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PMID: 22645531 Published · epublish English Journal Article

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Frontiers in plant science ·Vol. 2 ·2011-00-00 ·Pages 34

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D

Abstract

The iPlant Collaborative (iPlant) is a United States National Science Foundation (NSF) funded project that aims to create an innovative, comprehensive, and foundational cyberinfrastructure in support of plant biology research (PSCIC, 2006). iPlant is developing cyberinfrastructure that uniquely enables scientists throughout the diverse fields that comprise plant biology to address Grand Challenges in new ways, to stimulate and facilitate cross-disciplinary research, to promote biology and computer science research interactions, and to train the next generation of scientists on the use of cyberinfrastructure in research and education. Meeting humanity's projected demands for agricultural and forest products and the expectation that natural ecosystems be managed sustainably will require synergies from the application of information technologies. The iPlant cyberinfrastructure design is based on an unprecedented period of research community input, and leverages developments in high-performance computing, data storage, and cyberinfrastructure for the physical sciences. iPlant is an open-source project with application programming interfaces that allow the community to extend the infrastructure to meet its needs. iPlant is sponsoring community-driven workshops addressing specific scientific questions via analysis tool integration and hypothesis testing. These workshops teach researchers how to add bioinformatics tools and/or datasets into the iPlant cyberinfrastructure enabling plant scientists to perform complex analyses on large datasets without the need to master the command-line or high-performance computational services.

Keywords
bioinformatics computational biology cyberinfrastructure plant biology
Authors & Affiliations
65 authors, click to expand affiliations / ORCID
Goff Stephen A
BIO5 Institute, University of Arizona Tucson, AZ, USA.
Vaughn Matthew
McKay Sheldon
Lyons Eric
Stapleton Ann E
Gessler Damian
Matasci Naim
Wang Liya
Hanlon Matthew
Lenards Andrew
Muir Andy
Merchant Nirav
Lowry Sonya
Mock Stephen
Helmke Matthew
Kubach Adam
Narro Martha
Hopkins Nicole
Micklos David
Hilgert Uwe
Gonzales Michael
Jordan Chris
Skidmore Edwin
Dooley Rion
Cazes John
McLay Robert
Lu Zhenyuan
Pasternak Shiran
Koesterke Lars
Piel William H
Grene Ruth
Noutsos Christos
Gendler Karla
Feng Xin
Tang Chunlao
Lent Monica
Kim Seung-Jin
Kvilekval Kristian
Manjunath B S
Tannen Val
Stamatakis Alexandros
Sanderson Michael
Welch Stephen M
Cranston Karen A
Soltis Pamela
Soltis Doug
O'Meara Brian
Ane Cecile
Brutnell Tom
Kleibenstein Daniel J
White Jeffery W
Leebens-Mack James
Donoghue Michael J
Spalding Edgar P
Vision Todd J
Myers Christopher R
Lowenthal David
Enquist Brian J
Boyle Brad
Akoglu Ali
Andrews Greg
Ram Sudha
Ware Doreen
Stein Lincoln
Stanzione Dan
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Article Info
Journal
Frontiers in plant science
Abbr.
Front Plant Sci
ISSN
1664-462X
Published
2011-00-00
Epub
2011-00-25
Pages
34
Language
English
Region
Switzerland
NLM ID
101568200
PMCID
PMC3355756
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