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PMID: 2644621 Published · ppublish English Journal Article

Codon usage in plant genes.

Nucleic acids research ·Vol. 17 ·No. 2 ·1989-01-25 ·Pages 477-98

Murray EE, Lotzer J, Eberle M

Abstract

We have examined codon bias in 207 plant gene sequences collected from Genbank and the literature. When this sample was further divided into 53 monocot and 154 dicot genes, the pattern of relative use of synonymous codons was shown to differ between these taxonomic groups, primarily in the use of G + C in the degenerate third base. Maize and soybean codon bias were examined separately and followed the monocot and dicot codon usage patterns respectively. Codon preference in ribulose 1,5 bisphosphate and chlorophyll a/b binding protein, two of the most abundant proteins in leaves was investigated. These highly expressed are more restricted in their codon usage than plant genes in general.

MeSH Terms
Amino Acid Sequence Base Composition Base Sequence Chlorophyll/genetics Codon Information Systems Light-Harvesting Protein Complexes Periodicals as Topic Photosynthetic Reaction Center Complex Proteins Plant Proteins/genetics RNA, Messenger Ribulosephosphates/genetics Soybeans/genetics Species Specificity Zea mays/genetics
Chemicals
Codon Light-Harvesting Protein Complexes Photosynthetic Reaction Center Complex Proteins Plant Proteins RNA, Messenger Ribulosephosphates Chlorophyll ribulose-1,5 diphosphate
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Murray E E
Agrigenetics Advanced Sciences Company, Madison, WI 53713.
Lotzer J
Eberle M
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
DOI
10.1093/nar/17.2.477
Published
1989-01-25
Pages
477-98
Language
English
Region
England
NLM ID
0411011
PMCID
PMC331598
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/17.2.477 PMC Full Text View journal details
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