Home LiteratureArticle Details
PMID: 3138112 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The use of chromosomal translocations to study human immunoglobulin gene organization: mapping DH segments within 35 kb of the C mu gene and identification of a new DH locus.

The EMBO journal ·Vol. 7 ·No. 7 ·1988-07-00 ·Pages 2003-10

Buluwela L, Albertson DG, Sherrington P, Rabbitts PH, Spurr N, Rabbitts TH

Abstract

We have studied the Burkitt's lymphoma cell line Daudi which carries the translocation t(8;14). The breakpoint of this translocation on the 14q+ chromosome occurs near to a rearranged DH-JH join, and the actual chromosome junction is a few hundred base pairs upstream of the joined DH element. The nucleotide sequence of the rearranged DH segment shows that it does not come from the previously described D cluster. Using this DH sequence as a probe we have identified two separate DH clusters. One of these is the major DH cluster and is located only 20 kb upstream of the JH segments. A pseudo-VH (probably the first VH segment) is also found approximately 98 kb from JH. A second, minor DH locus has been found which seems to be located on the distal side of the VH locus on chromosome 14, since there is little evidence for rearrangement or deletion of this locus in any B cell DNA analysed. A single VHIII subgroup gene is located within 25 kb of the newly identified DH element: it is possible that this minor locus occurs near the limit of the Igh locus.

