-
Synchronous and stochastic patterns of gene activation in the Drosophila embryo.
Science. 2009 Jul 24;325(5939):471-3
PMID: 19628867
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors.
Cell. 2006 Aug 25;126(4):663-76
PMID: 16904174
-
Elite and stochastic models for induced pluripotent stem cell generation.
Nature. 2009 Jul 2;460(7251):49-52
PMID: 19571877
-
Growth rate-dependent global effects on gene expression in bacteria.
Cell. 2009 Dec 24;139(7):1366-75
PMID: 20064380
-
The interplay of multiple feedback loops with post-translational kinetics results in bistability of mycobacterial stress response.
Phys Biol. 2010 Aug 23;7(3):036005
PMID: 20733247
-
Transient heterogeneity in extracellular protease production by Bacillus subtilis.
Mol Syst Biol. 2008;4:184
PMID: 18414485
-
A bird's eye view of enteric nervous system development: lessons from the avian embryo.
Pediatr Res. 2008 Oct;64(4):326-33
PMID: 18636038
-
Tunability and noise dependence in differentiation dynamics.
Science. 2007 Mar 23;315(5819):1716-9
PMID: 17379809
-
Mutation as a stress response and the regulation of evolvability.
Crit Rev Biochem Mol Biol. 2007 Sep-Oct;42(5):399-435
PMID: 17917874
-
Bacterial charity work leads to population-wide resistance.
Nature. 2010 Sep 2;467(7311):82-5
PMID: 20811456
-
Social evolution theory for microorganisms.
Nat Rev Microbiol. 2006 Aug;4(8):597-607
PMID: 16845430
-
Positive feedback and noise activate the stringent response regulator rel in mycobacteria.
PLoS One. 2008 Mar 12;3(3):e1771
PMID: 18335046
-
The OR control system of bacteriophage lambda. A physical-chemical model for gene regulation.
J Mol Biol. 1985 Jan 20;181(2):211-30
PMID: 3157005
-
Potential landscape and flux framework of nonequilibrium networks: robustness, dissipation, and coherence of biochemical oscillations.
Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12271-6
PMID: 18719111
-
Absolute rate theories of epigenetic stability.
Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):18926-31
PMID: 16361441
-
Decision making at a subcellular level determines the outcome of bacteriophage infection.
Cell. 2010 May 14;141(4):682-91
PMID: 20478257
-
Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression.
Proc Natl Acad Sci U S A. 2009 Mar 31;106(13):5123-8
PMID: 19279212
-
Stochasticity in gene expression: from theories to phenotypes.
Nat Rev Genet. 2005 Jun;6(6):451-64
PMID: 15883588
-
Bacterial persistence as a phenotypic switch.
Science. 2004 Sep 10;305(5690):1622-5
PMID: 15308767
-
Cell signaling can direct either binary or graded transcriptional responses.
EMBO J. 2001 Jun 15;20(12):3167-76
PMID: 11406593
-
An excitable gene regulatory circuit induces transient cellular differentiation.
Nature. 2006 Mar 23;440(7083):545-50
PMID: 16554821
-
Stochastic spineless expression creates the retinal mosaic for colour vision.
Nature. 2006 Mar 9;440(7081):174-80
PMID: 16525464
-
ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON.
Proc Natl Acad Sci U S A. 1957 Jul 15;43(7):553-66
PMID: 16590055
-
The ancient Virus World and evolution of cells.
Biol Direct. 2006 Sep 19;1:29
PMID: 16984643
-
Social semantics: altruism, cooperation, mutualism, strong reciprocity and group selection.
J Evol Biol. 2007 Mar;20(2):415-32
PMID: 17305808
-
Regulation of noise in the expression of a single gene.
Nat Genet. 2002 May;31(1):69-73
PMID: 11967532
-
Epigenetic and conventional regulation is distributed among activators of FLO11 allowing tuning of population-level heterogeneity in its expression.
PLoS Genet. 2009 Oct;5(10):e1000673
PMID: 19798446
-
Exponential sensitivity of noise-driven switching in genetic networks.
Phys Biol. 2008 Jun 16;5(2):026005
PMID: 18560045
-
Specific binding of the lambda phage repressor to lambda DNA.
Nature. 1967 Apr 15;214(5085):232-4
PMID: 6034235
-
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity.
Cell. 2005 Jul 29;122(2):169-82
PMID: 16051143
-
Epigenetic inheritance, genetic assimilation and speciation.
