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PMID: 3045755 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Identification of two factors which bind to the upstream sequences of a number of nuclear genes coding for mitochondrial proteins and to genetic elements important for cell division in yeast.

Nucleic acids research ·Vol. 16 ·No. 15 ·1988-08-11 ·Pages 7287-301

Dorsman JC, van Heeswijk WC, Grivell LA

Abstract

Two abundant factors, GFI and GFII which interact with the 5' flanking regions of nuclear genes coding for proteins of the mitochondrial respiratory chain have been identified. In one case (subunit VIII of QH2: cytochrome c oxidoreductase) the binding sites for both factors overlap completely and their binding is mutually exclusive. For the other 5' regions tested the GFI and GFII binding sites do not coincide. Interestingly, binding sites for GFI and GFII are also present in or at the 3' ends of the coding regions of two genes of the PHO gene family and in DNA elements important for optimal ARS and CEN function respectively. The sites recognized by GFI conform to the consensus RTCRNNNNNNACGNR, while those recognized by GFII contain the element RTCACGTG. We speculate that GFI and GFII may play a role in different cellular processes, dependent on the context of their binding sites and that one of these processes may be the coordination of the expression of genes involved in mitochondrial biogenesis with the progress of the cell cycle.

MeSH Terms
Base Sequence Cytochrome Reductases/genetics DNA Replication DNA-Binding Proteins/physiology Genes, Fungal NADH Dehydrogenase/genetics Regulatory Sequences, Nucleic Acid Saccharomyces cerevisiae/genetics Sequence Homology, Nucleic Acid Structure-Activity Relationship Submitochondrial Particles/enzymology Transcription Factors/physiology
Chemicals
DNA-Binding Proteins Transcription Factors Cytochrome Reductases NADH Dehydrogenase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Dorsman J C
Section for Molecular Biology, Department of Molecular Cell Biology, Amsterdam, The Netherlands.
van Heeswijk W C
Grivell L A
References (33)
33 references, click to expand
  1. Proteinase mutants of Saccharomyces cerevisiae.
    Genetics. 1977 Jan;85(1):23-33 PMID: 320092
  2. Identification of silencer binding proteins from yeast: possible roles in SIR control and DNA replication.
    EMBO J. 1987 Feb;6(2):461-7 PMID: 15981337
  3. Sequence of a yeast DNA fragment containing a chromosomal replicator and the TRP1 gene.
    Gene. 1980 Jul;10(2):157-66 PMID: 6248420
  4. Fusion of Escherichia coli lacZ to the cytochrome c gene of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1981 Apr;78(4):2199-203 PMID: 6264467
  5. A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system.
    Nucleic Acids Res. 1981 Jul 10;9(13):3047-60 PMID: 6269071
  6. Modulator sequences mediate oxygen regulation of CYC1 and a neighboring gene in yeast.
    Proc Natl Acad Sci U S A. 1983 Jan;80(1):151-5 PMID: 6296862
  7. Isolation and characterization of nuclear genes coding for subunits of the yeast ubiquinol-cytochrome c reductase complex.
    Gene. 1982 Dec;20(3):323-37 PMID: 6299897
  8. pEMBL: a new family of single stranded plasmids.
    Nucleic Acids Res. 1983 Mar 25;11(6):1645-55 PMID: 6300771
  9. Distinctly regulated tandem upstream activation sites mediate catabolite repression of the CYC1 gene of S. cerevisiae.
    Cell. 1984 Feb;36(2):503-11 PMID: 6319028
  10. Isolation, characterization and regulation of expression of the nuclear genes for the core II and Rieske iron-sulphur proteins of the yeast ubiquinol-cytochrome c reductase.
    Gene. 1983 Dec;26(2-3):261-72 PMID: 6323264
