Home LiteratureArticle Details
PMID: 2406561 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae.

Molecular and cellular biology ·Vol. 10 ·No. 3 ·1990-03-00 ·Pages 1145-52

Li HD, Zagorski J, Fournier MJ

Abstract

Repression of an essential nucleolar small nuclear RNA (snRNA) gene of Saccharomyces cerevisiae was shown to result in impaired production of 18S rRNA. The effect, observed for an snRNA species of 128 nucleotides (snR128), was evident within one generation after the onset of SNR128 gene repression and correlated well with depletion of the snRNA. The steady-state mass ratio of 18S RNA to 25S RNA decreased eightfold over the course of the analysis. Results from pulse-chase assays revealed the basis of the imbalance to be underaccumulation of 18S RNA and its 20S precursor. This effect appears to result from impairment of processing of the 35S rRNA transcript at sites that define the 20S species coupled with rapid turnover of unstable intermediates. Possible bases for the effects observed are discussed. A common U14 designation is proposed for the structurally related yeast snRNA and 4.5S hybRNAs from amphibians and mammals.

MeSH Terms
Base Sequence Cloning, Molecular Genetic Vectors Kinetics Molecular Sequence Data RNA Processing, Post-Transcriptional RNA, Fungal/metabolism RNA, Ribosomal/metabolism RNA, Ribosomal, 18S/metabolism RNA, Small Nuclear/physiology Saccharomyces cerevisiae/genetics Sequence Homology, Nucleic Acid
Chemicals
RNA, Fungal RNA, Ribosomal RNA, Ribosomal, 18S RNA, Small Nuclear
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Li H D
Department of Biochemistry, Lederle Graduate Research Center, University of Massachusetts, Amherst 01003.
Zagorski J
Fournier M J
References (39)
39 references, click to expand
  1. Small molecular weight monodisperse nuclear RNA.
    J Mol Biol. 1968 Dec;38(3):289-304 PMID: 5718554
  2. An in vitro interaction between the human U3 snRNP and 28S rRNA sequences near the alpha-sarcin site.
    Nucleic Acids Res. 1988 Nov 25;16(22):10493-509 PMID: 2974535
  3. Ribosomal RNA synthesis in Saccharomyces cerevisiae.
    J Mol Biol. 1972 Mar 28;65(2):227-42 PMID: 4557192
  4. Small RNA species of the HeLa cell: metabolism and subcellular localization.
    Cell. 1976 May;8(1):19-31 PMID: 954090
  5. Simple Mendelian inheritance of the repeating yeast ribosomal DNA genes.
    Cold Spring Harb Symp Quant Biol. 1978;42 Pt 2:1201-7 PMID: 354850
  6. Some characteristics of processing sites in ribosomal precursor RNA of yeast.
    Nucleic Acids Res. 1980 Jul 11;8(13):2907-20 PMID: 6253896
  7. The structure of the yeast ribosomal RNA genes. 2. The nucleotide sequence of the initiation site for ribosomal RNA transcription.
    Nucleic Acids Res. 1980 Nov 11;8(21):4919-26 PMID: 7003545
  8. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae.
    Nucleic Acids Res. 1980 Dec 11;8(23):5779-94 PMID: 7008030
  9. The structure of the yeast ribosomal RNA genes. 3. Precise mapping of the 18 S and 25 S rRNA genes and structure of the adjacent regions.
    Nucleic Acids Res. 1981 Feb 25;9(4):789-99 PMID: 7015285
  10. The nucleotide sequence of the intergenic region between the 5.8S and 26S rRNA genes of the yeast ribosomal RNA operon. Possible implications for the interaction between 5.8S and 26S rRNA and the processing of the primary transcript.
    Nucleic Acids Res. 1981 Oct 10;9(19):4847-62 PMID: 7312619
  11. Base-pairing interactions between small nuclear RNAs and nuclear RNA precursors as revealed by psoralen cross-linking in vivo.
    Cell. 1981 Nov;26(3 Pt 1):363-70 PMID: 6173132
  12. SnRNAs, SnRNPs, and RNA processing.
    Annu Rev Biochem. 1982;51:617-54 PMID: 6180681
  13. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  14. Yeast contains small nuclear RNAs encoded by single copy genes.
    Cell. 1983 Dec;35(3 Pt 2):743-51 PMID: 6197183
  15. Sequences that regulate the divergent GAL1-GAL10 promoter in Saccharomyces cerevisiae.
    Mol Cell Biol. 1984 Aug;4(8):1440-8 PMID: 6092912
