Home LiteratureArticle Details
PMID: 2472605 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Comparative inhibition of rabbit globin mRNA translation by modified antisense oligodeoxynucleotides.

Nucleic acids research ·Vol. 17 ·No. 11 ·1989-06-12 ·Pages 4255-73

Cazenave C, Stein CA, Loreau N, Thuong NT, Neckers LM, Subasinghe C, Hélène C, Cohen JS, Toulmé JJ

Abstract

We have studied the translation of rabbit globin mRNA in cell free systems (reticulocyte lysate and wheat germ extract) and in microinjected Xenopus oocytes in the presence of anti-sense oligodeoxynucleotides. Results obtained with the unmodified all-oxygen compounds were compared with those obtained when phosphorothioate or alpha-DNA was used. In the wheat germ system a 17-mer sequence targeted to the coding region of beta-globin mRNA was specifically inhibitory when either the unmodified phosphodiester oligonucleotide or its phosphorothioate analogue were used. In contrast no effect was observed with the alpha-oligomer. These results were ascribed to the fact that phosphorothioate oligomers elicit an RNase-H activity comparable to the all-oxygen congeners, while alpha-DNA/mRNA hybrids were a poor substrate. Microinjected Xenopus oocytes followed a similar pattern. The phosphorothioate oligomer was more efficient to prevent translation than the unmodified 17-mer. Inhibition of beta-globin synthesis was observed in the nanomolar concentration range. This result can be ascribed to the nuclease resistance of phosphorothioates as compared to natural phosphodiester linkages, alpha-oligomers were devoid of any inhibitory effect up to 30 microM. Phosphorothioate oligodeoxyribonucleotides were shown to be non-specific inhibitors of protein translation, at concentrations in the micromolar range, in both cell-free systems and oocytes. Non-specific inhibition of translation was dependent on the length of the phosphorothioate oligomer. These non-specific effects were not observed with the unmodified or the alpha-oligonucleotides.

