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PMID: 4068144 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

A new pathway in the generation of defective retrovirus DNA.

Journal of virology ·Vol. 56 ·No. 3 ·1985-12-00 ·Pages 779-89

Olsen JC, Swanstrom R

Abstract

We used a retrovirus shuttle vector to make molecular clones of circular viral DNA from infected cells. One-third of the molecules examined had deletions that started within or near the U5 domain of the long terminal repeat (LTR) region and extended a variable distance toward the gag gene. We present evidence that some of these deletions arose by cleavage of a single LTR unit, in contrast to the cleavage of tandem LTR units associated with the integration reaction. These results suggest that in the formation of defective circular DNA, the U5 domain can be recognized and cleaved in the absence of an adjacent U3 domain. The cleavage of isolated U5 domains may represent an important mechanism responsible for the generation of certain forms of both defective circular DNA and defective integrated DNA.

MeSH Terms
Animals Chick Embryo Chromosome Deletion Chromosome Mapping DNA, Circular/genetics DNA, Viral/genetics Defective Viruses/genetics Genetic Linkage Genetic Vectors Recombination, Genetic Repetitive Sequences, Nucleic Acid Retroviridae/genetics Viral Envelope Proteins/genetics
Chemicals
DNA, Circular DNA, Viral Viral Envelope Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Olsen J C
Swanstrom R
References (61)
61 references, click to expand
  1. Avian oncovirus mutant (SE21Q1b) deficient in genomic RNA: characterization of a deletion in the provirus.
    J Virol. 1980 Nov;36(2):450-6 PMID: 6253670
  2. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  3. Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose.
    Proc Natl Acad Sci U S A. 1980 Sep;77(9):5201-5 PMID: 6159641
  4. Molecular cloning and characterization of avian sarcoma virus circular DNA molecules.
    J Virol. 1980 Oct;36(1):50-61 PMID: 6255214
  5. Nucleotide sequence analysis of the long terminal repeat (LTR) of avian retroviruses: structural similarities with transposable elements.
    Cell. 1980 Nov;22(2 Pt 2):379-86 PMID: 6256079
  6. Nucleotide sequences at host-proviral junctions for mouse mammary tumour virus.
    Nature. 1981 Jan 22;289(5795):253-8 PMID: 6256658
  7. Analysis of avian leukosis virus DNA and RNA in bursal tumours: viral gene expression is not required for maintenance of the tumor state.
    Cell. 1981 Feb;23(2):311-22 PMID: 6258797
  8. Virus-coded DNA endonuclease from avian retrovirus.
    J Virol. 1981 May;38(2):548-55 PMID: 6165835
  9. Nucleotide sequence of cloned unintegrated avian sarcoma virus DNA: viral DNA contains direct and inverted repeats similar to those in transposable elements.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):124-8 PMID: 6264426
  10. Molecular cloning of B- and N-tropic endogenous BALB/c murine leukemia virus circular DNA intermediates: isolation and characterization of infectious recombinant clones.
    J Virol. 1981 Jul;39(1):162-71 PMID: 6268806
  11. Intramolecular integration within Moloney murine leukemia virus DNA.
    J Virol. 1981 Oct;40(1):164-72 PMID: 6457158
  12. Nucleotide sequence of the 5' noncoding region and part of the gag gene of Rous sarcoma virus.
    J Virol. 1982 Feb;41(2):535-41 PMID: 6281465
  13. Long terminal repeat of murine retroviral DNAs: sequence analysis, host-proviral junctions, and preintegration site.
    J Virol. 1982 Feb;41(2):542-56 PMID: 6281466
  14. Form and function of retroviral proviruses.
    Science. 1982 May 21;216(4548):812-20 PMID: 6177038
  15. Restriction endonuclease and nucleotide sequence analyses of molecularly cloned unintegrated avian tumor virus DNA: structure of large terminal repeats in circle junctions.
    J Virol. 1982 Apr;42(1):346-51 PMID: 6283156
