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PMID: 28475856 Published · ppublish English Journal Article

International Cooperation to Enable the Diagnosis of All Rare Genetic Diseases.

American journal of human genetics ·Vol. 100 ·No. 5 ·2017-05-04 ·Pages 695-705

Boycott KM, Rath A, Chong JX, Hartley T, Alkuraya FS, Baynam G, Brookes AJ, Brudno M, Carracedo A, den Dunnen JT, Dyke SOM, Estivill X, Goldblatt J, Gonthier C, Groft SC, Gut I, Hamosh A, Hieter P, Höhn S, Hurles ME, Kaufmann P, Knoppers BM, Krischer JP, Macek M, Matthijs G, Olry A, Parker S, Paschall J, Philippakis AA, Rehm HL, Robinson PN, Sham PC, Stefanov R, Taruscio D, Unni D, Vanstone MR, Zhang F, Brunner H, Bamshad MJ, Lochmüller H

Abstract

Provision of a molecularly confirmed diagnosis in a timely manner for children and adults with rare genetic diseases shortens their "diagnostic odyssey," improves disease management, and fosters genetic counseling with respect to recurrence risks while assuring reproductive choices. In a general clinical genetics setting, the current diagnostic rate is approximately 50%, but for those who do not receive a molecular diagnosis after the initial genetics evaluation, that rate is much lower. Diagnostic success for these more challenging affected individuals depends to a large extent on progress in the discovery of genes associated with, and mechanisms underlying, rare diseases. Thus, continued research is required for moving toward a more complete catalog of disease-related genes and variants. The International Rare Diseases Research Consortium (IRDiRC) was established in 2011 to bring together researchers and organizations invested in rare disease research to develop a means of achieving molecular diagnosis for all rare diseases. Here, we review the current and future bottlenecks to gene discovery and suggest strategies for enabling progress in this regard. Each successful discovery will define potential diagnostic, preventive, and therapeutic opportunities for the corresponding rare disease, enabling precision medicine for this patient population.