MeSH Terms
Amino Acid Sequence Base Sequence Cell Line Chromosomes, Human, Pair 14 Chromosomes, Human, Pair 8 Cloning, Molecular Cosmids Genes, Immunoglobulin Humans Immunoglobulin Heavy Chains/genetics Molecular Sequence Data Nucleic Acid Hybridization Translocation, Genetic
Chemicals
Immunoglobulin Heavy Chains
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Buluwela L
Medical Research Council Laboratory of Molecular Biology, MRC Centre, Cambridge, UK.
Albertson D G
Sherrington P
Rabbitts P H
Spurr N
Rabbitts T H
References (40)
40 references, click to expand
  1. Mapping muscle protein genes by in situ hybridization using biotin-labeled probes.
    EMBO J. 1985 Oct;4(10):2493-8 PMID: 4054096
  2. Physical linkage of three CD3 genes on human chromosome 11.
    EMBO J. 1987 Oct;6(10):2953-7 PMID: 2826124
  3. Human immunoglobulin heavy chain genes: evolutionary comparisons of C mu, C delta and C gamma genes and associated switch sequences.
    Nucleic Acids Res. 1981 Sep 25;9(18):4509-24 PMID: 6795593
  4. The t(8;14) chromosome translocation of the Burkitt lymphoma cell line Daudi occurred during immunoglobulin gene rearrangement and involved the heavy chain diversity region.
    Proc Natl Acad Sci U S A. 1987 Oct;84(19):6835-9 PMID: 3116544
  5. Toward a physical map of the genome of the nematode Caenorhabditis elegans.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7821-5 PMID: 16593771
  6. Novel immunoglobulin heavy chains are produced from DJH gene segment rearrangements in lymphoid cells.
    Nature. 1984 Nov 29-Dec 5;312(5993):418-23 PMID: 6095102
  7. The t(8; 14) chromosomal translocation occurring in B-cell malignancies results from mistakes in V-D-J joining.
    Nature. 1986 Nov 13-19;324(6093):158-61 PMID: 3097550
  8. Homogeneously staining chromosomal regions contain amplified copies of an abundantly expressed cellular oncogene (c-myc) in malignant neuroendocrine cells from a human colon carcinoma.
    Proc Natl Acad Sci U S A. 1983 Mar;80(6):1707-11 PMID: 6300869
  9. Chromosomal localization of human cellular homologues of two viral oncogenes.
    Nature. 1982 Oct 21;299(5885):747-9 PMID: 7121606
  10. Diversity and rearrangement of the human T cell rearranging gamma genes: nine germ-line variable genes belonging to two subgroups.
    Cell. 1986 Apr 25;45(2):237-46 PMID: 2938743
  11. The current status and portability of our sequence handling software.
    Nucleic Acids Res. 1986 Jan 10;14(1):217-31 PMID: 3511446
  12. A new selective phage cloning vector, lambda 2001, with sites for XbaI, BamHI, HindIII, EcoRI, SstI and XhoI.
    Gene. 1984 Dec;32(1-2):217-24 PMID: 6099311
  13. Organization and evolution of variable region genes of the human immunoglobulin heavy chain.
    J Mol Biol. 1986 Aug 20;190(4):529-41 PMID: 3097326
  14. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  15. The mechanism of chromosome 14 inversion in a human T cell lymphoma.
    Cell. 1987 Jul 3;50(1):97-105 PMID: 3036367
  16. Fusion of an immunoglobulin variable gene and a T cell receptor constant gene in the chromosome 14 inversion associated with T cell tumors.
    Cell. 1985 Dec;43(3 Pt 2):705-13 PMID: 3935328
  17. Human immunoglobulin D segments encoded in tandem multigenic families.
    Nature. 1981 Dec 17;294(5842):631-5 PMID: 7312051
  18. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  19. Regulation of expression of liver-specific enzymes. III. Further analysis of a series of rat hepatoma X human somatic cell hybrids.
    Ann Hum Genet. 1982 Oct;46(Pt 4):307-27 PMID: 6297371
  20. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  21. A cytochrome P-450 gene family mapped to human chromosome 19.
    Ann Hum Genet. 1985 Oct;49(Pt 4):267-74 PMID: 3000277
  22. The human immunoglobulin genes. The nineteenth Colworth medal lecture.
    Biochem Soc Trans. 1983 Apr;11(2):119-26 PMID: 6420211
  23. Diversity and joining segments of mouse immunoglobulin heavy chain genes are closely linked and in the same orientation: implications for the joining mechanism.
    Proc Natl Acad Sci U S A. 1983 May;80(10):3030-4 PMID: 6407007
  24. Effect of somatic mutation within translocated c-myc genes in Burkitt's lymphoma.
    Nature. 1984 Jun 14-20;309(5969):592-7 PMID: 6547209
  25. Lorist6, a cosmid vector with BamHI, NotI, ScaI and HindIII cloning sites and altered neomycin phosphotransferase gene expression.
    Gene. 1987;53(2-3):283-6 PMID: 3038694
  26. Structure and multiplicity of genes for the human immunoglobulin heavy chain variable region.
    Proc Natl Acad Sci U S A. 1980 Nov;77(11):6561-5 PMID: 6450418
  27. Localization of the ribosomal genes in Caenorhabditis elegans chromosomes by in situ hybridization using biotin-labeled probes.
    EMBO J. 1984 Jun;3(6):1227-34 PMID: 6378619
  28. Translocation joins c-myc and immunoglobulin gamma 1 genes in a Burkitt lymphoma revealing a third exon in the c-myc oncogene.
    Nature. 1983 Jul 14-20;304(5922):135-9 PMID: 6306472
  29. Complex rearrangements within the human J delta-C delta/J alpha-C alpha locus and aberrant recombination between J alpha segments.
    EMBO J. 1988 Jun;7(6):1661-8 PMID: 2971534
  30. Human myosin heavy chain genes assigned to chromosome 17 using a human cDNA clone as probe.
    Ann Hum Genet. 1985 May;49(Pt 2):101-9 PMID: 3000272
  31. Assignment of the structural gene for the third component of human complement to chromosome 19.
    Proc Natl Acad Sci U S A. 1982 Aug;79(16):5021-5 PMID: 6956911
  32. Genetic analysis with human--mouse somatic cell hybrids.
    Nature. 1969 Jul 26;223(5204):358-63 PMID: 4309885
  33. Structure of the human immunoglobulin mu locus: characterization of embryonic and rearranged J and D genes.
    Cell. 1981 Dec;27(3 Pt 2):583-91 PMID: 6101209
  34. Mechanism of the t(14;18) chromosomal translocation: structural analysis of both derivative 14 and 18 reciprocal partners.
    Proc Natl Acad Sci U S A. 1987 Apr;84(8):2396-400 PMID: 3104914
  35. Clustering of extensive somatic mutations in the variable region of an immunoglobulin heavy chain gene from a human B cell lymphoma.
    Cell. 1986 Jan 17;44(1):97-106 PMID: 3079673
  36. Comparison of the hinge-coding segments in human immunoglobulin gamma heavy chain genes and the linkage of the gamma 2 and gamma 4 subclass genes.
    EMBO J. 1982;1(4):403-7 PMID: 6329676
  37. The sequence of a human immunoglobulin epsilon heavy chain constant region gene, and evidence for three non-allelic genes.
    EMBO J. 1982;1(5):655-60 PMID: 6234164
  38. Human gene mapping using an X/autosome translocation.
    Somatic Cell Genet. 1976 Mar;2(2):125-40 PMID: 69325
  39. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  40. Immunochemical analysis of the N-acetyl hexosaminidases in human-mouse hybrids made using a double selective system.
    Cytogenet Cell Genet. 1977;18(3):136-48 PMID: 405179
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1988-07-00
Pages
2003-10
Language
English
Region
England
NLM ID
8208664
PMCID
PMC454475
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]