  16. Avian retrovirus pp32 DNA-binding protein. I. Recognition of specific sequences on retrovirus DNA terminal repeats.
    J Virol. 1982 Oct;44(1):330-43 PMID: 6292495
  17. Long terminal repeat (LTR)-derived recombination of retroviral DNA: sequence analyses of an aberrant clone of baboon endogenous virus DNA which carries an inversion from the LTR to the gag region.
    Nucleic Acids Res. 1982 Sep 11;10(17):5333-43 PMID: 6292838
  18. Nucleotide sequence of Rous sarcoma virus.
    Cell. 1983 Mar;32(3):853-69 PMID: 6299578
  19. High-efficiency ligation and recombination of DNA fragments by vertebrate cells.
    Science. 1983 May 6;220(4597):606-9 PMID: 6301012
  20. Transduction of a cellular oncogene: the genesis of Rous sarcoma virus.
    Proc Natl Acad Sci U S A. 1983 May;80(9):2519-23 PMID: 6302692
  21. Studies on transformation of Escherichia coli with plasmids.
    J Mol Biol. 1983 Jun 5;166(4):557-80 PMID: 6345791
  22. Identification of a sequence likely to be required for avian retroviral packaging.
    Virology. 1983 Jul 30;128(2):505-11 PMID: 6310871
  23. Site-specific mutagenesis of avian erythroblastosis virus: erb-B is required for oncogenicity.
    Virology. 1983 Oct 15;130(1):155-78 PMID: 6195816
  24. The terminal nucleotides of retrovirus DNA are required for integration but not virus production.
    Nature. 1983 Nov 10-16;306(5939):155-60 PMID: 6316141
  25. Selective cleavage in the avian retroviral long terminal repeat sequence by the endonuclease associated with the alpha beta form of avian reverse transcriptase.
    Proc Natl Acad Sci U S A. 1983 Nov;80(22):6745-9 PMID: 6196775
  26. Circles with two tandem LTRs are precursors to integrated retrovirus DNA.
    Cell. 1984 Mar;36(3):673-9 PMID: 6697392
  27. Differences in intracellular DNA ligation after microinjection and transfection.
    Mol Cell Biol. 1984 Feb;4(2):240-6 PMID: 6321956
  28. Proviral deletions and oncogene base-substitutions in insertionally mutagenized c-myc alleles may contribute to the progression of avian bursal tumors.
    Proc Natl Acad Sci U S A. 1984 Feb;81(3):843-7 PMID: 6322173
  29. Characterization of a Rous sarcoma virus mutant defective in packaging its own genomic RNA: biochemical properties of mutant TK15 and mutant-induced transformants.
    J Virol. 1984 Jul;51(1):154-62 PMID: 6202881
  30. Construction and analysis of deletion mutations in the pol gene of Moloney murine leukemia virus: a new viral function required for productive infection.
    Cell. 1984 Jul;37(3):1043-52 PMID: 6204767
  31. Construction and applications of a highly transmissible murine retrovirus shuttle vector.
    Cell. 1984 Jul;37(3):1053-62 PMID: 6331674
  32. A mutant murine leukemia virus with a single missense codon in pol is defective in a function affecting integration.
    Proc Natl Acad Sci U S A. 1984 Oct;81(20):6461-5 PMID: 6208550
  33. The retrovirus pol gene encodes a product required for DNA integration: identification of a retrovirus int locus.
    Proc Natl Acad Sci U S A. 1984 Dec;81(24):7885-9 PMID: 6083562
  34. Characterization of a retrovirus shuttle vector capable of either proviral integration or extrachromosomal replication in mouse cells.
    Mol Cell Biol. 1985 Feb;5(2):305-12 PMID: 2983188
  35. Reverse transcription of 7S L RNA by an avian retrovirus.
    J Virol. 1985 May;54(2):278-84 PMID: 2985796
  36. Circles with two tandem long terminal repeats are specifically cleaved by pol gene-associated endonuclease from avian sarcoma and leukosis viruses: nucleotide sequences required for site-specific cleavage.
    J Virol. 1985 Nov;56(2):589-99 PMID: 2414465
  37. Selective extraction of polyoma DNA from infected mouse cell cultures.
    J Mol Biol. 1967 Jun 14;26(2):365-9 PMID: 4291934
  38. Spontaneous segregation of nontransforming viruses from cloned sarcoma viruses.
    Virology. 1971 Dec;46(3):939-46 PMID: 4332982
  39. Genetically stable reassortment of markers during mixed infection with avian tumor viruses.
