccharomyces cerevisiae deficient in polyamine biosynthesis: studies on the regulation of ornithine decarboxylase.
    Med Biol. 1981 Dec;59(5-6):272-8 PMID: 7040829
  6. Growth and macromolecular composition of a mutant of Escherichia coli during polyamine limitation.
    J Bacteriol. 1973 Jan;113(1):271-7 PMID: 4569404
  7. Biosynthesis of polyamines in ornithine decarboxylase, arginine decarboxylase, and agmatine ureohydrolase deletion mutants of Escherichia coli strain K-12.
    Proc Natl Acad Sci U S A. 1987 Jul;84(13):4423-7 PMID: 2440022
  8. Regulation of ornithine decarboxylase mRNA translation by polyamines. Studies using a cell-free system and a cell line with an amplified ornithine decarboxylase gene.
    J Biol Chem. 1988 Mar 5;263(7):3528-33 PMID: 3125182
  9. Immunological detection of B-DNA to Z-DNA transition of polynucleotides by immobilization of the DNA conformation on a solid support.
    Anal Biochem. 1988 Feb 1;168(2):358-66 PMID: 3284413
  10. A twenty-two-fold increase in the relative affinity of estrogen receptor to poly (dA-dC).poly (dG-dT) in the presence of polyamines.
    Nucleic Acids Res. 1988 May 25;16(10):4705-20 PMID: 3380695
  11. Spermidine inhibits degradation of yeast chromatin.
    Biochim Biophys Acta. 1984 Jul 18;782(3):328-30 PMID: 6375726
  12. Association constants for the interaction of double-stranded and single-stranded DNA with spermine, spermidine, putrescine, diaminopropane, N1- and N8-acetylspermidine, and magnesium: determination from analysis of the broadening of thermal denaturation curves.
    Arch Biochem Biophys. 1986 Apr;246(1):225-32 PMID: 3963822
  13. The role of sequence in the stabilization of left-handed DNA helices in vitro and in vivo.
    Biochim Biophys Acta. 1988 Sep 7;950(3):243-54 PMID: 3048405
  14. Stimulation of deoxyribonucleic acid replication fork movement by spermidine analogs in polyamine-deficient Escherichia coli.
    J Bacteriol. 1980 Mar;141(3):1192-8 PMID: 6988409
  15. Formation of a compensatory polyamine by Escherichia coli polyamine-requiring mutants during growth in the absence of polyamines.
    J Bacteriol. 1986 Apr;166(1):128-34 PMID: 3514574
  16. Calf liver nuclear N-acetyltransferases. Purification and properties of two enzymes with both spermidine acetyltransferase and histone acetyltransferase activities.
    J Biol Chem. 1978 Jan 10;253(1):233-7 PMID: 22543
  17. Distinct roles of putrescine and spermidine in the regulation of ornithine decarboxylase in Neurospora crassa.
    Proc Natl Acad Sci U S A. 1985 Jun;82(12):4105-9 PMID: 3159019
  18. Aggregation of DNA by analogs of spermidine; enzymatic and structural studies.
    Nucleic Acids Res. 1987 Mar 25;15(6):2563-80 PMID: 3031604
  19. The interaction of spermine and pentamines with DNA.
    Biochem J. 1987 May 15;244(1):243-6 PMID: 3663115
  20. Polyamines in rapid growth and cancer.
    Biochim Biophys Acta. 1978 Apr 6;473(3-4):241-93 PMID: 350276
  21. Inhibition of ornithine decarboxylase of HeLa cells by diamines and polyamines. Effect on cell proliferation.
    Biochem J. 1980 Mar 15;186(3):925-31 PMID: 7396844
  22. Biosynthesis and metabolism of 1,4-diaminobutane, spermidine, spermine, and related amines.
    Adv Enzymol Relat Areas Mol Biol. 1972;36:203-68 PMID: 4628436
  23. Polyamine metabolism in a rat brain tumor cell line: its relationship to the growth rate.
    J Cell Physiol. 1975 Dec;86(3 Pt 1):511-21 PMID: 1202031
  24. Inhibition of translation of mRNAs for ornithine decarboxylase and S-adenosylmethionine decarboxylase by polyamines.
    J Biol Chem. 1987 Feb 25;262(6):2427-30 PMID: 3818602
  25. Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.
    Biochemistry. 1979 May 29;18(11):2192-6 PMID: 444448
  26. Preferential stimulation of the in vivo synthesis of a protein by polyamines in Escherichia coli: purification and properties of the specific protein.
    Biochemistry. 1984 Jun 5;23(12):2679-83 PMID: 6380572
  27. Nucleosome structure.
    Annu Rev Biochem. 1980;49:1115-56 PMID: 6996562
  28. Polyamines and HeLa-cell DNA replication.
    Biochem J. 1986 Aug 15;238(1):37-42 PMID: 3099766
  29. Polyamine metabolism and its importance in neoplastic growth and a target for chemotherapy.
    Cancer Res. 1988 Feb 15;48(4):759-74 PMID: 3123052
  30. Acetylation of decarboxylated S-adenosylmethionine by mammalian cells.
    Biochemistry. 1986 Jan 28;25(2):379-84 PMID: 3006760
  31. An ornithine decarboxylase-deficient mutant of Chinese hamster ovary cells.
    J Biol Chem. 1982 Apr 25;257(8):4603-9 PMID: 7068654
  32. Tumourigenicity, cell-surface glycoprotein changes and ornithine decarboxylase gene pattern in Ehrlich ascites-carcinoma cells.
