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PMID: 23633962 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Genetic requirements for signaling from an autoactive plant NB-LRR intracellular innate immune receptor.

PLoS genetics ·Vol. 9 ·No. 4 ·2013-00-00 ·Pages e1003465

Roberts M, Tang S, Stallmann A, Dangl JL, Bonardi V

Abstract

Plants react to pathogen attack via recognition of, and response to, pathogen-specific molecules at the cell surface and inside the cell. Pathogen effectors (virulence factors) are monitored by intracellular nucleotide-binding leucine-rich repeat (NB-LRR) sensor proteins in plants and mammals. Here, we study the genetic requirements for defense responses of an autoactive mutant of ADR1-L2, an Arabidopsis coiled-coil (CC)-NB-LRR protein. ADR1-L2 functions upstream of salicylic acid (SA) accumulation in several defense contexts, and it can act in this context as a "helper" to transduce specific microbial activation signals from "sensor" NB-LRRs. This helper activity does not require an intact P-loop. ADR1-L2 and another of two closely related members of this small NB-LRR family are also required for propagation of unregulated runaway cell death (rcd) in an lsd1 mutant. We demonstrate here that, in this particular context, ADR1-L2 function is P-loop dependent. We generated an autoactive missense mutation, ADR1-L2D484V, in a small homology motif termed MHD. Expression of ADR1-L2D848V leads to dwarfed plants that exhibit increased disease resistance and constitutively high SA levels. The morphological phenotype also requires an intact P-loop, suggesting that these ADR1-L2D484V phenotypes reflect canonical activation of this NB-LRR protein. We used ADR1-L2D484V to define genetic requirements for signaling. Signaling from ADR1-L2D484V does not require NADPH oxidase and is negatively regulated by EDS1 and AtMC1. Transcriptional regulation of ADR1-L2D484V is correlated with its phenotypic outputs; these outputs are both SA-dependent and -independent. The genetic requirements for ADR1-L2D484V activity resemble those that regulate an SA-gradient-dependent signal amplification of defense and cell death signaling initially observed in the absence of LSD1. Importantly, ADR1-L2D484V autoactivation signaling is controlled by both EDS1 and SA in separable, but linked pathways. These data allows us to propose a genetic model that provides insight into an SA-dependent feedback regulation loop, which, surprisingly, includes ADR1-L2.

MeSH Terms
Arabidopsis/genetics,immunology Arabidopsis Proteins/genetics,metabolism Cell Death/genetics DNA-Binding Proteins/genetics,metabolism Gene Expression Regulation, Plant Immunity, Innate/genetics Leucine-Rich Repeat Proteins Mutation, Missense Nuclear Proteins/genetics Plant Diseases/genetics,immunology Plant Immunity Proteins/genetics Salicylic Acid/metabolism Signal Transduction
Chemicals
ADR1 protein, Arabidopsis Arabidopsis Proteins DNA-Binding Proteins EDS1 protein, Arabidopsis Leucine-Rich Repeat Proteins Nuclear Proteins Proteins RCD1 protein, Arabidopsis Salicylic Acid
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Roberts Melinda
Department of Biology, University of North Carolina, Chapel Hill, North Carolina, USA.
Tang Saijun
Stallmann Anna
Dangl Jeffery L
Bonardi Vera
Conflict of Interest

The authors have declared that no competing interests exist.