    Virology. 1971 Dec;46(3):947-52 PMID: 4332983
  40. Genetic recombination with avian tumor virus.
    Virology. 1972 Jul;49(1):37-44 PMID: 4338996
  41. A new technique for the assay of infectivity of human adenovirus 5 DNA.
    Virology. 1973 Apr;52(2):456-67 PMID: 4705382
  42. Covalently closed circular DNA of avian sarcoma virus: purification from nuclei of infected quail tumor cells and measurement by electron microscopy and gel electrophoresis.
    J Mol Biol. 1976 Sep 15;106(2):337-57 PMID: 185393
  43. An analysis of the role of tRNA species as primers for the transcription into DNA of RNA tumor virus genomes.
    Biochim Biophys Acta. 1977 Mar 21;473(1):57-71 PMID: 66067
  44. Characterization of DNA complementary to nucleotide sequences adjacent to poly(A) at the 3'-terminus of the avian sarcoma virus genome.
    Virology. 1977 Jun 1;79(1):183-97 PMID: 194400
  45. Continuous tissue culture cell lines derived from chemically induced tumors of Japanese quail.
    Cell. 1977 May;11(1):95-103 PMID: 194709
  46. A very sensitive biochemical assay for detecting and quantitating avian oncornaviruses.
    Virology. 1977 Jul 1;80(1):166-76 PMID: 69360
  47. Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
    J Mol Biol. 1977 Jun 15;113(1):237-51 PMID: 881736
  48. Virus-specific DNA in the cytoplasm of avian sarcoma virus-infected cells is a precursor to covalently closed circular viral DNA in the nucleus.
    J Virol. 1978 Jan;25(1):104-4 PMID: 202729
  49. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  50. A new method for the purification and identification of covalently closed circular DNA molcules.
    Nucleic Acids Res. 1978 Apr;5(4):1139-52 PMID: 26042
  51. Mapping of linear and circular forms of mouse mammary tumor virus DNA with restriction endonucleases: evidence for a large specific deletion occurring at high frequency during circularization.
    Proc Natl Acad Sci U S A. 1978 May;75(5):2112-6 PMID: 209450
  52. A 32,000-dalton nucleic acid-binding protein from avian retravirus cores possesses DNA endonuclease activity.
    Virology. 1978 Aug;89(1):119-32 PMID: 210568
  53. An avian oncovirus mutant (SE 21Q1b) deficient in genomic RNA: biological and biochemical characterization.
    Cell. 1978 Dec;15(4):1371-81 PMID: 83199
  54. Mapping unintegrated avian sarcoma virus DNA: termini of linear DNA bear 300 nucleotides present once or twice in two species of circular DNA.
    Cell. 1978 Dec;15(4):1383-95 PMID: 215324
  55. Analysis of unintegrated avian RNA tumor virus double-stranded DNA intermediates.
    J Virol. 1978 Dec;28(3):810-8 PMID: 215781
  56. Restriction endonuclease cleavage of linear and closed circular murine leukemia viral DNAs: discovery of a smaller circular form.
    Cell. 1979 Feb;16(2):323-32 PMID: 455438
  57. DNA endonucleases associated with the avian myeloblastosis virus DNA polymerase.
    Proc Natl Acad Sci U S A. 1979 Jun;76(6):2659-63 PMID: 223153
  58. Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethyl-paper and rapid hybridization by using dextran sulfate.
    Proc Natl Acad Sci U S A. 1979 Aug;76(8):3683-7 PMID: 291033
  59. A detailed model of reverse transcription and tests of crucial aspects.
    Cell. 1979 Sep;18(1):93-100 PMID: 509527
  60. Gel electrophoresis of restriction fragments.
    Methods Enzymol. 1979;68:152-76 PMID: 232210
  61. Structure of a cloned circular Moloney murine leukemia virus DNA molecule containing an inverted segment: implications for retrovirus integration.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3932-6 PMID: 6449003
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1985-12-00
Pages
779-89
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC252648
Subset
IM
Grants
NCI NIH HHS · 5T32 CA09156 · United States
NCI NIH HHS · R01 CA33147 · United States
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