J Theor Biol. 1999 Sep 7;200(1):19-37
PMID: 10479537
-
A twelve-step program for evolving multicellularity and a division of labor.
Bioessays. 2005 Mar;27(3):299-310
PMID: 15714559
-
Negative feedback loops involving small regulatory RNAs precisely control the Vibrio harveyi quorum-sensing response.
Mol Cell. 2010 Feb 26;37(4):567-79
PMID: 20188674
-
Quorum sensing: cell-to-cell communication in bacteria.
Annu Rev Cell Dev Biol. 2005;21:319-46
PMID: 16212498
-
Stochastic gene expression in fluctuating environments.
Genetics. 2004 May;167(1):523-30
PMID: 15166174
-
Living with noisy genes: how cells function reliably with inherent variability in gene expression.
Annu Rev Biophys Biomol Struct. 2007;36:413-34
PMID: 17477840
-
Direct cell reprogramming is a stochastic process amenable to acceleration.
Nature. 2009 Dec 3;462(7273):595-601
PMID: 19898493
-
Stochastic resonance and the benefits of noise: from ice ages to crayfish and SQUIDs.
Nature. 1995 Jan 5;373(6509):33-6
PMID: 7800036
-
Probing the limits to positional information.
Cell. 2007 Jul 13;130(1):153-64
PMID: 17632062
-
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.
Nature. 2008 May 22;453(7194):544-7
PMID: 18497826
-
On the origin of differentiation.
J Biosci. 2003 Jun;28(4):523-8
PMID: 12799498
-
Collective decision making in bacterial viruses.
Biophys J. 2008 Sep 15;95(6):2673-80
PMID: 18567629
-
Evolving the division of labour: generalists, specialists and task allocation.
J Theor Biol. 2002 Dec 7;219(3):371-88
PMID: 12419663
-
Bet-hedging and epigenetic inheritance in bacterial cell development.
Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4393-8
PMID: 18326026
-
Nanog variability and pluripotency regulation of embryonic stem cells--insights from a mathematical model analysis.
PLoS One. 2010 Jun 21;5(6):e11238
PMID: 20574542
-
Noise in protein expression scales with natural protein abundance.
Nat Genet. 2006 Jun;38(6):636-43
PMID: 16715097
-
Control, exploitation and tolerance of intracellular noise.
Nature. 2002 Nov 14;420(6912):231-7
PMID: 12432408
-
Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution.
Q Rev Biol. 2009 Jun;84(2):131-76
PMID: 19606595
-
Tuning and controlling gene expression noise in synthetic gene networks.
Nucleic Acids Res. 2010 May;38(8):2712-26
PMID: 20211838
-
Adaptable functionality of transcriptional feedback in bacterial two-component systems.
PLoS Comput Biol. 2010 Feb 12;6(2):e1000676
PMID: 20168997
-
Stochastic gene expression in a single cell.
Science. 2002 Aug 16;297(5584):1183-6
PMID: 12183631
-
Transcriptional dynamics of the embryonic stem cell switch.
PLoS Comput Biol. 2006 Sep 15;2(9):e123
PMID: 16978048
-
Transient-mediated fate determination in a transcriptional circuit of HIV.
Nat Genet. 2008 Apr;40(4):466-70
PMID: 18344999
-
Generation of multiple cell types in Bacillus subtilis.
FEMS Microbiol Rev. 2009 Jan;33(1):152-63
PMID: 19054118
-
Emergent bistability by a growth-modulating positive feedback circuit.
Nat Chem Biol. 2009 Nov;5(11):842-8
PMID: 19801994
-
Experimental approaches to the study of HIV-1 latency.
Nat Rev Microbiol. 2007 Feb;5(2):95-106
PMID: 17224919
-
Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis.
Nature. 2009 May 21;459(7245):428-32
PMID: 19363473
-
Is bacterial persistence a social trait?
PLoS One. 2007 Aug 15;2(8):e752
PMID: 17710151
-
Noise in eukaryotic gene expression.
Nature. 2003 Apr 10;422(6932):633-7
PMID: 12687005
-
Switches in bacteriophage lambda development.
Annu Rev Genet. 2005;39:409-29
PMID: 16285866
-
Phenotypic consequences of promoter-mediated transcriptional noise.