References (59)
59 references, click to expand
  1. Salicylic acid in plant defence--the players and protagonists.
    Curr Opin Plant Biol. 2007 Oct;10(5):466-72 PMID: 17904410
  2. The NLRC4 inflammasome receptors for bacterial flagellin and type III secretion apparatus.
    Nature. 2011 Sep 14;477(7366):596-600 PMID: 21918512
  3. A gain-of-function mutation in a plant disease resistance gene leads to constitutive activation of downstream signal transduction pathways in suppressor of npr1-1, constitutive 1.
    Plant Cell. 2003 Nov;15(11):2636-46 PMID: 14576290
  4. Antagonistic control of oxidative stress-induced cell death in Arabidopsis by two related, plant-specific zinc finger proteins.
    Proc Natl Acad Sci U S A. 2003 May 27;100(11):6831-6 PMID: 12732715
  5. Innate immune recognition of bacterial ligands by NAIPs determines inflammasome specificity.
    Nature. 2011 Aug 28;477(7366):592-5 PMID: 21874021
  6. Characterization of eds1, a mutation in Arabidopsis suppressing resistance to Peronospora parasitica specified by several different RPP genes.
    Plant Cell. 1996 Nov;8(11):2033-46 PMID: 8953768
  7. Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation.
    J Biosci Bioeng. 2007 Jul;104(1):34-41 PMID: 17697981
  8. The plant immune system.
    Nature. 2006 Nov 16;444(7117):323-9 PMID: 17108957
  9. Runaway cell death, but not basal disease resistance, in lsd1 is SA- and NIM1/NPR1-dependent.
    Plant J. 2002 Feb;29(3):381-91 PMID: 11844114
  10. Nuclear accumulation of the Arabidopsis immune receptor RPS4 is necessary for triggering EDS1-dependent defense.
    Curr Biol. 2007 Dec 4;17(23):2023-9 PMID: 17997306
  11. Dual role of desferrioxamine in Erwinia amylovora pathogenicity.
    Mol Plant Microbe Interact. 1998 Aug;11(8):734-42 PMID: 9675889
  12. Enhanced disease susceptibility 1 and salicylic acid act redundantly to regulate resistance gene-mediated signaling.
    PLoS Genet. 2009 Jul;5(7):e1000545 PMID: 19578402
  13. Direct interaction between the Arabidopsis disease resistance signaling proteins, EDS1 and PAD4.
    EMBO J. 2001 Oct 1;20(19):5400-11 PMID: 11574472
  14. Initiation of runaway cell death in an Arabidopsis mutant by extracellular superoxide.
    Science. 1996 Sep 27;273(5283):1853-6 PMID: 8791589
  15. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.
    Plant J. 1998 Dec;16(6):735-43 PMID: 10069079
  16. Arabidopsis SENESCENCE-ASSOCIATED GENE101 stabilizes and signals within an ENHANCED DISEASE SUSCEPTIBILITY1 complex in plant innate immunity.
    Plant Cell. 2005 Sep;17(9):2601-13 PMID: 16040633
  17. AAA+ proteins: have engine, will work.
    Nat Rev Mol Cell Biol. 2005 Jul;6(7):519-29 PMID: 16072036
  18. The HSP90-SGT1 chaperone complex for NLR immune sensors.
    Annu Rev Plant Biol. 2009;60:139-64 PMID: 19014346
  19. A new eye on NLR proteins: focused on clarity or diffused by complexity?
    Curr Opin Immunol. 2012 Feb;24(1):41-50 PMID: 22305607
  20. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors.
    Annu Rev Plant Biol. 2009;60:379-406 PMID: 19400727
  21. Plant immunity: the EDS1 regulatory node.
    Curr Opin Plant Biol. 2005 Aug;8(4):383-9 PMID: 15939664
  22. A versatile and reliable two-component system for tissue-specific gene induction in Arabidopsis.
    Plant Physiol. 2006 Aug;141(4):1194-204 PMID: 16896232
  23. An autoactive mutant of the M flax rust resistance protein has a preference for binding ATP, whereas wild-type M protein binds ADP.
    Mol Plant Microbe Interact. 2011 Aug;24(8):897-906 PMID: 21539434
  24. RAR1 and NDR1 contribute quantitatively to disease resistance in Arabidopsis, and their relative contributions are dependent on the R gene assayed.
    Plant Cell. 2002 May;14(5):1005-15 PMID: 12034893
  25. How complex are intracellular immune receptor signaling complexes?
    Front Plant Sci. 2012 Oct 23;3:237 PMID: 23109935
  26. STAND, a class of P-loop NTPases including animal and plant regulators of programmed cell death: multiple, complex domain architectures, unusual phyletic patterns, and evolution by horizontal gene transfer.
    J Mol Biol. 2004 Oct 8;343(1):1-28 PMID: 15381417
  27. The tomato R gene products I-2 and MI-1 are functional ATP binding proteins with ATPase activity.
    Plant Cell. 2002 Nov;14(11):2929-39 PMID: 12417711
  28. Disruption of PAMP-induced MAP kinase cascade by a Pseudomonas syringae effector activates plant immunity mediated by the NB-LRR protein SUMM2.
    Cell Host Microbe. 2012 Mar 15;11(3):253-63 PMID: 22423965
  29. Activation of plant pattern-recognition receptors by bacteria.
    Curr Opin Microbiol. 2011 Feb;14(1):54-61 PMID: 21215683
  30. Mutations in the NB-ARC domain of I-2 that impair ATP hydrolysis cause autoactivation.
    Plant Physiol. 2006 Apr;140(4):1233-45 PMID: 16489136
  31. A high-throughput method for quantifying growth of phytopathogenic bacteria in Arabidopsis thaliana.
    Plant J. 2001 Nov;28(4):475-81 PMID: 11737784
  32. RAR1 positively controls steady state levels of barley MLA resistance proteins and enables sufficient MLA6 accumulation for effective resistance.
    Plant Cell. 2004 Dec;16(12):3480-95 PMID: 15548741
