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PMID: 24202669 Published · ppublish English Journal Article

Characterization of the nuclear ribosomal DNA units and phylogeny of Beta L. wild forms and cultivated beets.

Santoni S, Bervillé A

Abstract

The nuclear rDNA units of species belonging to the genus Beta were characterized using heterologous probes of flax (entire unit and 25S) and sunflower (6.1-kb Eco fragment containing the 18S, the entire intergenic spacer (IGS) and a small piece of the 25S). The physical maps of one species from each section of the genus was constructed by localization of the EcoRI, BamHI, HindIII, KpnI and SacI restriction sites. For each species a single individual was used to obtain total DNA. The major unit length is 11 kb, but variant length units at 10.4, 10.7 and 11.3 kb were found as minor forms. However, some individuals carried the 10.4-kb or the 10.7-kb variant length unit as the major form. For the variant length units of one species the restriction sites were conserved, so that the variation in length occurred in the IGS. The EcoRI fragment corresponding to the intergenic spacer appeared to be the best indicator of variation. The variable sequence in the IGS sometimes generated new restriction sites for the Corollinae and mainly, did so, for the Vulgares relative to the Procumbentes. The variable sites were able, to differentiate the three sections and species within the sections. Corollinae species belong to two different groups according to the absence or the presence of the BamHI (B4) site. The Vulgares species contain several unit types. We proposed that all the unit types derived from a unique unit, V-11-2.3, by unequal crossing-overs or conversion. We also supposed a homogenization mechanism because we found individuals homogeneous for every unit type. Among the cultivated beets, all the root beets contain only one rDNA unit type, V-11-2.9. Thus, we supposed that the common unit type of cultivated beets either brings a physiological advantage or is strictly linked to a favorable allele. It is likely that the rDNA unit of B. maritima were eliminated from sugar beet by the breeding process since they were not recovered. Whatever the process, we deduced that all the cultivated forms of beets likely originated in a unique plant ascendant.A phylogenic tree of the genus is proposed, based on the nuclear rDNA maps, and subsequently discussed relative to the systematic tree and other molecular phylogenies.

Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Santoni S
INRA Dijon, Station d'Amélioration des Plantes, BV 1540, F-21034, Dijon, Cedex, France.
Bervillé A
References (16)
16 references, click to expand
  1. The Relationship between Satellite Deoxyribonucleic Acid, Ribosomal Ribonucleic Acid Gene Redundancy, and Genome Size in Plants.
    Plant Physiol. 1975 Mar;55(3):496-501 PMID: 16659109
  2. Cytoplasmic male sterility and nuclear restorer genes in a natural population of Beta maritima: genetical and molecular aspects.
    Theor Appl Genet. 1987 Sep;73(5):625-9 PMID: 24241183
  3. Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.
    Proc Natl Acad Sci U S A. 1984 Dec;81(24):8014-8 PMID: 6096873
  4. Structure and variability of nuclear ribosomal genes in the genus Helianthus.
    Theor Appl Genet. 1988 Oct;76(4):481-9 PMID: 24232264
  5. Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer.
    Plant Mol Biol. 1987 Sep;9(5):509-20 PMID: 24277137
  6. Identification of a short rDNA spacer sequence highly specific of a tomato line containing Tm-1 gene introgressed from Lycopersicon hirsutum.
    Theor Appl Genet. 1990 Nov;80(5):602-8 PMID: 24221065
  7. Rapid control of purity for the cytoplasm of male-sterile seed stocks by means of a dot hybridization assay.
    Mol Cell Probes. 1991 Feb;5(1):1-9 PMID: 2017200
  8. Organelle genome diversity in sugar beet with normal and different sources of male sterile cytoplasms.
    Theor Appl Genet. 1985 Dec;71(2):166-71 PMID: 24247378
  9. Variation in the ribosomal DNA intergenic spacer of a maize population mass-selected for high grain yield.
    Theor Appl Genet. 1990 Jun;79(6):793-800 PMID: 24226741
  10. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  11. Mathematical model for studying genetic variation in terms of restriction endonucleases.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73 PMID: 291943
  12. Use of restriction fragment length polymorphism to fingerprint beets at the genotype and species levels.
    Theor Appl Genet. 1989 Dec;78(6):847-51 PMID: 24226017
  13. Comparative restriction endonuclease analysis and molecular cloning of plastid DNAs from wild species and cultivated varieties of the genus Beta (L.).
    Theor Appl Genet. 1987 Sep;74(5):589-94 PMID: 24240214
  14. The wheat ribosomal DNA spacer region: Its structure and variation in populations and among species.
    Theor Appl Genet. 1982 Dec;63(4):337-48 PMID: 24270871
  15. Characterisation of the genes for ribosomal RNA in flax.
    Nucleic Acids Res. 1981 Mar 25;9(6):1301-9 PMID: 6262724
  16. Molecular drive: a cohesive mode of species evolution.
    Nature. 1982 Sep 9;299(5879):111-7 PMID: 7110332
Article Info
Journal
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Abbr.
Theor Appl Genet
ISSN
0040-5752
Published
1992-03-00
Pages
533-42
Language
English
Region
Germany
NLM ID
0145600
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