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PMID: 2020548 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The transcription factor LF-A1 interacts with a bipartite recognition sequence in the promoter regions of several liver-specific genes.

Nucleic acids research ·Vol. 19 ·No. 5 ·1991-03-11 ·Pages 1139-46

Ramji DP, Tadros MH, Hardon EM, Cortese R

Abstract

The transcription factors LF-A1 and LF-B1 are required for the cell-specific expression of the human alpha 1-antitrypsin gene in hepatocytes. We report here the purification and preliminary characterization of LF-A1. This protein, purified to homogeneity from calf liver nuclei by site-specific DNA affinity chromatography and reverse-phase HPLC, has a molecular mass of 40 kDa. Binding sites of LF-A1 are present in the promoter regions of several genes expressed in the liver (alpha 1-antitrypsin, apolipoproteins A1, B1, A4 and pyruvate kinase). Interestingly, the binding site of LF-A1 is bipartite and consists of two short sequence motifs (consensus: TGGACT/CT/C and TGGCCC) separated by a variable 'spacer' region. Insertion or deletion of 1-4 nucleotides in the 'spacer' region of the site in the alpha 1-antitrypsin promoter does not abolish DNA binding.

MeSH Terms
Animals Base Sequence Binding Sites Cattle Chromatography, Affinity Chromatography, High Pressure Liquid DNA DNA-Binding Proteins Hepatocyte Nuclear Factor 1 Hepatocyte Nuclear Factor 1-alpha Hepatocyte Nuclear Factor 1-beta Liver/metabolism Molecular Sequence Data Nuclear Proteins Promoter Regions, Genetic Transcription Factors/isolation & purification,metabolism
Chemicals
DNA-Binding Proteins Hepatocyte Nuclear Factor 1-alpha Nuclear Proteins Transcription Factors Hepatocyte Nuclear Factor 1 Hepatocyte Nuclear Factor 1-beta DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ramji D P
European Molecular Biology Laboratory, Heidelberg, FRG.
Tadros M H
Hardon E M
Cortese R
References (42)
42 references, click to expand
  1. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  2. Characterization of the promoter elements required for hepatic and intestinal transcription of the human apoB gene: definition of the DNA-binding site of a tissue-specific transcriptional factor.
    Mol Cell Biol. 1990 Jun;10(6):2653-9 PMID: 2342459
  3. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity.
    Nucleic Acids Res. 1978 Sep;5(9):3157-70 PMID: 212715
  4. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):122-6 PMID: 6987648
  5. Affinity purification of sequence-specific DNA binding proteins.
    Proc Natl Acad Sci U S A. 1986 Aug;83(16):5889-93 PMID: 3461465
  6. Linkage, evolution, and expression of the rat apolipoprotein A-I, C-III, and A-IV genes.
    J Biol Chem. 1986 Oct 5;261(28):13268-77 PMID: 3020028
  7. Tissue-specific in vitro transcription from the mouse albumin promoter.
    Cell. 1986 Dec 5;47(5):767-76 PMID: 3779841
  8. Transcriptional control of the mouse prealbumin (transthyretin) gene: both promoter sequences and a distinct enhancer are cell specific.
    Mol Cell Biol. 1986 Dec;6(12):4697-708 PMID: 3025666
  9. Regulation of inducible and tissue-specific gene expression.
    Science. 1987 Jun 5;236(4806):1237-45 PMID: 3296191
  10. Structure and expression of the human apolipoprotein A-IV gene.
    J Biol Chem. 1987 Jun 15;262(17):7973-81 PMID: 3036793
  11. Factors involved in control of tissue-specific expression of albumin gene.
    Cell. 1987 Aug 14;50(4):627-38 PMID: 3607880
  12. The human haptoglobin gene: transcriptional regulation during development and acute phase induction.
    EMBO J. 1987 Jul;6(7):1905-12 PMID: 2820712
  13. Interaction of a liver-specific nuclear factor with the fibrinogen and alpha 1-antitrypsin promoters.
    Science. 1987 Oct 30;238(4827):688-92 PMID: 3499668
  14. Cis- and trans-acting elements responsible for the cell-specific expression of the human alpha 1-antitrypsin gene.
    EMBO J. 1987 Sep;6(9):2759-66 PMID: 2824193
  15. DNA denatures upon drying after ethanol precipitation.
    Nucleic Acids Res. 1987 Nov 11;15(21):8739-54 PMID: 3684571
  16. The interplay of DNA-binding proteins on the promoter of the mouse albumin gene.
