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PMID: 3133637 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Isolation and structural analysis of a ribosomal protein gene in D.melanogaster.

Nucleic acids research ·Vol. 16 ·No. 11 ·1988-06-10 ·Pages 4915-26

Rafti F, Gargiulo G, Manzi A, Malva C, Grossi G, Andone S, Graziani F

Abstract

By using the cDNA clone containing the sequence for the L1 ribosomal protein gene of Xenopus laevis as probe (1), we have isolated positive phages from a Drosophila melanogaster genomic library. The Drosophila genomic fragment, which gives the hybridization signal with the Xenopus cDNA, was sequenced: a region of 369 bp is 70% homologous to the sequence of X. laevis L1 cDNA. The gene was localized in situ at position 98AB of the right arm of the third polytene chromosome. By S1 mapping and heteroduplex analysis we have found that the gene is interrupted by three introns. A Drosophila cDNA embryonic library was screened and three cDNA clones were isolated (900, 1400 and 1500 nt long). By Northern analysis the cDNAs identify a 1400nt transcript present at every stage of development. By the features described, the clones we have isolated identify the Drosophila rp gene homologous to the L1 rp gene of Xenopus and could code for the L1 ribosomal protein described in D. melanogaster.

MeSH Terms
Amino Acid Sequence Animals Bacterial Proteins/genetics Base Sequence DNA/genetics DNA, Recombinant Drosophila melanogaster/genetics Genes Molecular Sequence Data Ribosomal Proteins/genetics
Chemicals
Bacterial Proteins DNA, Recombinant Ribosomal Proteins ribosomal protein L1 DNA
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Rafti F
Istituto Internazionale di Genetica e Biofiscia, CNR, Naples, Italy.
Gargiulo G
Manzi A
Malva C
Grossi G
Andone S
Graziani F
References (38)
38 references, click to expand
  1. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  2. Deficiency Analysis of the Tip of Chromosome 3R in DROSOPHILA MELANOGASTER.
    Genetics. 1986 Mar;112(3):539-50 PMID: 17246317
  3. A membrane-filter technique for the detection of complementary DNA.
    Biochem Biophys Res Commun. 1966 Jun 13;23(5):641-6 PMID: 5963888
  4. Lambda replacement vectors carrying polylinker sequences.
    J Mol Biol. 1983 Nov 15;170(4):827-42 PMID: 6315951
  5. Isolation of a cloned DNA segment containing a ribosomal protein gene of Drosophila melanogaster.
    Gene. 1982 Jun;18(3):267-76 PMID: 6127281
  6. In the absence of ribosomal RNA synthesis, the ribosomal proteins of HeLa cells are synthesized normally and degraded rapidly.
    J Mol Biol. 1977 Sep 25;115(3):315-33 PMID: 592369
  7. Co-ordinated synthesis of some ribosomal proteins and ribosomal RNA in embryos of Xenopus laevis.
    J Mol Biol. 1969 Dec 28;46(3):393-411 PMID: 5365957
  8. Group fractionation and determination of the number of ribosomal subunit proteins from Drosophila melanogaster embryos.
    Biochemistry. 1980 Apr 1;19(7):1425-33 PMID: 6770897
  9. The structural organization of ribosomal DNA in Drosophila melanogaster.
    Cell. 1977 Feb;10(2):193-212 PMID: 402222
  10. Sizing and mapping of early adenovirus mRNAs by gel electrophoresis of S1 endonuclease-digested hybrids.
    Cell. 1977 Nov;12(3):721-32 PMID: 922889
  11. Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5201-5 PMID: 6159641
  12. Chromosomal distribution of ribosomal protein genes in the mouse.
    Cell. 1981 May;24(2):307-12 PMID: 7237550
  13. Nucleotide sequence of the L1 ribosomal protein gene of Xenopus laevis: remarkable sequence homology among introns.
    EMBO J. 1985 Dec 16;4(13A):3483-8 PMID: 3841512
  14. A Drosophila Minute gene encodes a ribosomal protein.
    Nature. 1985 Oct 10-16;317(6037):555-8 PMID: 4047173
  15. Expression of ribosomal-protein genes in Xenopus laevis development.
    Cell. 1982 Aug;30(1):163-71 PMID: 6889922
