-
The RNA-editing enzyme ADAR1 controls innate immune responses to RNA.
Cell Rep. 2014 Nov 20;9(4):1482-94
PMID: 25456137
-
wANNOVAR: annotating genetic variants for personal genomes via the web.
J Med Genet. 2012 Jul;49(7):433-6
PMID: 22717648
-
Differential expression analysis for sequence count data.
Genome Biol. 2010;11(10):R106
PMID: 20979621
-
Mammalian conserved ADAR targets comprise only a small fragment of the human editosome.
Genome Biol. 2014 Jan 07;15(1):R5
PMID: 24393560
-
Transient overexpression of exogenous APOBEC3A causes C-to-U RNA editing of thousands of genes.
RNA Biol. 2017 May 4;14(5):603-610
PMID: 27149507
-
OptiType: precision HLA typing from next-generation sequencing data.
Bioinformatics. 2014 Dec 1;30(23):3310-6
PMID: 25143287
-
Functions and regulation of RNA editing by ADAR deaminases.
Annu Rev Biochem. 2010;79:321-49
PMID: 20192758
-
RNA-seq Analysis Reveals Unique Transcriptome Signatures in Systemic Lupus Erythematosus Patients with Distinct Autoantibody Specificities.
PLoS One. 2016 Nov 11;11(11):e0166312
PMID: 27835693
-
RADAR: a rigorously annotated database of A-to-I RNA editing.
Nucleic Acids Res. 2014 Jan;42(Database issue):D109-13
PMID: 24163250
-
Anifrolumab, an Anti-Interferon-α Receptor Monoclonal Antibody, in Moderate-to-Severe Systemic Lupus Erythematosus.
Arthritis Rheumatol. 2017 Feb;69(2):376-386
PMID: 28130918
-
Severe systemic lupus erythematosus induced by antiviral treatment for hepatitis C.
J Clin Rheumatol. 2008 Jun;14(3):166-8
PMID: 18525437
-
Systemic lupus erythematosus.
N Engl J Med. 2011 Dec 1;365(22):2110-21
PMID: 22129255
-
Identification of widespread ultra-edited human RNAs.
PLoS Genet. 2011 Oct;7(10):e1002317
PMID: 22028664
-
Reduced levels of protein recoding by A-to-I RNA editing in Alzheimer's disease.
RNA. 2016 Feb;22(2):290-302
PMID: 26655226
-
Epitope spreading in immune-mediated diseases: implications for immunotherapy.
Nat Rev Immunol. 2002 Feb;2(2):85-95
PMID: 11910899
-
Systemic Lupus Erythematosus--A Disease with A Dysregulated Type I Interferon System.
Scand J Immunol. 2015 Sep;82(3):199-207
PMID: 26099519
-
Mutations in ADAR1 cause Aicardi-Goutières syndrome associated with a type I interferon signature.
Nat Genet. 2012 Nov;44(11):1243-8
PMID: 23001123
-
The ADAR protein family.
Genome Biol. 2012 Dec 28;13(12):252
PMID: 23273215
-
RNA editing by adenosine deaminases that act on RNA.
Annu Rev Biochem. 2002;71:817-46
PMID: 12045112
-
APOBEC3A cytidine deaminase induces RNA editing in monocytes and macrophages.
Nat Commun. 2015 Apr 21;6:6881
PMID: 25898173
-
The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers.
Cancer Cell. 2015 Oct 12;28(4):515-528
PMID: 26439496
-
Anti-interferon alpha treatment in SLE.
Clin Immunol. 2013 Sep;148(3):303-12
PMID: 23566912
-
Aicardi-Goutières syndrome: a model disease for systemic autoimmunity.
Clin Exp Immunol. 2014 Jan;175(1):17-24
PMID: 23786362
-
Viral proteome size and CD8+ T cell epitope density are correlated: the effect of complexity on selection.
Infect Genet Evol. 2013 Dec;20:71-7
PMID: 23954420
-
The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein.
Mol Biol Cell. 2001 Jul;12(7):1911-24
PMID: 11451992
-
Interferome v2.0: an updated database of annotated interferon-regulated genes.
Nucleic Acids Res. 2013 Jan;41(Database issue):D1040-6
PMID: 23203888
-
Transcript mutations of the alpha regulatory subunit of protein kinase A and up-regulation of the RNA-editing gene transcript in lupus T lymphocytes.
Lancet. 2002 Sep 14;360(9336):842-9
PMID: 12243919
-
Increased noncanonical splicing of autoantigen transcripts provides the structural basis for expression of untolerized epitopes.
J Allergy Clin Immunol. 2004 Dec;114(6):1463-70
PMID: 15577853
-
Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development.
Immunity. 2015 Nov 17;43(5):933-44
PMID: 26588779
-
A genome-wide map of hyper-edited RNA reveals numerous new sites.
Nat Commun. 2014 Aug 27;5:4726
PMID: 25158696
-
Sources of autoantigens in systemic lupus erythematosus.
Curr Opin Rheumatol. 2005 Sep;17(5):513-7
PMID: 16093826
-
Interferon-alpha-inducible proteins are novel autoantigens in murine lupus.
Arthritis Rheum. 2004 Oct;50(10):3239-49
PMID: 15476221
-
Systemic lupus erythematosus: an autoimmune disease of B cell hyperactivity.
Nat Immunol. 2001 Sep;2(9):764-6
PMID: 11526379
-
ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Nucleic Acids Res. 2010 Sep;38(16):e164
PMID: 20601685
-
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.