    Cell. 1987 Dec 24;51(6):963-73 PMID: 3690666
  17. Chicken liver TGGCA protein purified by preparative mobility shift electrophoresis (PMSE) shows a 36.8 to 29.8 kd microheterogeneity.
    Nucleic Acids Res. 1987 Dec 10;15(23):9707-26 PMID: 3122180
  18. Trans-acting protein factors and the regulation of eukaryotic transcription: lessons from studies on DNA tumor viruses.
    Genes Dev. 1988 Mar;2(3):267-81 PMID: 3288540
  19. A liver-specific factor and nuclear factor I bind to the rat alpha-fetoprotein promoter.
    J Biol Chem. 1988 Aug 5;263(22):10865-71 PMID: 2455718
  20. Identification of an enhancer-like element in the 5' flanking region of the rat apolipoprotein A-I gene.
    Nucleic Acids Res. 1988 Jul 25;16(14B):7061-70 PMID: 3136438
  21. Two different liver-specific factors stimulate in vitro transcription from the human alpha 1-antitrypsin promoter.
    EMBO J. 1988 Jul;7(7):2075-87 PMID: 3262058
  22. A human protein specific for the immunoglobulin octamer DNA motif contains a functional homeobox domain.
    Cell. 1988 Oct 7;55(1):135-44 PMID: 2901913
  23. Two distinct factors interact with the promoter regions of several liver-specific genes.
    EMBO J. 1988 Jun;7(6):1711-9 PMID: 2844524
  24. Hepatocyte-specific promoter element HP1 of the Xenopus albumin gene interacts with transcriptional factors of mammalian hepatocytes.
    J Mol Biol. 1988 Jul 20;202(2):307-20 PMID: 3172219
  25. The pituitary-specific transcription factor GHF-1 is a homeobox-containing protein.
    Cell. 1988 Nov 4;55(3):505-18 PMID: 2902927
  26. A tissue-specific transcription factor containing a homeodomain specifies a pituitary phenotype.
    Cell. 1988 Nov 4;55(3):519-29 PMID: 2902928
  27. Purification of a NF1-like DNA-binding protein from rat liver and cloning of the corresponding cDNA.
    EMBO J. 1988 Oct;7(10):3115-23 PMID: 3053160
  28. Purified hepatocyte nuclear factor 1 interacts with a family of hepatocyte-specific promoters.
    Proc Natl Acad Sci U S A. 1988 Nov;85(21):7937-41 PMID: 2460858
  29. Enhancers and transcription factors in the control of gene expression.
    Biochim Biophys Acta. 1988 Nov 10;951(1):17-35 PMID: 2847797
  30. Isolation of a recombinant copy of the gene encoding C/EBP.
    Genes Dev. 1988 Jul;2(7):786-800 PMID: 2850264
  31. Different liver nuclear proteins binds to similar DNA sequences in the 5' flanking regions of three hepatic genes.
    Nucleic Acids Res. 1989 Jan 11;17(1):119-33 PMID: 2911463
  32. The DNA binding domain of the rat liver nuclear protein C/EBP is bipartite.
    Science. 1989 Mar 31;243(4899):1681-8 PMID: 2494700
  33. Interaction of DNA-binding proteins with the tissue-specific human apolipoprotein-AII enhancer.
    Nucleic Acids Res. 1989 Mar 25;17(6):2283-300 PMID: 2495523
  34. A glycosylated liver-specific transcription factor stimulates transcription of the albumin gene.
    Cell. 1989 Jun 30;57(7):1179-87 PMID: 2736625
  35. Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins.
    Science. 1989 Jul 28;245(4916):371-8 PMID: 2667136
  36. Eukaryotic transcriptional regulatory proteins.
    Annu Rev Biochem. 1989;58:799-839 PMID: 2673023
  37. The liver-specific transcription factor LF-B1 contains a highly diverged homeobox DNA binding domain.
    Cell. 1989 Oct 6;59(1):145-57 PMID: 2571419
  38. Analysis by cell-free transcription of the liver-specific pyruvate kinase gene promoter.
    Mol Cell Biol. 1989 Oct;9(10):4409-15 PMID: 2586516
  39. Octamer transcription factors and the cell type-specificity of immunoglobulin gene expression.
    FASEB J. 1990 Mar;4(5):1444-9 PMID: 2407588
  40. HNF-1 shares three sequence motifs with the POU domain proteins and is identical to LF-B1 and APF.
    Genes Dev. 1990 Mar;4(3):372-9 PMID: 1970973
  41. Purification and biochemical characterization of hepatocyte nuclear factor 2 involved in liver-specific transcription of the human alpha 1-antitrypsin gene.
    J Biol Chem. 1990 May 25;265(15):8874-9 PMID: 2341408
  42. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1991-03-11
Pages
1139-46
Language
English
Region
England
NLM ID
0411011
PMCID
PMC333792
Subset
IM
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