  16. The ribosomal proteins of Drosophila melanogaster. II. Comparison of protein patterns of ribosomes from larvae, pupae and adult flies by two-dimensional polyacrylamide gel electrophoresis.
    Mol Gen Genet. 1972;118(3):215-22 PMID: 4628337
  17. Isolation and mapping of a cloned ribosomal protein gene of Drosophila melanogaster.
    Nature. 1980 Jun 26;285(5767):674-6 PMID: 6771656
  18. RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination.
    Biochemistry. 1977 Oct 18;16(21):4743-51 PMID: 911786
  19. Expression of two Xenopus laevis ribosomal protein genes in injected frog oocytes. A specific splicing block interferes with the L1 RNA maturation.
    J Mol Biol. 1984 Dec 25;180(4):987-1005 PMID: 6084725
  20. Structural analysis of the Drosophila rpA1 gene, a member of the eucaryotic 'A' type ribosomal protein family.
    Nucleic Acids Res. 1987 Feb 11;15(3):987-1003 PMID: 3103101
  21. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  22. Differential replication of ribosomal gene repeats in polytene nuclei of Drosophila.
    Cell. 1979 Jul;17(3):597-605 PMID: 113105
  23. Sequence analysis of a KpnI family member near the 3' end of human beta-globin gene.
    Nucleic Acids Res. 1985 Nov 11;13(21):7813-27 PMID: 2999705
  24. Screening lambdagt recombinant clones by hybridization to single plaques in situ.
    Science. 1977 Apr 8;196(4286):180-2 PMID: 322279
  25. The ribosomal proteins of Drosophila melanogaster. I. Characterization in polyacrylamide gel of proteins from larval, adult, and ammonium chloride-treated ribosomes.
    Mol Gen Genet. 1970;108(4):349-57 PMID: 5495904
  26. The gene family encoding the mouse ribosomal protein L32 contains a uniquely expressed intron-containing gene and an unmutated processed gene.
    Cell. 1984 Jun;37(2):457-68 PMID: 6327068
  27. Xenopus laevis ribosomal protein genes: isolation of recombinant cDNA clones and study of the genomic organization.
    Nucleic Acids Res. 1981 Mar 11;9(5):1069-86 PMID: 6112733
  28. Transcription of the Drosophila white locus and some of its mutants.
    EMBO J. 1984 Mar;3(3):563-8 PMID: 6425054
  29. pEMBL: a new family of single stranded plasmids.
    Nucleic Acids Res. 1983 Mar 25;11(6):1645-55 PMID: 6300771
  30. Isolation and structural analysis of ribosomal protein genes in Xenopus laevis. Homology between sequences present in the gene and in several different messenger RNAs.
    J Mol Biol. 1982 Nov 5;161(3):353-71 PMID: 6296397
  31. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  32. Ribosomal protein production in normal and anucleolate Xenopus embryos: regulation at the posttranscriptional and translational levels.
    Cell. 1985 Aug;42(1):317-23 PMID: 4016954
  33. The ribosomes of Drosophila. I. Subunit and protein composition.
    Mol Gen Genet. 1974;128(1):1-9 PMID: 4822937
  34. Complementarity of conserved sequence elements present in 28S ribosomal RNA and in ribosomal protein genes of Xenopus laevis and Xenopus tropicalis.
    Gene. 1986;49(3):371-6 PMID: 3569921
  35. Ribosomal-protein synthesis is not autogenously regulated at the translational level in Xenopus laevis.
    Dev Biol. 1985 Feb;107(2):281-9 PMID: 3972154
  36. Sequence, structure, and codon preference of the Drosophila ribosomal protein 49 gene.
    Nucleic Acids Res. 1984 Jul 11;12(13):5495-513 PMID: 6087289
  37. Segmental aneuploidy and the genetic gross structure of the Drosophila genome.
    Genetics. 1972 May;71(1):157-84 PMID: 4624779
  38. A comparison of yeast ribosomal protein gene DNA sequences.
    Nucleic Acids Res. 1984 Nov 26;12(22):8295-312 PMID: 6390341
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1988-06-10
Pages
4915-26
Language
English
Region
England
NLM ID
0411011
PMCID
PMC336706
Subset
IM
Databases
GENBANK
X06881
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