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PMID: 2557623 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Evolution of a bifunctional enzyme: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.

Bazan JF, Fletterick RJ, Pilkis SJ

Abstract

The bifunctional rat liver enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase (ATP:D-fructose-6-phosphate 2-phosphotransferase/D-fructose-2,6-bisphosphate 2-phosphohydrolase, EC 2.7.1.105/EC 3.1.3.46) is constructed of two independent catalytic domains. We present evidence that the kinase and bisphosphatase halves of the bifunctional enzyme are, respectively, structurally similar to the glycolytic enzymes 6-phosphofructo-1-kinase and phosphoglycerate mutase. Computer-assisted modeling of the C-terminal bisphosphatase domain reveals a hydrophobic core and active site residue constellation equivalent to the yeast mutase structure; structural differences map to length-variable, surface-located loops. Sequence patterns derived from the structural alignment of mutases and the bisphosphatase further detect a significant similarity to a family of acid phosphatases. The N-terminal kinase domain, in turn, is predicted to form a nucleotide-binding fold that is analogous to a segment of 6-phosphofructo-1-kinase, suggesting that these unrelated enzymes bind fructose 6-phosphate and ATP substrates in a similar geometry. This analysis indicates that the bifunctional enzyme is the likely product of gene fusion of kinase and mutase/phosphatase catalytic units.