MeSH Terms
Animals Base Sequence Binding, Competitive Cell-Free System Globins/genetics,metabolism Molecular Sequence Data Nucleic Acid Hybridization Oligonucleotide Probes/chemical synthesis,pharmacology Oocytes/metabolism Protein Biosynthesis RNA RNA, Antisense RNA, Messenger/genetics,metabolism Rabbits Reticulocytes/metabolism Ribonucleases/metabolism Thermodynamics Triticum/genetics Xenopus/genetics
Chemicals
Oligonucleotide Probes RNA, Antisense RNA, Messenger RNA Globins Ribonucleases
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Cazenave C
Laboratoire de Biophysique, INSERM U201, Paris, France.
Stein C A
Loreau N
Thuong N T
Neckers L M
Subasinghe C
Hélène C
Cohen J S
Toulmé J J
References (46)
46 references, click to expand
  1. Quantitative hybridization-arrest of mRNA in Xenopus oocytes using single-stranded complementary DNA or oligonucleotide probes.
    Nucleic Acids Res. 1985 Jul 11;13(13):4991-5004 PMID: 3875079
  2. Stepwise mechanism of HIV reverse transcriptase: primer function of phosphorothioate oligodeoxynucleotide.
    Biochemistry. 1989 Feb 7;28(3):1340-6 PMID: 2469468
  3. Inhibition of rabbit globin mRNA translation by sequence-specific oligodeoxyribonucleotides.
    Biochemistry. 1985 Oct 22;24(22):6132-8 PMID: 4084510
  4. Translation arrest by oligodeoxynucleotides complementary to mRNA coding sequences yields polypeptides of predetermined length.
    Nucleic Acids Res. 1986 Feb 11;14(3):1427-48 PMID: 3633502
  5. Specific inhibition of mRNA translation by complementary oligonucleotides covalently linked to intercalating agents.
    Proc Natl Acad Sci U S A. 1986 Mar;83(5):1227-31 PMID: 3513172
  6. alpha-DNA. I. Synthesis, characterization by high field 1H-NMR, and base-pairing properties of the unnatural hexadeoxyribonucleotide alpha-[d(CpCpTpTpCpC)] with its complement beta-[d(GpGpApApGpG)].
    Nucleic Acids Res. 1986 Jun 25;14(12):5019-35 PMID: 3725590
  7. The 35-nucleotide spliced leader sequence is common to all trypanosome messenger RNA's.
    Science. 1986 Aug 1;233(4763):569-71 PMID: 3523758
  8. The common 5' terminal sequence on trypanosome mRNAs: a target for anti-messenger oligodeoxynucleotides.
    Nucleic Acids Res. 1986 Jul 25;14(14):5605-14 PMID: 3737413
  9. The use of single-stranded DNA and RNase H to promote quantitative 'hybrid arrest of translation' of mRNA/DNA hybrids in reticulocyte lysate cell-free translations.
    Nucleic Acids Res. 1986 Aug 26;14(16):6433-51 PMID: 3018671
  10. Influence of 5' proximal secondary structure on the translational efficiency of eukaryotic mRNAs and on their interaction with initiation factors.
    J Biol Chem. 1986 Oct 25;261(30):13979-89 PMID: 3771516
  11. Anti-messenger oligodeoxynucleotides: specific inhibition of rabbit beta-globin synthesis in wheat germ extracts and Xenopus oocytes.
    Biochimie. 1986 Sep;68(9):1063-9 PMID: 3096384
  12. Destabilization of messenger RNA/complementary DNA duplexes by the elongating 80 S ribosome.
    J Biol Chem. 1986 Dec 5;261(34):16018-25 PMID: 3023338
  13. Inhibition of vesicular stomatitis virus protein synthesis and infection by sequence-specific oligodeoxyribonucleoside methylphosphonates.
    Biochemistry. 1986 Oct 7;25(20):6268-75 PMID: 3024704
  14. alpha-DNA II. Synthesis of unnatural alpha-anomeric oligodeoxyribonucleotides containing the four usual bases and study of their substrate activities for nucleases.
    Nucleic Acids Res. 1987 Apr 24;15(8):3421-37 PMID: 3575096
  15. Antisense oligodeoxynucleotides provide insight into mechanism of translation initiation of two Sendai virus mRNAs.
    J Biol Chem. 1987 Jun 5;262(16):7492-6 PMID: 2438279
  16. alpha-DNA-III. Characterization by high field 1H-NMR, anti-parallel self-recognition and conformation of the unnatural hexadeoxyribonucleotides alpha-[d(CpApTpGpCpG)] and alpha-[d(CpGpCpApTpG)]. Alpha-oligodeoxynucleotides as potential cellular probes for gene control.
    Nucleic Acids Res. 1987 May 26;15(10):4241-55 PMID: 3588292
  17. Enzymatic amplification of translation inhibition of rabbit beta-globin mRNA mediated by anti-messenger oligodeoxynucleotides covalently linked to intercalating agents.
    Nucleic Acids Res. 1987 Jun 25;15(12):4717-36 PMID: 3037483
  18. Oligo(alpha-deoxynucleotide)s covalently linked to intercalating agents: differential binding to ribo- and deoxyribopolynucleotides and stability towards nuclease digestion.
    Proc Natl Acad Sci U S A. 1987 Aug;84(15):5129-33 PMID: 3474645
  19. Comparative inhibition of chloramphenicol acetyltransferase gene expression by antisense oligonucleotide analogues having alkyl phosphotriester, methylphosphonate and phosphorothioate linkages.
    Nucleic Acids Res. 1987 Jul 24;15(14):5749-63 PMID: 3475677
  20. Oligo-[alpha]-deoxynucleotides covalently linked to an intercalating agent. Double helices with parallel strands are formed with complementary oligo-[beta]-deoxynucleotides.
    Nucleic Acids Res. 1987 Aug 11;15(15):6149-58 PMID: 3627982