Mol Cell. 2006 Dec 28;24(6):853-65
PMID: 17189188
-
Construction of a genetic toggle switch in Escherichia coli.
Nature. 2000 Jan 20;403(6767):339-42
PMID: 10659857
-
Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells.
PLoS Biol. 2009 Jul;7(7):e1000149
PMID: 19582141
-
Noise in gene expression determines cell fate in Bacillus subtilis.
Science. 2007 Jul 27;317(5837):526-9
PMID: 17569828
-
Architecture-dependent noise discriminates functionally analogous differentiation circuits.
Cell. 2009 Oct 30;139(3):512-22
PMID: 19853288
-
Genomic expression programs in the response of yeast cells to environmental changes.
Mol Biol Cell. 2000 Dec;11(12):4241-57
PMID: 11102521
-
Heterocyst formation.
Annu Rev Genet. 1996;30:59-78
PMID: 8982449
-
Diversity in times of adversity: probabilistic strategies in microbial survival games.
J Theor Biol. 2005 May 21;234(2):227-53
PMID: 15757681
-
Engineering stability in gene networks by autoregulation.
Nature. 2000 Jun 1;405(6786):590-3
PMID: 10850721
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells.
Genetics. 1998 Aug;149(4):1633-48
PMID: 9691025
-
Interlinked fast and slow positive feedback loops drive reliable cell decisions.
Science. 2005 Oct 21;310(5747):496-8
PMID: 16239477
-
Variability in gene expression underlies incomplete penetrance.
Nature. 2010 Feb 18;463(7283):913-8
PMID: 20164922
-
MAPK-mediated bimodal gene expression and adaptive gradient sensing in yeast.
Nature. 2007 Mar 1;446(7131):46-51
PMID: 17310144
-
Determination of cell fate selection during phage lambda infection.
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):20705-10
PMID: 19098103
-
FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast.
Cell. 2008 Nov 14;135(4):726-37
PMID: 19013280
-
Analysis of pattern precision shows that Drosophila segmentation develops substantial independence from gradients of maternal gene products.
Dev Dyn. 2006 Nov;235(11):2949-60
PMID: 16960857
-
Experimental evolution of bet hedging.
Nature. 2009 Nov 5;462(7269):90-3
PMID: 19890329
-
Thinking about bacterial populations as multicellular organisms.
Annu Rev Microbiol. 1998;52:81-104
PMID: 9891794
-
Phenotypic diversity, population growth, and information in fluctuating environments.
Science. 2005 Sep 23;309(5743):2075-8
PMID: 16123265
-
Measurement of the copy number of the master quorum-sensing regulator of a bacterial cell.
Biophys J. 2010 May 19;98(9):2024-31
PMID: 20441767
-
Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA.
Nature. 1988 Jul 28;334(6180):320-5
PMID: 2839775
-
The effects of molecular noise and size control on variability in the budding yeast cell cycle.
Nature. 2007 Aug 23;448(7156):947-51
PMID: 17713537
-
Cooperative organization of bacterial colonies: from genotype to morphotype.
Annu Rev Microbiol. 1998;52:779-806
PMID: 9891813
-
Nanog safeguards pluripotency and mediates germline development.
Nature. 2007 Dec 20;450(7173):1230-4
PMID: 18097409
-
The genetical evolution of social behaviour. I.
J Theor Biol. 1964 Jul;7(1):1-16
PMID: 5875341
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.
Nature. 2006 Jun 15;441(7095):840-6
PMID: 16699522
-
Stochastic switching as a survival strategy in fluctuating environments.
Nat Genet. 2008 Apr;40(4):471-5
PMID: 18362885
-
Enhancement of cellular memory by reducing stochastic transitions.
Nature. 2005 May 12;435(7039):228-32
PMID: 15889097
-
Filtering transcriptional noise during development: concepts and mechanisms.
Nat Rev Genet. 2006 Jan;7(1):34-44
PMID: 16369570
-
Stochastic mRNA synthesis in mammalian cells.
PLoS Biol. 2006 Oct;4(10):e309
PMID: 17048983
-
Quantifying the integration of quorum-sensing signals with single-cell resolution.
PLoS Biol. 2009 Mar 24;7(3):e68
PMID: 19320539
-
Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations.
BMC Evol Biol. 2010 Jan 13;10:11
PMID: 20070898
-
Nano-enabled synthetic biology.
Mol Syst Biol. 2007;3:125
PMID: 17625513