MeSH Terms
Acid Phosphatase/genetics Amino Acid Sequence Animals Biological Evolution Bisphosphoglycerate Mutase/genetics Humans Models, Structural Molecular Sequence Data Phosphofructokinase-2 Phosphoric Monoester Hydrolases/genetics Phosphotransferases/genetics Protein Conformation Sequence Homology, Nucleic Acid Software
Chemicals
Phosphotransferases Phosphofructokinase-2 Acid Phosphatase Phosphoric Monoester Hydrolases Bisphosphoglycerate Mutase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Bazan J F
Department of Biochemistry and Biophysics, University of California, San Francisco 94143.
Fletterick R J
Pilkis S J
References (43)
43 references, click to expand
  1. The Protein Data Bank: a computer-based archival file for macromolecular structures.
    J Mol Biol. 1977 May 25;112(3):535-42 PMID: 875032
  2. Human lysosomal acid phosphatase: cloning, expression and chromosomal assignment.
    EMBO J. 1988 Aug;7(8):2343-50 PMID: 3191910
  3. The enzymology of 2,3-bisphosphoglycerate.
    Adv Enzymol Relat Areas Mol Biol. 1980;51:211-53 PMID: 6255773
  4. Relation between structure and function of alpha/beta-proteins.
    Q Rev Biophys. 1980 Aug;13(3):317-38 PMID: 7012893
  5. Structure and activity of phosphoglycerate mutase.
    Philos Trans R Soc Lond B Biol Sci. 1981 Jun 26;293(1063):121-30 PMID: 6115412
  6. Human prostatic acid phosphatase: a histidine phosphatase.
    Ann N Y Acad Sci. 1982;390:27-51 PMID: 6124201
  7. Crystal structure of the complex of phosphofructokinase from Escherichia coli with its reaction products.
    J Mol Biol. 1988 Dec 20;204(4):973-94 PMID: 2975709
  8. Pattern matching methods in protein sequence comparison and structure prediction.
    Protein Eng. 1988 Jul;2(2):77-86 PMID: 3072565
  9. Isolation, characterization, and structure of a mutant 89 Arg----Cys bisphosphoglycerate mutase. Implication of the active site in the mutation.
    J Biol Chem. 1989 May 15;264(14):7837-43 PMID: 2542247
  10. Sequence of the 5'-flanking region of the rat 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase gene: regulation by glucocorticoids.
    Biochem Biophys Res Commun. 1989 Jul 31;162(2):753-60 PMID: 2547373
  11. Expression of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase and its kinase domain in Escherichia coli.
    Proc Natl Acad Sci U S A. 1989 Oct;86(19):7316-20 PMID: 2552438
  12. The amino acid sequence of yeast phosphoglycerate mutase.
    Proc R Soc Lond B Biol Sci. 1982 Apr 22;215(1198):19-44 PMID: 6127696
  13. Intermediates in the phosphoglycerate mutase and bisphosphoglycerate synthase reactions.
    Methods Enzymol. 1982;87:42-51 PMID: 6294454
  14. The nucleotide sequence of the yeast PHO5 gene: a putative precursor of repressible acid phosphatase contains a signal peptide.
    Nucleic Acids Res. 1983 Mar 25;11(6):1657-72 PMID: 6300772
  15. Evidence for two catalytic sites on 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase. Dynamics of substrate exchange and phosphoryl enzyme formation.
    J Biol Chem. 1984 Jan 25;259(2):949-58 PMID: 6319392
  16. Amino acid sequence of the phosphorylation site of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.
    J Biol Chem. 1984 Jun 25;259(12):7673-81 PMID: 6330071
  17. Differential effects of proteolysis and protein modification on the activities of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.
    J Biol Chem. 1984 Nov 10;259(21):13096-103 PMID: 6092363
  18. Structural analysis of the two tandemly repeated acid phosphatase genes in yeast.
    Nucleic Acids Res. 1984 Oct 25;12(20):7721-39 PMID: 6093051
  19. Phosphate-binding sequences in nucleotide-binding proteins.
    FEBS Lett. 1985 Jul 1;186(1):1-7 PMID: 2989003
  20. Refined structure of alkaline phosphatase from Escherichia coli at 2.8 A resolution.
    J Mol Biol. 1985 Nov 20;186(2):417-33 PMID: 3910843
  21. Isolation and characterization of the structural gene for secreted acid phosphatase from Schizosaccharomyces pombe.
    J Biol Chem. 1986 Feb 25;261(6):2936-41 PMID: 3005272
  22. Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint.
    J Mol Biol. 1986 Jan 5;187(1):101-7 PMID: 3959077
  23. Molecular cloning and sequencing of the human erythrocyte 2,3-bisphosphoglycerate mutase cDNA: revised amino acid sequence.
    EMBO J. 1986 Sep;5(9):2275-83 PMID: 3023066
  24. Isolation and characterization of cDNA encoding rabbit reticulocyte 2,3-bisphosphoglycerate synthase.
    Gene. 1986;44(2-3):185-91 PMID: 3023182
  25. Hormonal modulation of key hepatic regulatory enzymes in the gluconeogenic/glycolytic pathway.
    Ann N Y Acad Sci. 1986;478:1-19 PMID: 2879498
  26. The rabbit muscle phosphofructokinase gene. Implications for protein structure, function, and tissue specificity.
    J Biol Chem. 1987 Mar 25;262(9):4195-9 PMID: 2951385
  27. Profile analysis: detection of distantly related proteins.
    Proc Natl Acad Sci U S A. 1987 Jul;84(13):4355-8 PMID: 3474607
  28. The structure of the promoter and amino terminal region of the pH 2.5 acid phosphatase structural gene (appA) of E. coli: a negative control of transcription mediated by cyclic AMP.
    Biochimie. 1987 Mar;69(3):215-21 PMID: 3038201
  29. Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes.
    J Mol Biol. 1987 Feb 20;193(4):775-91 PMID: 2441069
  30. Rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. Identification of essential sulfhydryl residues in the primary sequence of the enzyme.
    J Biol Chem. 1987 Aug 25;262(24):11714-20 PMID: 3040713
  31. Active site sequence of hepatic fructose-2,6-bisphosphatase. Homology in primary structure with phosphoglycerate mutase.
    J Biol Chem. 1987 Sep 15;262(26):12672-5 PMID: 3040762
  32. Evidence for dispensable sequences inserted into a nucleotide fold.
    Science. 1987 Sep 25;237(4822):1614-8 PMID: 3306924
  33. Analysis of side-chain orientations in homologous proteins.
    J Mol Biol. 1987 Jul 5;196(1):175-98 PMID: 3309349
  34. Isolation of a cDNA encoding the muscle-specific subunit of human phosphoglycerate mutase.
    J Biol Chem. 1987 Oct 25;262(30):14612-7 PMID: 2822696
  35. Functional homology of 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphoglycerate mutase, and 2,3-bisphosphoglycerate mutase.
    J Biol Chem. 1987 Dec 15;262(35):16808-15 PMID: 2824507
  36. Complete amino acid sequence of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase.
    J Biol Chem. 1988 Jan 15;263(2):839-49 PMID: 2826464
  37. Molecular cloning and sequence analysis of cDNA encoding human prostatic acid phosphatase.
    FEBS Lett. 1988 Aug 29;236(2):275-81 PMID: 2842184
  38. Expression of the bisphosphatase domain of rat liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase in Escherichia coli.
    Proc Natl Acad Sci U S A. 1988 Sep;85(18):6642-6 PMID: 2842783
  39. Isolation of a cDNA encoding the B isozyme of human phosphoglycerate mutase (PGAM) and characterization of the PGAM gene family.
    J Biol Chem. 1988 Nov 15;263(32):16899-905 PMID: 2846553
  40. Sequence of the human erythrocyte phosphoglycerate mutase by microsequencer and mass spectrometry.
    J Biol Chem. 1988 Nov 15;263(32):16906-10 PMID: 2846554
  41. Viral cysteine proteases are homologous to the trypsin-like family of serine proteases: structural and functional implications.
    Proc Natl Acad Sci U S A. 1988 Nov;85(21):7872-6 PMID: 3186696
  42. Molecular cloning and nucleotide sequence of murine 2,3-bisphosphoglycerate mutase cDNA.
    Biochem Biophys Res Commun. 1988 Oct 31;156(2):874-81 PMID: 2847721
  43. Structure and control of phosphofructokinase from Bacillus stearothermophilus.
    Nature. 1979 Jun 7;279(5713):500-4 PMID: 156307
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1989-12-00
Pages
9642-6
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC298557
Subset
IM
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