Home LiteratureArticle Details
PMID: 3611030 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

oriT sequence of the antibiotic resistance plasmid R100.

Journal of bacteriology ·Vol. 169 ·No. 8 ·1987-08-00 ·Pages 3829-32

McIntire SA, Dempsey WB

Abstract

We present the nucleotide sequence of the oriT region from plasmid R100. Comparison to other IncF plasmids revealed homology around the proposed nick sites as well as conservation of inverted repeated sequences in the nonhomologous region. Three areas showed strong homology (eight of nine nucleotides) to the consensus sequence for binding of integration host factor, suggesting a role for this DNA-binding protein in nicking at oriT.

MeSH Terms
Anti-Bacterial Agents/pharmacology Conjugation, Genetic DNA, Bacterial/genetics,metabolism DNA-Binding Proteins/metabolism F Factor R Factors Repetitive Sequences, Nucleic Acid Sequence Homology, Nucleic Acid
Chemicals
Anti-Bacterial Agents DNA, Bacterial DNA-Binding Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
McIntire S A
Dempsey W B
References (40)
40 references, click to expand
  1. Strand selection during bacterial mating.
    Cold Spring Harb Symp Quant Biol. 1968;33:647-50 PMID: 4892001
  2. Fertility inhibition gene of plasmid R100.
    Nucleic Acids Res. 1987 Mar 11;15(5):2029-42 PMID: 2951652
  3. Transfer-defective mutants of sex factors in Escherichia coli. I. Defective mutants and complementation analysis.
    Genetics. 1970 Feb;64(2):173-88 PMID: 4919134
  4. Electron microscope heteroduplex studies of sequence relations among plasmids of Escherichia coli. II. Structure of drug resistance (R) factors and F factors.
    J Mol Biol. 1973 Apr 5;75(2):235-55 PMID: 4580676
  5. Genetic analysis of deletions of R100-1 that are both transfer-deficient and tetracycline-sensitive.
    J Gen Microbiol. 1976 Mar;93(1):133-40 PMID: 772162
  6. A new method for sequencing DNA.
    Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4 PMID: 265521
  7. Insertion of bacteriophage lambda into the deo operon of Escherichia coli K-12 and isolation of plaque-forming lambdadeo+ transducing bacteriophages.
    J Bacteriol. 1978 Nov;136(2):668-81 PMID: 361716
  8. Chromosomal regulation of sexual expression in Escherichia coli.
    J Bacteriol. 1979 Feb;137(2):1063-5 PMID: 370096
  9. Two Escherichia coli chromosomal cistrons, sfrA and sfrB, which are needed for expression of F factor tra functions.
    J Bacteriol. 1979 Sep;139(3):730-7 PMID: 383690
  10. Integrative recombination of bacteriophage lambda: requirement for supertwisted DNA in vivo and characterization of int.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 2:1099-109 PMID: 226309
  11. Chromosomal mutations of Escherichia coli that alter expression of conjugative plasmid functions.
    Proc Natl Acad Sci U S A. 1980 Jan;77(1):513-7 PMID: 6102380
  12. Characterisation of an in vivo system for nicking at the origin of conjugal DNA transfer of the sex factor F.
    J Mol Biol. 1980 Jan 15;136(2):129-50 PMID: 6154798
  13. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  14. An E. coli gene product required for lambda site-specific recombination.
    Cell. 1980 Jul;20(3):711-9 PMID: 6251971
  15. sfrA and sfrB products of Escherichia coli K-12 are transcriptional control factors.
    J Bacteriol. 1981 Feb;145(2):840-4 PMID: 7007352
  16. The conjugation system of F-like plasmids.
    Annu Rev Genet. 1980;14:41-76 PMID: 6111288
  17. Direct role of the himA gene product in phage lambda integration.
    Nature. 1981 Apr 9;290(5806):523-6 PMID: 6261146
  18. Purification and properties of the Escherichia coli protein factor required for lambda integrative recombination.
