Home LiteratureArticle Details
PMID: 2997708 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Nucleotide sequence of the BsuRI restriction-modification system.

Nucleic acids research ·Vol. 13 ·No. 18 ·1985-09-25 ·Pages 6403-21

Kiss A, Posfai G, Keller CC, Venetianer P, Roberts RJ

Abstract

The genes of the 5'-GGCC specific BsuRI restriction-modification system of Bacillus subtilis have been cloned and expressed in E. coli and their nucleotide sequence has been determined. The restriction and modification genes code for polypeptides with calculated molecular weights of 66,314 and 49,642, respectively. Both enzymes are coded by the same DNA strand. The restriction gene is upstream of the methylase gene and the coding regions are separated by 780 bp. Analysis of the RNA transcripts by S1-nuclease mapping indicates that the restriction and modification genes are transcribed from different promoters. Comparison of the amino acid sequences revealed no homology between the BsuRI restriction and modification enzymes. There are, however, regions of homology between the BsuRI methylase and two other GGCC specific modification enzymes, the BspRI and SPR methylases.

MeSH Terms
Bacillus subtilis/enzymology,genetics Base Sequence Cloning, Molecular Codon DNA Restriction Enzymes DNA-Cytosine Methylases Escherichia coli/genetics Genes Genes, Bacterial Methyltransferases/genetics Molecular Weight Plasmids
Chemicals
Codon DNA modification methylase BsuR DNA-Cytosine Methylases Methyltransferases DNA Restriction Enzymes
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Kiss A
Posfai G
Keller C C
Venetianer P
Roberts R J
References (40)
40 references, click to expand
  1. Regulatory sequences involved in the promotion and termination of RNA transcription.
    Annu Rev Genet. 1979;13:319-53 PMID: 94251
  2. Molecular cloning and expression in Escherichia coli of two modification methylase genes of Bacillus subtilis.
    Gene. 1983 Jan-Feb;21(1-2):111-9 PMID: 6301941
  3. Structure of the gene coding for the sequence-specific DNA-methyltransferase of the B. subtilis phage SPR.
    Nucleic Acids Res. 1984 Dec 11;12(23):9039-49 PMID: 6096817
  4. Regulation of a new bacteriophage T4 gene, 69, that spans an origin of DNA replication.
    EMBO J. 1984 Dec 1;3(12):2863-71 PMID: 6098451
  5. Isolation and characterization of two proteins possessing Hpa II methylase activity.
    J Biol Chem. 1980 Jul 10;255(13):6445-9 PMID: 6248522
  6. A complementation analysis of the restriction and modification of DNA in Escherichia coli.
    J Mol Biol. 1969 May 14;41(3):459-72 PMID: 4896022
  7. Restriction and modification in B. subtilis. Nucleotide sequence recognised by restriction endonuclease R. Bsu R from strain R.
    Mol Gen Genet. 1975 Dec 30;143(1):25-33 PMID: 814403
  8. Restriction and modification enzymes and their recognition sequences.
    Nucleic Acids Res. 1985;13 Suppl:r165-200 PMID: 2987885
  9. Purification and properties of the Bsu endonuclease.
    Methods Enzymol. 1980;65(1):112-32 PMID: 6246332
  10. The nucleotide sequence of the HhaII restriction and modification genes from Haemophilus haemolyticus.
    Gene. 1983 Oct;24(2-3):227-36 PMID: 6315538
  11. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  12. Restriction and modification in Bacillus subtilis: nucleotide sequence, functional organization and product of the DNA methyltransferase gene of bacteriophage SPR.
    Gene. 1984 Jul-Aug;29(1-2):51-61 PMID: 6092231
  13. Restriction and modification in Bacillus subtilis: two DNA methyltransferases with BsuRI specificity. II. Catalytic properties, substrate specificity, and mode of action.
    J Biol Chem. 1981 Sep 10;256(17):9346-51 PMID: 6267073
  14. Improved estimation of secondary structure in ribonucleic acids.
    Nat New Biol. 1973 Nov 14;246(150):40-1 PMID: 4519026