Nature. 2000 Jul 6;406(6791):78-81
PMID: 10894545
-
Interferon alpha-induced lupus: proof of principle.
J Clin Rheumatol. 2008 Jun;14(3):131-2
PMID: 18525429
-
The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression.
Science. 2015 Oct 23;350(6259):455-9
PMID: 26382853
-
Spreading of T-cell autoimmunity to cryptic determinants of an autoantigen.
Nature. 1992 Jul 9;358(6382):155-7
PMID: 1377368
-
Induction of APOBEC3 family proteins, a defensive maneuver underlying interferon-induced anti-HIV-1 activity.
J Exp Med. 2006 Jan 23;203(1):41-6
PMID: 16418394
-
Functions and regulation of the APOBEC family of proteins.
Semin Cell Dev Biol. 2012 May;23(3):258-68
PMID: 22001110
-
Synthetic polynucleotides and the amino acid code. II.
Proc Natl Acad Sci U S A. 1962 Jan 15;48:63-8
PMID: 13915740
-
Altered editing in RNA editing adenosine deaminase ADAR2 gene transcripts of systemic lupus erythematosus T lymphocytes.
Immunology. 2007 Jul;121(3):359-69
PMID: 17376196
-
Extensive RNA editing and splicing increase immune self-representation diversity in medullary thymic epithelial cells.
Genome Biol. 2016 Oct 24;17(1):219
PMID: 27776542
-
Accurate identification of human Alu and non-Alu RNA editing sites.
Nat Methods. 2012 Jun;9(6):579-81
PMID: 22484847
-
ADAR1, inosine and the immune sensing system: distinguishing self from non-self.
Wiley Interdiscip Rev RNA. 2016 Mar-Apr;7(2):157-72
PMID: 26692549
-
Specificity of ADAR-mediated RNA editing in newly identified targets.
RNA. 2008 Jun;14(6):1110-8
PMID: 18430892
-
Autoantibody explosion in systemic lupus erythematosus: more than 100 different antibodies found in SLE patients.
Semin Arthritis Rheum. 2004 Oct;34(2):501-37
PMID: 15505768
-
Interferon-gamma: an overview of signals, mechanisms and functions.
J Leukoc Biol. 2004 Feb;75(2):163-89
PMID: 14525967
-
A-to-I editing of microRNAs in the mammalian brain increases during development.
Genome Res. 2012 Aug;22(8):1477-87
PMID: 22645261
-
A distant cis acting intronic element induces site-selective RNA editing.
Nucleic Acids Res. 2012 Oct;40(19):9876-86
PMID: 22848101
-
Elevated RNA Editing Activity Is a Major Contributor to Transcriptomic Diversity in Tumors.
Cell Rep. 2015 Oct 13;13(2):267-76
PMID: 26440895
-
A-to-I RNA editing occurs at over a hundred million genomic sites, located in a majority of human genes.
Genome Res. 2014 Mar;24(3):365-76
PMID: 24347612
-
REDItools: high-throughput RNA editing detection made easy.
Bioinformatics. 2013 Jul 15;29(14):1813-4
PMID: 23742983
-
STAR: ultrafast universal RNA-seq aligner.
Bioinformatics. 2013 Jan 1;29(1):15-21
PMID: 23104886
-
Regulation of serotonin-2C receptor G-protein coupling by RNA editing.
Nature. 1997 May 15;387(6630):303-8
PMID: 9153397
-
Two novel mutations and evidence for haploinsufficiency of the ADAR gene in dyschromatosis symmetrica hereditaria.
Br J Dermatol. 2006 Apr;154(4):636-42
PMID: 16536805
-
Cellular responses to interferon-gamma.
Annu Rev Immunol. 1997;15:749-95
PMID: 9143706
-
NetMHCpan-4.0: Improved Peptide-MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data.
J Immunol. 2017 Nov 1;199(9):3360-3368
PMID: 28978689
-
Regulation of alternative splicing by RNA editing.
Nature. 1999 May 6;399(6731):75-80
PMID: 10331393
-
Modular transcriptional repertoire analyses of adults with systemic lupus erythematosus reveal distinct type I and type II interferon signatures.
Arthritis Rheumatol. 2014 Jun;66(6):1583-95
PMID: 24644022
-
RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself.
Science. 2015 Sep 4;349(6252):1115-20
PMID: 26275108
-
Altered editing in cyclic nucleotide phosphodiesterase 8A1 gene transcripts of systemic lupus erythematosus T lymphocytes.
Immunology. 2008 Nov;125(3):408-19
PMID: 18462347
-
Characterization of the 5'-flanking region of the human RNA-specific adenosine deaminase ADAR1 gene and identification of an interferon-inducible ADAR1 promoter.
Gene. 1999 Mar 18;229(1-2):203-13
PMID: 10095120
-
Predicting sites of ADAR editing in double-stranded RNA.
Nat Commun. 2011;2:319
PMID: 21587236
-
Aicardi-Goutières syndrome and the type I interferonopathies.
Nat Rev Immunol. 2015 Jul;15(7):429-40
PMID: 26052098
-
Immune focusing vs diversification and their connection to immune regulation.
Immunol Rev. 1998 Aug;164:5-10
PMID: 9795758
-
Genome-wide analysis of Alu editability.
Nucleic Acids Res. 2014 Jun;42(11):6876-84
PMID: 24829451