    J Biol Chem. 1981 Sep 10;256(17):9246-53 PMID: 6267068
  19. DNA homology of the promoter-distal regions of the tra operons of sex factors F and R100 in Escherichia coli K-12.
    J Bacteriol. 1982 Apr;150(1):389-94 PMID: 6277869
  20. Mutations in genes cpxA and cpxB alter the protein composition of Escherichia coli inner and outer membranes.
    J Bacteriol. 1982 Sep;151(3):1553-9 PMID: 7050092
  21. Control of phage lambda development by stability and synthesis of cII protein: role of the viral cIII and host hflA, himA and himD genes.
    Cell. 1982 Dec;31(3 Pt 2):565-73 PMID: 6218885
  22. Regulation of the F conjugation genes studied by hybridization and tra-lacZ fusion.
    J Mol Biol. 1983 Jul 25;168(1):103-22 PMID: 6192244
  23. Synergistic effect of himA and gyrB mutations: evidence that him functions control expression of ilv and xyl genes.
    J Bacteriol. 1984 Feb;157(2):484-9 PMID: 6229530
  24. Reduced expression of the isoleucine and valine enzymes in integration host factor mutants of Escherichia coli.
    J Mol Biol. 1984 Feb 5;172(4):573-9 PMID: 6363719
  25. A comprehensive sequence analysis program for the IBM personal computer.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 2):581-99 PMID: 6546431
  26. Processing of plasmid DNA during bacterial conjugation.
    Microbiol Rev. 1984 Mar;48(1):24-41 PMID: 6201705
  27. Cloning, mutation, and location of the F origin of conjugal transfer.
    EMBO J. 1982;1(6):747-53 PMID: 6329701
  28. The F plasmid origin of transfer: DNA sequence of wild-type and mutant origins and location of origin-specific nicks.
    EMBO J. 1984 May;3(5):1175-80 PMID: 6329741
  29. Cloning the origin of transfer region of the resistance plasmid R1.
    EMBO J. 1984 Aug;3(8):1731-5 PMID: 6383819
  30. E. coli integration host factor binds to specific sites in DNA.
    Cell. 1984 Dec;39(3 Pt 2):707-16 PMID: 6096022
  31. Regulation of Mu transposition. I. Localization of the presumed recognition sites for HimD and Ner functions controlling bacteriophage Mu transcription.
    Gene. 1984 Oct;30(1-3):41-6 PMID: 6096223
  32. Interactions of bacteriophage and host macromolecules in the growth of bacteriophage lambda.
    Microbiol Rev. 1984 Dec;48(4):299-325 PMID: 6240590
  33. The phi 80 and P22 attachment sites. Primary structure and interaction with Escherichia coli integration host factor.
    J Biol Chem. 1985 Apr 10;260(7):4468-77 PMID: 2984205
  34. Formation of delta tra F' plasmids: specific recombination at oriT.
    J Mol Biol. 1985 Nov 20;186(2):267-74 PMID: 3910839
  35. Specificities of IncF plasmid conjugation genes.
    Genet Res. 1986 Feb;47(1):1-11 PMID: 3514378
  36. Cloning, mapping, and sequencing of plasmid R100 traM and finP genes.
    J Bacteriol. 1986 Jul;167(1):336-45 PMID: 3522549
  37. Replication of pSC101: effects of mutations in the E. coli DNA binding protein IHF.
    Mol Gen Genet. 1986 Jul;204(1):85-9 PMID: 3528758
  38. Origin of transfer of IncF plasmids and nucleotide sequences of the type II oriT, traM, and traY alleles from ColB4-K98 and the type IV traY allele from R100-1.
    J Bacteriol. 1986 Oct;168(1):132-9 PMID: 3531163
  39. The conjugation system of F, the fertility factor of Escherichia coli.
    Annu Rev Genet. 1986;20:593-624 PMID: 2880557
  40. Asymmetric transfer of DNA strands in bacterial conjugation.
    Cold Spring Harb Symp Quant Biol. 1968;33:651-8 PMID: 4892002
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1987-08-00
Pages
3829-32
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC212476
Subset
IM
Grants
NIAID NIH HHS · AI-17402 · United States
Databases
GENBANK
M17148
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]