  16. Genetic analysis of small nuclear RNAs in Saccharomyces cerevisiae: viable sextuple mutant.
    Mol Cell Biol. 1988 Aug;8(8):3150-9 PMID: 2905424
  17. Characterization of an SNR gene locus in Saccharomyces cerevisiae that specifies both dispensible and essential small nuclear RNAs.
    Mol Cell Biol. 1988 Aug;8(8):3282-90 PMID: 2850487
  18. U3, U8 and U13 comprise a new class of mammalian snRNPs localized in the cell nucleolus.
    EMBO J. 1989 Oct;8(10):3113-9 PMID: 2531075
  19. Multiple states of U3 RNA in Novikoff hepatoma nucleoli.
    Biochemistry. 1984 Nov 6;23(23):5421-5 PMID: 6210104
  20. Purification and partial characterization of a nucleolar scleroderma antigen (Mr = 34,000; pI, 8.5) rich in NG,NG-dimethylarginine.
    J Biol Chem. 1985 Nov 15;260(26):14304-10 PMID: 2414294
  21. Deletion of a yeast small nuclear RNA gene impairs growth.
    EMBO J. 1985 Dec 30;4(13B):3873-8 PMID: 3004976
  22. Genetic complementation in the Xenopus oocyte: co-expression of sea urchin histone and U7 RNAs restores 3' processing of H3 pre-mRNA in the oocyte.
    EMBO J. 1986 Jul;5(7):1675-82 PMID: 2943587
  23. U2 RNA from yeast is unexpectedly large and contains homology to vertebrate U4, U5, and U6 small nuclear RNAs.
    Cell. 1986 Oct 10;47(1):49-59 PMID: 3530502
  24. A low-molecular-weight RNA from mouse ascites cells that hybridizes to both 18S rRNA and mRNA sequences.
    Proc Natl Acad Sci U S A. 1986 Oct;83(19):7261-5 PMID: 2429302
  25. Compensatory mutations suggest that base-pairing with a small nuclear RNA is required to form the 3' end of H3 messenger RNA.
    Nature. 1986 Oct 30-Nov 5;323(6091):777-81 PMID: 3022153
  26. Small nuclear RNAs from Saccharomyces cerevisiae: unexpected diversity in abundance, size, and molecular complexity.
    Proc Natl Acad Sci U S A. 1986 Nov;83(21):8097-101 PMID: 3534883
  27. An essential yeast snRNA with a U5-like domain is required for splicing in vivo.
    Cell. 1987 Jun 5;49(5):613-24 PMID: 3555841
  28. Both conserved signals on mammalian histone pre-mRNAs associate with small nuclear ribonucleoproteins during 3' end formation in vitro.
    Mol Cell Biol. 1987 May;7(5):1663-72 PMID: 2955216
  29. An essential snRNA from S. cerevisiae has properties predicted for U4, including interaction with a U6-like snRNA.
    Cell. 1987 Aug 14;50(4):585-92 PMID: 2440583
  30. S. cerevisiae U1 RNA is large and has limited primary sequence homology to metazoan U1 snRNA.
    Cell. 1987 Aug 14;50(4):593-602 PMID: 2440584
  31. Saccharomyces cerevisiae has a U1-like small nuclear RNA with unexpected properties.
    Science. 1987 Sep 18;237(4821):1484-7 PMID: 3306922
  32. The yeast homologue of U3 snRNA.
    EMBO J. 1987 Jul;6(7):2145-55 PMID: 3308452
  33. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA.
    EMBO J. 1987 Dec 20;6(13):4169-75 PMID: 3327689
  34. SnR30: a new, essential small nuclear RNA from Saccharomyces cerevisiae.
    Nucleic Acids Res. 1988 Jun 24;16(12):5291-303 PMID: 2898766
  35. Sequence and genetic analysis of a dispensible 189 nucleotide snRNA from Saccharomyces cerevisiae.
    Nucleic Acids Res. 1988 Jun 24;16(12):5587-601 PMID: 3290853
  36. Specific contacts between mammalian U7 snRNA and histone precursor RNA are indispensable for the in vitro 3' RNA processing reaction.
    EMBO J. 1988 Mar;7(3):801-8 PMID: 3396543
  37. Spliceosomal RNA U6 is remarkably conserved from yeast to mammals.
    Nature. 1988 Jul 21;334(6179):213-8 PMID: 3041282
  38. Homologous genes for mouse 4.5S hybRNA are found in all eukaryotes and their low molecular weight RNA transcripts intermolecularly hybridize with eukaryotic 18S ribosomal RNAs.
    Nucleic Acids Res. 1988 Jul 11;16(13):6041-56 PMID: 3399384
  39. Low molecular weight RNA associated with 28 s nucleolar RNA.
    J Mol Biol. 1970 Feb 14;47(3):505-15 PMID: 5418169
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1990-03-00
Pages
1145-52
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC360983
Subset
IM
Grants
NIGMS NIH HHS · GM19351 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]