    Biochem J. 1985 Aug 1;229(3):711-5 PMID: 2996487
  33. Messenger RNAs coding for enzymes of polyamine biosynthesis are induced during the G0-G1 transition but not during traverse of the normal G1 phase.
    J Cell Physiol. 1987 Dec;133(3):590-4 PMID: 3693414
  34. Ionic and structural effects on the thermal helix-coil transition of DNA complexed with natural and synthetic polyamines.
    Biopolymers. 1984 Jul;23(7):1295-306 PMID: 6466769
  35. Overproduction of ornithine decarboxylase confers an apparent growth advantage to mouse tumor cells.
    Biochem Biophys Res Commun. 1988 Aug 30;155(1):373-8 PMID: 3137935
  36. Polyamine stimulation of nucleic acid synthesis in an uninfected and phage-infected polyamine auxotroph of Escherichia coli K12 (arginine-agmatine ureohydrolase-putrescine-spermidine-lysine-cadaverine).
    Proc Natl Acad Sci U S A. 1972 Jan;69(1):213-7 PMID: 4550506
  37. The condensation of chromatin and histone H1-depleted chromatin by spermine.
    J Biomol Struct Dyn. 1986 Oct;4(2):205-18 PMID: 3271439
  38. Isolation of a cDNA clone encoding S-adenosylmethionine decarboxylase. Expression of the gene in mitogen-activated lymphocytes.
    J Biol Chem. 1986 Sep 5;261(25):11697-703 PMID: 3017942
  39. Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC).
    Proc Natl Acad Sci U S A. 1981 Mar;78(3):1619-23 PMID: 6262820
  40. DNA structure and gene regulation.
    Prog Nucleic Acid Res Mol Biol. 1980;24:167-267 PMID: 7005967
  41. Increased efficiency of translation of ornithine decarboxylase mRNA in mitogen-activated lymphocytes.
    Eur J Biochem. 1987 Dec 30;170(1-2):87-92 PMID: 3691536
  42. Compartmentation of spermidine in Neurospora crassa.
    J Biol Chem. 1983 Jul 25;258(14):8608-12 PMID: 6223033
  43. Different binding modes of spermine to A-T and G-C base pairs modulate the bending and stiffening of the DNA double helix.
    J Biomol Struct Dyn. 1988 Oct;6(2):235-46 PMID: 3271522
  44. Polyamines in microorganisms.
    Microbiol Rev. 1985 Mar;49(1):81-99 PMID: 3157043
  45. Acetylation of spermidine and spermine by rat liver and kidney chromatin.
    Arch Biochem Biophys. 1977 Feb;179(1):235-42 PMID: 843085
  46. Specificity of the spermidine requirement for the replication of phi X174 DNA be cell-free extracts of Escherichia coli.
    Biochim Biophys Acta. 1980 Sep 19;609(2):264-71 PMID: 6447515
  47. A left-handed (Z) conformation of poly(dA-dC).poly(dG-dT) induced by polyamines.
    Nucleic Acids Res. 1986 Aug 26;14(16):6721-33 PMID: 3748821
  48. Polyamines and acetylpolyamines increase the stability and alter the conformation of nucleosome core particles.
    Biochemistry. 1987 Jun 16;26(12):3643-9 PMID: 3651402
  49. Spermidine requirement for cell proliferation in eukaryotic cells: structural specificity and quantitation.
    Science. 1983 Mar 4;219(4588):1083-5 PMID: 6823570
  50. Specificity of polyamine requirements for the replication and maintenance of different double-stranded RNA plasmids in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1984 Feb;81(4):1149-53 PMID: 6366799
  51. Polyamines.
    Annu Rev Biochem. 1984;53:749-90 PMID: 6206782
  52. Polyamine starvation causes parallel increase in nuclear and chromosomal aberrations in a polyamine-dependent strain of CHO.
    Exp Cell Res. 1983 Apr 15;145(1):222-6 PMID: 6682797
  53. Modulation of the binding of progesterone receptor to DNA by polyamines.
    Cancer Res. 1988 Mar 1;48(5):1217-22 PMID: 3342402
  54. Differential effects on the B-to-Z transition of poly(dG-me5dC).poly(dG-me5dC) produced by N1- and N8-acetyl spermidine.
    Biopolymers. 1985 Apr;24(4):725-9 PMID: 3995158
  55. Influence of DNA length on spermine-induced condensation. Importance of the bending and stiffening of DNA.
    Biochim Biophys Acta. 1987 Aug 25;909(3):165-72 PMID: 3040099
  56. 1,4-Diaminobutane (putrescine), spermidine, and spermine.
    Annu Rev Biochem. 1976;45:285-306 PMID: 786151
  57. Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase.