  15. Sequence analysis of the DNA encoding the Eco RI endonuclease and methylase.
    J Biol Chem. 1981 Mar 10;256(5):2143-53 PMID: 6257703
  16. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  17. Characterization of the genes coding for the Eco RV restriction and modification system of Escherichia coli.
    Nucleic Acids Res. 1984 Apr 25;12(8):3659-76 PMID: 6328432
  18. Unique features in the ribosome binding site sequence of the gram-positive Staphylococcus aureus beta-lactamase gene.
    J Biol Chem. 1981 Nov 10;256(21):11283-91 PMID: 6793593
  19. INTERSPECIFIC TRANSFORMATION IN BACILLUS.
    J Bacteriol. 1963 Feb;85(2):461-7 PMID: 16561996
  20. The isolation and characterization of the Escherichia coli DNA adenine methylase (dam) gene.
    Nucleic Acids Res. 1983 Feb 11;11(3):837-51 PMID: 6300769
  21. Restriction and modification in Bacillus subtilis. Localization of the methylated nucleotide in the BsuRI recognition sequence.
    Eur J Biochem. 1978 Oct 16;90(3):581-3 PMID: 213280
  22. Nucleotide sequences that signal the initiation of transcription and translation in Bacillus subtilis.
    Mol Gen Genet. 1982;186(3):339-46 PMID: 6181373
  23. An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.
    Nucleic Acids Res. 1982 May 11;10(9):2951-61 PMID: 7099970
  24. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  25. Restriction and modification in Bacillus subtilis: two DNA methyltransferases with BsuRI specificity. I. Purification and physical properties.
    J Biol Chem. 1981 Sep 10;256(17):9340-5 PMID: 6267072
  26. Computer programs for handling nucleic acid sequences.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):379-86 PMID: 6546422
  27. DNA sequences of structural genes for Eco RI DNA restriction and modification enzymes.
    J Biol Chem. 1981 Mar 10;256(5):2131-9 PMID: 6257701
  28. Specific amino acid substitutions in bacterioopsin: Replacement of a restriction fragment in the structural gene by synthetic DNA fragments containing altered codons.
    Proc Natl Acad Sci U S A. 1984 Apr;81(8):2285-9 PMID: 16593452
  29. Restriction and modification in B. subtilis. Biological aspects.
    Mol Gen Genet. 1974;131(3):181-91 PMID: 4215951
  30. Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.
    Nucleic Acids Res. 1982 Jan 11;10(1):247-63 PMID: 6801626
  31. Structure of the Bacillus sphaericus R modification methylase gene.
    J Mol Biol. 1983 Nov 5;170(3):597-610 PMID: 6313947
  32. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  33. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  34. In vivo transcription initiation and termination sites of an alpha-amylase gene from Bacillus amyloliquefaciens cloned in Bacillus subtilis.
    Gene. 1984 Oct;30(1-3):11-6 PMID: 6210229
  35. Restriction and modification in B. subtilis. Purification and general properties of a restriction endonuclease from strain R.
    Mol Gen Genet. 1975 Dec 30;143(1):13-23 PMID: 2856
  36. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  37. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  38. Two RNA polymerase sigma factors from Bacillus subtilis discriminate between overlapping promoters for a developmentally regulated gene.
    Nature. 1983 Apr 28;302(5911):800-4 PMID: 6405278
  39. Developmental and genetic regulation of Bacillus subtilis genes transcribed by sigma 28-RNA polymerase.
    Cell. 1983 Nov;35(1):285-93 PMID: 6313226
  40. The organization and complete nucleotide sequence of the PstI restriction-modification system.
    J Biol Chem. 1984 Jun 25;259(12):8015-26 PMID: 6330092
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1985-09-25
Pages
6403-21
Language
English
Region
England
NLM ID
0411011
PMCID
PMC321967
Subset
IM
Databases
GENBANK
X02988
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]