  33. Unlinked noncomplementation: isolation of new conditional-lethal mutations in each of the tubulin genes of Saccharomyces cerevisiae.
    Genetics. 1988 Jun;119(2):249-60 PMID: 3294100
  34. Arabidopsis RIN4 negatively regulates disease resistance mediated by RPS2 and RPM1 downstream or independent of the NDR1 signal modulator and is not required for the virulence functions of bacterial type III effectors AvrRpt2 or AvrRpm1.
    Plant Cell. 2004 Oct;16(10):2822-35 PMID: 15361584
  35. NB-LRR proteins: pairs, pieces, perception, partners, and pathways.
    Curr Opin Plant Biol. 2010 Aug;13(4):472-7 PMID: 20483655
  36. Pathogen-induced, NADPH oxidase-derived reactive oxygen intermediates suppress spread of cell death in Arabidopsis thaliana.
    Nat Genet. 2005 Oct;37(10):1130-4 PMID: 16170317
  37. Expanded functions for a family of plant intracellular immune receptors beyond specific recognition of pathogen effectors.
    Proc Natl Acad Sci U S A. 2011 Sep 27;108(39):16463-8 PMID: 21911370
  38. Antagonistic control of disease resistance protein stability in the plant immune system.
    Science. 2005 Aug 5;309(5736):929-32 PMID: 15976272
  39. STANDing strong, resistance proteins instigators of plant defence.
    Curr Opin Plant Biol. 2009 Aug;12(4):427-36 PMID: 19394891
  40. Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis.
    Proc Natl Acad Sci U S A. 1998 Aug 18;95(17):10306-11 PMID: 9707643
  41. Isochorismate synthase is required to synthesize salicylic acid for plant defence.
    Nature. 2001 Nov 29;414(6863):562-5 PMID: 11734859
  42. bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection.
    EMBO J. 2006 Sep 20;25(18):4400-11 PMID: 16957775
  43. Plant immunity: towards an integrated view of plant-pathogen interactions.
    Nat Rev Genet. 2010 Aug;11(8):539-48 PMID: 20585331
  44. Constitutive gain-of-function mutants in a nucleotide binding site-leucine rich repeat protein encoded at the Rx locus of potato.
    Plant J. 2002 Oct;32(2):195-204 PMID: 12383085
  45. Motifs specific for the ADR1 NBS-LRR protein family in Arabidopsis are conserved among NBS-LRR sequences from both dicotyledonous and monocotyledonous plants.
    Planta. 2005 Jun;221(4):597-601 PMID: 15889273
  46. Localization, conjugation, and function of salicylic acid in tobacco during the hypersensitive reaction to tobacco mosaic virus.
    Proc Natl Acad Sci U S A. 1992 Mar 15;89(6):2480-4 PMID: 1549613
  47. Arabidopsis mutants simulating disease resistance response.
    Cell. 1994 May 20;77(4):565-77 PMID: 8187176
  48. A rapid biosensor-based method for quantification of free and glucose-conjugated salicylic acid.
    Plant Methods. 2008 Dec 31;4:28 PMID: 19117519
  49. Salicylic acid-independent ENHANCED DISEASE SUSCEPTIBILITY1 signaling in Arabidopsis immunity and cell death is regulated by the monooxygenase FMO1 and the Nudix hydrolase NUDT7.
    Plant Cell. 2006 Apr;18(4):1038-51 PMID: 16531493
  50. Benzothiadiazole, a novel class of inducers of systemic acquired resistance, activates gene expression and disease resistance in wheat.
    Plant Cell. 1996 Apr;8(4):629-43 PMID: 8624439
  51. The disease resistance signaling components EDS1 and PAD4 are essential regulators of the cell death pathway controlled by LSD1 in Arabidopsis.
    Plant Cell. 2001 Oct;13(10):2211-24 PMID: 11595797
  52. Autoactive alleles of the flax L6 rust resistance gene induce non-race-specific rust resistance associated with the hypersensitive response.
    Mol Plant Microbe Interact. 2005 Jun;18(6):570-82 PMID: 15986927
  53. Plant intracellular innate immune receptor Resistance to Pseudomonas syringae pv. maculicola 1 (RPM1) is activated at, and functions on, the plasma membrane.
    Proc Natl Acad Sci U S A. 2011 May 3;108(18):7619-24 PMID: 21490299
  54. Resistance proteins: molecular switches of plant defence.
    Curr Opin Plant Biol. 2006 Aug;9(4):383-90 PMID: 16713729
  55. A mutation in Arabidopsis that leads to constitutive expression of systemic acquired resistance.
    Plant Cell. 1994 Dec;6(12):1845-57 PMID: 7866028
  56. Arabidopsis type I metacaspases control cell death.
    Science. 2010 Dec 3;330(6009):1393-7 PMID: 21097903
  57. Arabidopsis is susceptible to infection by a downy mildew fungus.
    Plant Cell. 1990 May;2(5):437-45 PMID: 2152169
  58. An evolutionarily conserved mediator of plant disease resistance gene function is required for normal Arabidopsis development.
    Dev Cell. 2002 Jun;2(6):807-17 PMID: 12062092
  59. EDS1, an essential component of R gene-mediated disease resistance in Arabidopsis has homology to eukaryotic lipases.
    Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):3292-7 PMID: 10077677
Article Info
Journal
PLoS genetics
Abbr.
PLoS Genet
ISSN
1553-7404
Published
2013-00-00
Epub
2013-00-25
Pages
e1003465
Language
English
Region
United States
NLM ID
101239074
PMCID
PMC3636237
Subset
IM
Grants
NIGMS NIH HHS · R01 GM057171 · United States
Howard Hughes Medical Institute · United States
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Analysis Services

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