    Proc Natl Acad Sci U S A. 1976 Dec;73(12):4474-8 PMID: 794878
  58. Structural specificity of the spermidine requirement of an Escherichia coli auxotroph.
    J Bacteriol. 1980 Feb;141(2):456-63 PMID: 6154032
  59. Structural determinants of spermidine-DNA interactions.
    Biopolymers. 1987 May;26(5):691-703 PMID: 3593890
  60. Induction of major chromosome aberrations in Chinese hamster ovary cells by alpha-difluoromethylornithine.
    Cancer Res. 1984 Oct;44(10):4535-9 PMID: 6432316
  61. Electron microscopy and biochemical properties of polyamine-compacted DNA.
    Biochemistry. 1987 Oct 6;26(20):6387-92 PMID: 3322379
  62. Structural specificity of polyamines in left-handed Z-DNA formation. Immunological and spectroscopic studies.
    J Mol Biol. 1988 May 20;201(2):463-7 PMID: 3418706
  63. Catenation of DNA rings by topoisomerases. Mechanism of control by spermidine.
    J Biol Chem. 1982 Mar 10;257(5):2687-93 PMID: 6277910
  64. Different binding modes of spermine to A-T and G-C base pairs modulate the bending and stiffening of the DNA double helix.
    Biochem Pharmacol. 1988 May 1;37(9):1857-8 PMID: 3377853
  65. Regulation of cellular polyamines in mammals.
    Acta Biochim Biophys Hung. 1988;23(1):1-35 PMID: 3137754
  66. Polyamine transport in Neurospora crassa.
    Arch Biochem Biophys. 1988 Dec;267(2):479-89 PMID: 2975157
  67. Control of ornithine decarboxylase activity in alpha-difluoromethylornithine-resistant L1210 cells by polyamines and synthetic analogues.
    J Biol Chem. 1988 Aug 5;263(22):11008-14 PMID: 3134356
  68. Studies of non-metabolizable polyamines that support growth of SV-3T3 cells depleted of natural polyamines by exposure to alpha-difluoromethylornithine.
    Biochem J. 1988 Sep 1;254(2):373-8 PMID: 3140800
  69. SPERMIDINE, SPERMINE, AND RELATED AMINES.
    Pharmacol Rev. 1964 Sep;16:245-300 PMID: 14211123
  70. Cations and the accessibility of chromatin to nucleases.
    Nucleic Acids Res. 1979 Jun 25;6(8):2929-45 PMID: 461208
  71. Histone hyperacetylation: its effects on nucleosome conformation and stability.
    Biochemistry. 1986 Mar 25;25(6):1421-8 PMID: 3964683
  72. Polyamines stabilise DNA folds.
    Nature. 1975 Jan 3;253(5486):62-3 PMID: 1110753
  73. Role of polyamines in the synthesis of RNA in mycobacteria.
    Mol Cell Biochem. 1987 Nov;78(1):3-8 PMID: 2457796
  74. Rat liver nuclear N-acetyltransferases: separation of two enzymes with both histone and spermidine acetyltransferase activity.
    Arch Biochem Biophys. 1980 Aug;203(1):384-9 PMID: 7406506
  75. Functions of polyamine acetylation.
    Can J Physiol Pharmacol. 1987 Oct;65(10):2024-35 PMID: 3322538
  76. Recent advances in the biochemistry of polyamines in eukaryotes.
    Biochem J. 1986 Mar 1;234(2):249-62 PMID: 3087344
  77. Eukaryotic RNA polymerases.
    Comp Biochem Physiol B. 1988;89(4):647-70 PMID: 3288436
  78. Alterations in amounts and covalent modifications of low-molecular-weight chromosomal proteins in Chinese hamster ovary cells during polyamine depletion.
    Biochim Biophys Acta. 1987 Jun 6;909(1):21-9 PMID: 3580372
  79. Mutants of Escherichia coli that do not contain 1,4-diaminobutane (putrescine) or spermidine.
    J Biol Chem. 1979 Dec 25;254(24):12419-26 PMID: 159306
  80. Orientation of the nucleosome within the higher order structure of chromatin.
    Cell. 1980 Nov;22(1 Pt 1):87-96 PMID: 7428043
  81. The role of polyamines in the neutralization of bacteriophage deoxyribonucleic acid.
    J Biol Chem. 1960 Mar;235:769-75 PMID: 13793161
  82. Effect of inhibitors of S-adenosylmethionine decarboxylase on the contents of ornithine decarboxylase and S-adenosylmethionine decarboxylase in L1210 cells.
    Biochem J. 1988 Aug 15;254(1):45-50 PMID: 3178757
  83. Thermal denaturation of mononucleosomes in the presence of spermine, spermidine, N1-acetylspermidine, N8-acetylspermidine or putrescine: implications for chromosome structure.
    Mol Biol Rep. 1987;12(1):21-6 PMID: 3627116
Article Info
Journal
Molecular and cellular biochemistry
Abbr.
Mol Cell Biochem
ISSN
0300-8177
Published
1991-02-02
Pages
129-40
Language
English
Region
Netherlands
NLM ID
0364456
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]