  21. alpha-DNA-V. Parallel annealing, handedness and conformation of the duplex of the unnatural alpha-hexadeoxyribonucleotide alpha-[d(CpApTpGpCpG)] with its beta-complement beta-[d(GpTpApCpGpC)] deduced from high field 1H-NMR.
    Nucleic Acids Res. 1987 Sep 11;15(17):7027-44 PMID: 3658672
  22. 2D-NMR studies of the unnatural duplex alpha-d(TCTAAAC)-beta-d(AGATTTG).
    Nucleic Acids Res. 1987 Sep 25;15(18):7531-47 PMID: 3658702
  23. Inhibition of Rous sarcoma viral RNA translation by a specific oligodeoxyribonucleotide.
    Proc Natl Acad Sci U S A. 1978 Jan;75(1):285-8 PMID: 75546
  24. Secondary structure of mouse and rabbit alpha- and beta-globin mRNAs: differential accessibility of alpha and beta initiator AUG codons towards nucleases.
    Cell. 1980 Jan;19(1):91-102 PMID: 7357610
  25. The use of Xenopus oocytes for the expression of cloned genes.
    Methods Enzymol. 1983;101:370-86 PMID: 6193395
  26. Translationally associated helix-destabilizing activity in rabbit reticulocyte lysate.
    J Biol Chem. 1984 Dec 25;259(24):15597-602 PMID: 6096379
  27. Phosphorothioate analogs of oligodeoxynucleotides: inhibitors of replication and cytopathic effects of human immunodeficiency virus.
    Proc Natl Acad Sci U S A. 1987 Nov;84(21):7706-10 PMID: 3499613
  28. Double helices with parallel strands are formed by nuclease-resistant oligo-[alpha]-deoxynucleotides and oligo-[alpha]-deoxynucleotides covalently linked to an intercalating agent with complementary oligo-[beta]-deoxynucleotides.
    J Mol Biol. 1987 Aug 20;196(4):939-42 PMID: 2824791
  29. Selective elimination of mRNAs in vivo: complementary oligodeoxynucleotides promote RNA degradation by an RNase H-like activity.
    Proc Natl Acad Sci U S A. 1987 Nov;84(22):7896-900 PMID: 2825169
  30. alpha-DNA. VI: Comparative study of alpha- and beta-anomeric oligodeoxyribonucleotides in hybridization to mRNA and in cell free translation inhibition.
    Nucleic Acids Res. 1987 Dec 23;15(24):10419-36 PMID: 2447562
  31. Sequence-specific binding and photocrosslinking of alpha and beta oligodeoxynucleotides to the major groove of DNA via triple-helix formation.
    Proc Natl Acad Sci U S A. 1988 Mar;85(5):1349-53 PMID: 3422738
  32. Specific inhibition of endogenous beta-tubulin synthesis in Xenopus oocytes by anti-messenger oligodeoxynucleotides.
    Nucleic Acids Res. 1988 Mar 25;16(5):2225-33 PMID: 3357774
  33. Oligodeoxynucleotides as inhibitors of gene expression: a review.
    Cancer Res. 1988 May 15;48(10):2659-68 PMID: 3282648
  34. Antisense oligonucleotide-directed cleavage of mRNA in Xenopus oocytes and eggs.
    EMBO J. 1988 Feb;7(2):427-34 PMID: 2452730
  35. Physicochemical properties of phosphorothioate oligodeoxynucleotides.
    Nucleic Acids Res. 1988 Apr 25;16(8):3209-21 PMID: 2836790
  36. Comparative hybrid arrest by tandem antisense oligodeoxyribonucleotides or oligodeoxyribonucleoside methylphosphonates in a cell-free system.
    Nucleic Acids Res. 1988 Apr 25;16(8):3341-58 PMID: 2836793
  37. Inhibition of rabbit beta-globin synthesis by complementary oligonucleotides: identification of mRNA sites sensitive to inhibition.
    Arch Biochem Biophys. 1988 Jun;263(2):401-9 PMID: 3377510
  38. Role of RNase H in hybrid-arrested translation by antisense oligonucleotides.
    Proc Natl Acad Sci U S A. 1988 Jul;85(14):5011-5 PMID: 2839827
  39. Oligodeoxynucleoside phosphoramidates and phosphorothioates as inhibitors of human immunodeficiency virus.
    Proc Natl Acad Sci U S A. 1988 Oct;85(19):7079-83 PMID: 3174622
  40. Sequence-targeted cleavage of nucleic acids by oligo-alpha-thymidylate-phenanthroline conjugates: parallel and antiparallel double helices are formed with DNA and RNA, respectively.
    Biochemistry. 1988 Aug 9;27(16):6039-45 PMID: 2461219
  41. Destruction of a translationally controlled mRNA in Xenopus oocytes delays progesterone-induced maturation.
    Genes Dev. 1988 Oct;2(10):1296-306 PMID: 3203907
  42. Delivery of c-myc antisense phosphorothioate oligodeoxynucleotides to hematopoietic cells in culture by liposome fusion: specific reduction in c-myc protein expression correlates with inhibition of cell growth and DNA synthesis.
    Curr Top Microbiol Immunol. 1988;141:282-9 PMID: 3063445
  43. Antisense oligodeoxyribonucleotide-directed cleavage of maternal mRNA in Xenopus oocytes and embryos.
    Gene. 1988 Dec 10;72(1-2):267-75 PMID: 2468567
  44. Phosphorothioate and normal oligodeoxyribonucleotides with 5'-linked acridine: characterization and preliminary kinetics of cellular uptake.
    Gene. 1988 Dec 10;72(1-2):333-41 PMID: 2854090
  45. Antimessenger oligodeoxyribonucleotides: an alternative to antisense RNA for artificial regulation of gene expression--a review.
    Gene. 1988 Dec 10;72(1-2):51-8 PMID: 2468575
  46. Characterization of sequence-specific oligodeoxyribonucleoside methylphosphonates and their interaction with rabbit globin mRNA.
    Biochemistry. 1985 Jul 16;24(15):4041-6 PMID: 2413882
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1989-06-12
Pages
4255-73
Language
English
Region
England
NLM ID
0411011
PMCID
PMC317933
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]