Abstract
ACTB encodes β-cytoplasmic actin, an essential component of the cytoskeleton. Based on chromosome 7p22.1 deletions that include the ACTB locus and on rare truncating ACTB variants, a phenotype resulting from ACTB haploinsufficiency was recently proposed. We report putative ACTB loss-of-function variants in four patients. To the best of our knowledge, we report the first 7p22.1 microdeletion confined to ACTB and the second ACTB frameshifting mutation that predicts mRNA decay. A de-novo ACTB p.(Gly302Ala) mutation affects β-cytoplasmic actin distribution. All four patients share a facial gestalt that is distinct from that of individuals with dominant-negative ACTB variants in Baraitser-Winter cerebrofrontofacial syndrome. Two of our patients had strikingly thin and sparse scalp hair. One patient had sagittal craniosynostosis and hypospadias. All three affected male children have attention deficits and mild global developmental delay. Mild intellectual disability was present in only one patient. Heterozygous ACTB deletion can allow for normal psychomotor function.
Keywords
ACTB
intellectual disability
loss-of-function
sparse scalp hair
β-cytoplasmic actin
MeSH Terms
Actins/chemistry,genetics
Adult
Child
Child, Preschool
Facies
Female
Genetic Association Studies/methods
Genetic Loci
Genetic Predisposition to Disease
Humans
Loss of Function Mutation
Magnetic Resonance Imaging
Male
Models, Molecular
Phenotype
Protein Conformation
Structure-Activity Relationship
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Baumann Matthias
Department of Pediatrics I, Medical University of Innsbruck, Innsbruck, Austria.
Beaver Erin M
Mercy Kids Genetics, Mercy Children's Hospital St. Louis, St. Louis, Missouri.
Palomares-Bralo María
Institute of Medical and Molecular Genetics, University Hospital La Paz, Madrid, Spain.
Santos-Simarro Fernando
Institute of Medical and Molecular Genetics, University Hospital La Paz, Madrid, Spain.
Holzer Peter
Intelligent Predictive Networks GmbH, Vienna, Austria.
Povysil Gundula
Institute of Bioinformatics, Johannes Kepler University, Linz, Austria.
Müller Thomas
Department of Pediatrics I, Medical University of Innsbruck, Innsbruck, Austria.
Valovka Taras
Department of Pediatrics I, Medical University of Innsbruck, Innsbruck, Austria.
Janecke Andreas R
ORCID
Department of Pediatrics I, Medical University of Innsbruck, Innsbruck, Austria. | Division of Human Genetics, Medical University of Innsbruck, Innsbruck, Austria.
References (20)
20 references, click to expand
-
Refinement of the critical 7p22.1 deletion region: Haploinsufficiency of ACTB is the cause of the 7p22.1 microdeletion-related developmental disorders.
Eur J Med Genet. 2018 May;61(5):248-252
PMID: 29274487
-
Further delineation of putative ACTB loss-of-function variants: A 4-patient series.
Hum Mutat. 2020 Apr;41(4):753-758
PMID: 31898838
-
7p22.1 microdeletions involving ACTB associated with developmental delay, short stature, and microcephaly.
Eur J Med Genet. 2016 Oct;59(10):502-6
PMID: 27633570
-
Severe forms of Baraitser-Winter syndrome are caused by ACTB mutations rather than ACTG1 mutations.
Eur J Hum Genet. 2014 Feb;22(2):179-83
PMID: 23756437
-
Structural basis of actin monomer re-charging by cyclase-associated protein.
Nat Commun. 2018 May 14;9(1):1892
PMID: 29760438
-
Dystonia-deafness syndrome caused by ACTB p.Arg183Trp heterozygosity shows striatal dopaminergic dysfunction and response to pallidal stimulation.
J Neurodev Disord. 2018 May 22;10(1):17
PMID: 29788902
-
Predicting the functional effect of amino acid substitutions and indels.
PLoS One. 2012;7(10):e46688
PMID: 23056405
-
CADD: predicting the deleteriousness of variants throughout the human genome.
Nucleic Acids Res. 2019 Jan 8;47(D1):D886-D894
PMID: 30371827
-
A method and server for predicting damaging missense mutations.
Nat Methods. 2010 Apr;7(4):248-9
PMID: 20354512
-
Baraitser-Winter cerebrofrontofacial syndrome: delineation of the spectrum in 42 cases.
Eur J Hum Genet. 2015 Mar;23(3):292-301
PMID: 25052316
-
Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.
Nat Rev Mol Cell Biol. 2015 Nov;16(11):665-77
PMID: 26397022
-
ACTB Loss-of-Function Mutations Result in a Pleiotropic Developmental Disorder.
Am J Hum Genet. 2017 Dec 7;101(6):1021-1033
PMID: 29220674
-
A mutation of beta -actin that alters depolymerization dynamics is associated with autosomal dominant developmental malformations, deafness, and dystonia.
Am J Hum Genet. 2006 Jun;78(6):947-60
PMID: 16685646
-
MutationTaster evaluates disease-causing potential of sequence alterations.
Nat Methods. 2010 Aug;7(8):575-6
PMID: 20676075
-
GeneMatcher: a matching tool for connecting investigators with an interest in the same gene.
Hum Mutat. 2015 Oct;36(10):928-30
PMID: 26220891
-
panelcn.MOPS: Copy-number detection in targeted NGS panel data for clinical diagnostics.
Hum Mutat. 2017 Jul;38(7):889-897
PMID: 28449315
-
Variants in exons 5 and 6 of ACTB cause syndromic thrombocytopenia.
Nat Commun. 2018 Oct 12;9(1):4250
PMID: 30315159
-
A heterozygous mutation of beta-actin associated with neutrophil dysfunction and recurrent infection.
Proc Natl Acad Sci U S A. 1999 Jul 20;96(15):8693-8
PMID: 10411937
-
A recognizable type of syndromic short stature with arthrogryposis caused by bi-allelic SEMA3A loss-of-function variants.
Clin Genet. 2017 Jul;92(1):86-90
PMID: 28075028
-
De novo mutations in the actin genes ACTB and ACTG1 cause Baraitser-Winter syndrome.
Nat Genet. 2012 Feb 26;44(4):440-4, S1-2
PMID: 22366783
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