Keywords
IRDiRC Matchmaker Exchange disease modeling gene discovery genome sequencing ontologies rare diseases solving the unsolved transcriptome sequencing
MeSH Terms
Databases, Factual Exome Genome, Human Humans International Cooperation Rare Diseases/diagnosis,genetics
Authors & Affiliations
40 authors, click to expand affiliations / ORCID
Boycott Kym M
Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada. Electronic address: [email protected].
Rath Ana
Orphanet, Institut National de la Santé et de la Recherche Médicale US14, 75014 Paris, France.
Chong Jessica X
Department of Pediatrics, University of Washington, Seattle, WA 98195, USA.
Hartley Taila
Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Alkuraya Fowzan S
Department of Genetics, King Faisal Research Center, Riyadh 11211, Saudi Arabia; Saudi Human Genome Program, King Abdulaziz City for Science and Technology, Riyadh 11442, Saudi Arabia.
Baynam Gareth
Genetic Services of Western Australia, Perth, WA 6008, Australia.
Brookes Anthony J
Department of Genetics, University of Leicester, Leicester LE1 7RH, UK.
Brudno Michael
Department of Computer Science, University of Toronto, Toronto M5S 1A1, Canada.
Carracedo Angel
Genomic Medicine Group, Galician Foundation of Genomic Medicine and University of Santiago de Compostela, 15782 Santiago de Compostela, Spain.
den Dunnen Johan T
Departments of Human Genetics and Clinical Genetics, Leiden University Medical Center, Albinusdreef 2, 2333 ZA Leiden, the Netherlands.
Dyke Stephanie O M
Centre of Genomics and Policy, Department of Human Genetics, Faculty of Medicine, McGill University, Montreal, QC H3A 1A4, Canada.
Estivill Xavier
Experimental Division, Sidra Medical and Research Center, PO Box 26999, Doha, Qatar; Genetics Unit, Dexeus Woman's Health, 08028 Barcelona, Spain.
Goldblatt Jack
Genetic Services of Western Australia, Perth, WA 6008, Australia.
Gonthier Catherine
Orphanet, Institut National de la Santé et de la Recherche Médicale US14, 75014 Paris, France.
Groft Stephen C
National Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, MD 20892-4874, USA.
Gut Ivo
Centre Nacional d'Anàlisi Genòmica, Center for Genomic Regulation, Barcelona Institute of Science and Technology, Universitat Pompeu Fabra, 08028 Barcelona, Spain.
Hamosh Ada
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21286, USA.
Hieter Philip
Michael Smith Laboratories, Department of Medical Genetics, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
Höhn Sophie
Orphanet, Institut National de la Santé et de la Recherche Médicale US14, 75014 Paris, France.
Hurles Matthew E
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
Kaufmann Petra
Office of Rare Diseases Research, National Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, MD 20892-4874, USA.
Knoppers Bartha M
Centre of Genomics and Policy, Department of Human Genetics, Faculty of Medicine, McGill University, Montreal, QC H3A 1A4, Canada.
Krischer Jeffrey P
University of South Florida Health Informatics Institute, Tampa, FL 33620, USA.
Macek Milan
Department of Biology and Medical Genetics, Second Faculty of Medicine, Charles University and University Hospital Motol, 150 06 Prague 5, Czech Republic.
Matthijs Gert
Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium.
Olry Annie
Orphanet, Institut National de la Santé et de la Recherche Médicale US14, 75014 Paris, France.
Parker Samantha
Lysogene, 92 200 Neuilly-sur-Seine, France.
Paschall Justin
Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
Philippakis Anthony A
Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Rehm Heidi L
Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Robinson Peter N
Institut für Medizinische Genetik und Humangenetik, Charité Universitätsmdizin Berlin, 13353 Berlin, Germany; Jackson Laboratory for Genomic Medicine, Farmington, CT 06032, USA.
Sham Pak-Chung
Centre for Genomic Sciences, University of Hong Kong, Hong Kong, China.
Stefanov Rumen
Department of Social Medicine and Public Health, Faculty of Public Health, Medical University of Plovdiv, Plovdiv 4002, Bulgaria.
Taruscio Domenica
National Centre for Rare Diseases, Istituto Superiore di Sanità, Rome 299-00161, Italy.
Unni Divya
Orphanet, Institut National de la Santé et de la Recherche Médicale US14, 75014 Paris, France.
Vanstone Megan R
Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Zhang Feng
WuXi AppTec, Waigaoqiao Free Trade Zone, Shanghai 200131, China; WuXi NextCODE, Cambridge, MA 02142, USA.
Brunner Han
Department of Human Genetics, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands; Maastricht University Medical Center, Department of Clinical Genetics, 6229 GT Maastricht, the Netherlands.
Bamshad Michael J
Department of Pediatrics, University of Washington, Seattle, WA 98195, USA; Division of Genetic Medicine, Seattle Children's Hospital, Seattle, WA 98105, USA.
Lochmüller Hanns
John Walton Muscular Dystrophy Research Centre, MRC Centre for Neuromuscular Diseases, Institute of Genetic Medicine, Newcastle University, Newcastle upon Tyne NE1 3BZ, UK.
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Article Info
Journal
American journal of human genetics
Abbr.
Am J Hum Genet
ISSN
1537-6605
Published
2017-05-04
Pages
695-705
Language
English
Region
United States
NLM ID
0370475
PMCID
PMC5420351
Subset
IM
Grants
NHGRI NIH HHS · UM1 HG008900 · United States
NHGRI NIH HHS · U54 HG006493 · United States
NHGRI NIH HHS · U54 HG006542 · United States
NHGRI NIH HHS · UM1 HG006493 · United States
Wellcome Trust · United Kingdom
NHGRI NIH HHS · U41 HG006627 · United States
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