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PMID: 2987935 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Three-dimensional structure of ubiquitin at 2.8 A resolution.

Vijay-Kumar S, Bugg CE, Wilkinson KD, Cook WJ

Abstract

The three-dimensional structure of ubiquitin has been determined at 2.8 A resolution. X-ray diffraction data for the native protein and derivatives were collected with an automated diffractometer. Phases were obtained by use of a single isomorphous mercuric acetate derivative. The molecule contains a pronounced hydrophobic core. Prominent secondary structural features include three and one-half turns of alpha-helix, a mixed beta-sheet that contains four strands, and seven reverse turns. The histidine, tyrosine, and two phenylalanine residues are located on the surface of the molecule.

MeSH Terms
Amino Acid Sequence High Mobility Group Proteins Humans Macromolecular Substances Mathematics Models, Molecular Ubiquitins X-Ray Diffraction
Chemicals
High Mobility Group Proteins Macromolecular Substances Ubiquitins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Vijay-Kumar S
Bugg C E
Wilkinson K D
Cook W J
References (27)
27 references, click to expand
  1. Isolation of a polypeptide that has lymphocyte-differentiating properties and is probably represented universally in living cells.
    Proc Natl Acad Sci U S A. 1975 Jan;72(1):11-5 PMID: 1078892
  2. The ubiquitin-mediated proteolytic pathway and mechanisms of energy-dependent intracellular protein degradation.
    J Cell Biochem. 1984;24(1):27-53 PMID: 6327743
  3. The complete amino acid sequence of ubiquitin, an adenylate cyclase stimulating polypeptide probably universal in living cells.
    Biochemistry. 1975 May 20;14(10):2214-8 PMID: 1170880
  4. Amino-terminal sequence identity of ubiquitin and the nonhistone component of nuclear protein A24.
    Biochem Biophys Res Commun. 1977 Jan 24;74(2):650-5 PMID: 836318
  5. Induction of human granulocyte differentiation in vitro by ubiquitin and thymopoietin.
    Blood. 1977 Aug;50(2):275-88 PMID: 194644
  6. Nuclear magnetic resonance studies of the denaturation of ubiquitin.
    Biochim Biophys Acta. 1977 Sep 27;494(1):126-30 PMID: 20153
  7. The chemistry and biology of thymosin. I. Isolation, characterization, and biological activities of thymosin alpha1 and polypeptide beta1 from calf thymus.
    J Biol Chem. 1979 Feb 10;254(3):981-6 PMID: 216684
  8. The chemistry and biology of thymosin. II. Amino acid sequence analysis of thymosin alpha1 and polypeptide beta1.
    J Biol Chem. 1979 Feb 10;254(3):987-95 PMID: 762108
  9. Early stages of human marrow lymphocyte differentiation: induction in vitro by thymopoietin and ubiquitin.
    J Immunol. 1979 Feb;122(2):686-91 PMID: 310847
  10. Free ubiquitin is a non-histone protein of trout testis chromatin.
    Nature. 1978 Nov 9;276(5684):196-8 PMID: 740036
  11. Crystallization and preliminary x-ray investigation of ubiquitin, a non-histone chromosomal protein.
    J Mol Biol. 1979 May 25;130(3):353-5 PMID: 469946
  12. Histone 2A, a heteromorphous family of eight protein species.
    Biochemistry. 1980 Jul 8;19(14):3238-45 PMID: 7407044
  13. Physical-chemical properties of ubiquitin.
    Biochim Biophys Acta. 1980 Aug 21;624(2):378-85 PMID: 6251899
  14. Histone 2B can be modified by the attachment of ubiquitin.
    Nucleic Acids Res. 1980 Oct 24;8(20):4671-80 PMID: 6255427
  15. N-Bromosuccinimide fragments of protein A24 (uH2A): an implication that ubiquitin is the precursor of conjugation in vivo.
    Biochem Biophys Res Commun. 1980 Oct 31;96(4):1724-31 PMID: 6255954
  16. Structural studies on two high-mobility-group proteins from calf thymus, HMG-14 and HMG-20 (ubiquitin), and their interaction with DNA.
    Eur J Biochem. 1980 Dec;112(3):577-80 PMID: 6257511
  17. Stimulation of ATP-dependent proteolysis requires ubiquitin with the COOH-terminal sequence Arg-Gly-Gly.
    J Biol Chem. 1981 Sep 10;256(17):9235-41 PMID: 6267067
  18. Ubiquitin - protein conjugates.
    Mol Cell Biochem. 1981 Nov 13;40(3):173-87 PMID: 6275256
  19. Selective arrangement of ubiquitinated and D1 protein-containing nucleosomes within the Drosophila genome.
    Cell. 1982 Feb;28(2):375-85 PMID: 6277512
  20. Computer-generated schematic diagrams of protein structures.
    Science. 1982 Apr 30;216(4545):539-40 PMID: 7071602
  21. Isolation, characterization, and amino acid sequence of a ubiquitin-like protein from insect eggs.
    J Biol Chem. 1982 Sep 10;257(17):10267-70 PMID: 6286647
  22. Mechanisms of intracellular protein breakdown.
    Annu Rev Biochem. 1982;51:335-64 PMID: 6287917
  23. Immunochemical analysis of the turnover of ubiquitin-protein conjugates in intact cells. Relationship to the breakdown of abnormal proteins.
    J Biol Chem. 1982 Dec 10;257(23):13964-70 PMID: 6292216
  24. Conjugation of ubiquitin to denatured hemoglobin is proportional to the rate of hemoglobin degradation in HeLa cells.
    Proc Natl Acad Sci U S A. 1982 Oct;79(19):5857-61 PMID: 6310549
  25. Thermolability of ubiquitin-activating enzyme from the mammalian cell cycle mutant ts85.
    Cell. 1984 May;37(1):43-55 PMID: 6327059
  26. Ubiquitin dependence of selective protein degradation demonstrated in the mammalian cell cycle mutant ts85.
    Cell. 1984 May;37(1):57-66 PMID: 6327060
  27. Hybrid troponin reconstituted from vertebrate and arthropod subunits.
    Nature. 1975 May 29;255(5507):424-6 PMID: 124018
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1985-06-00
Pages
3582-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC397829
Subset
IM
Grants
NCI NIH HHS · CA-13148 · United States
NIDCR NIH HHS · DE-02670 · United States
NIGMS NIH HHS · GM-27144 · United States
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