  11. The DNA sequence of the nuclear gene coding for the 17-kd subunit VI of the yeast ubiquinol-cytochrome c reductase: a protein with an extremely high content of acidic amino acids.
    EMBO J. 1984 May;3(5):1039-43 PMID: 6329732
  12. Structure and function of the yeast URA3 gene: expression in Escherichia coli.
    Gene. 1984 Jul-Aug;29(1-2):113-24 PMID: 6092217
  13. Structural analysis of the two tandemly repeated acid phosphatase genes in yeast.
    Nucleic Acids Res. 1984 Oct 25;12(20):7721-39 PMID: 6093051
  14. Deletion mutations affecting autonomously replicating sequence ARS1 of Saccharomyces cerevisiae.
    Mol Cell Biol. 1984 Nov;4(11):2455-66 PMID: 6392851
  15. Specific protein binding to far upstream activating sequences in polymerase II promoters.
    Proc Natl Acad Sci U S A. 1985 Jan;82(1):43-7 PMID: 3881758
  16. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  17. Role of conserved sequence elements in yeast centromere DNA.
    EMBO J. 1985 Jul;4(7):1867-74 PMID: 2992949
  18. Functional selection and analysis of yeast centromeric DNA.
    Cell. 1985 Oct;42(3):913-21 PMID: 2996783
  19. Identification of proteins involved in the regulation of yeast iso- 1-cytochrome C expression by oxygen.
    EMBO J. 1985 Oct;4(10):2627-33 PMID: 2996882
  20. GCN4 protein, synthesized in vitro, binds HIS3 regulatory sequences: implications for general control of amino acid biosynthetic genes in yeast.
    Cell. 1985 Nov;43(1):177-88 PMID: 3907851
  21. Isolation, physical characterization and expression analysis of the Saccharomyces cerevisiae positive regulatory gene PHO4.
    Nucleic Acids Res. 1986 Apr 11;14(7):3059-73 PMID: 3008105
  22. GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5' TGACTC 3' sequences.
    Proc Natl Acad Sci U S A. 1986 Nov;83(22):8516-20 PMID: 3464968
  23. Transcription terminator-like element within a Saccharomyces cerevisiae promoter region.
    Mol Cell Biol. 1986 Apr;6(4):1095-101 PMID: 3023868
  24. Subunit II of yeast QH2:cytochrome-c oxidoreductase. Nucleotide sequence of the gene and features of the protein.
    Eur J Biochem. 1987 Feb 16;163(1):97-103 PMID: 3028797
  25. Yeast HAP1 activator competes with the factor RC2 for binding to the upstream activation site UAS1 of the CYC1 gene.
    Cell. 1987 Apr 10;49(1):9-18 PMID: 3030567
  26. Isolation of a Saccharomyces cerevisiae centromere DNA-binding protein, its human homolog, and its possible role as a transcription factor.
    Mol Cell Biol. 1987 Jan;7(1):403-9 PMID: 3550420
  27. Nucleotide sequence of the gene encoding the 11-kDa subunit of the ubiquinol-cytochrome-c oxidoreductase in Saccharomyces cerevisiae.
    Eur J Biochem. 1987 Jun 1;165(2):419-25 PMID: 3036507
  28. Isolation and characterization of the nuclear gene encoding the Rieske iron-sulfur protein (RIP1) from Saccharomyces cerevisiae.
    J Biol Chem. 1987 Jun 25;262(18):8901-9 PMID: 3036836
  29. A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation.
    Cell. 1987 Dec 4;51(5):709-19 PMID: 3315230
  30. Yeast HAP2 and HAP3 activators both bind to the CYC1 upstream activation site, UAS2, in an interdependent manner.
    Cell. 1987 Dec 24;51(6):953-61 PMID: 2826015
  31. Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jan;8(1):210-25 PMID: 3275867
  32. Specific interaction between a Saccharomyces cerevisiae protein and a DNA element associated with certain autonomously replicating sequences.
    Proc Natl Acad Sci U S A. 1988 Feb;85(3):743-6 PMID: 3277180
  33. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1035-9 PMID: 375221
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1988-08-11
Pages
7287-301
Language
English
Region
England
NLM ID
0411011
PMCID
PMC338409
Subset
IM
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