Home LiteratureArticle Details
PMID: 8413250 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

DNA bending by retinoid X receptor-containing retinoid and thyroid hormone receptor complexes.

Molecular and cellular biology ·Vol. 13 ·No. 10 ·1993-10-00 ·Pages 6509-19

Lu XP, Eberhardt NL, Pfahl M

Abstract

Retinoid X receptors (RXR) have been identified as common subunits in the regulation of multiple hormonal signaling pathways. Using circular permutation and phasing analysis of specific response elements, we present evidence that RXR-retinoic acid receptor and RXR-thyroid hormone receptor heterodimer or RXR-RXR homodimer complexes induce directed DNA bends when bound to their cognate response elements. The extent of DNA bending induced by the RXR alpha-containing complexes varied and depended on the structure of the DNA-binding sites and the RXR partners. The overall bending orientation for RXR-containing complexes is directed toward the major groove of the DNA helix at the center of hormone response elements. Our observation implicates DNA bending as a possible mechanism underlying transcriptional regulation of distinct retinoid and thyroid hormone responsive genes.

MeSH Terms
Base Sequence DNA/chemistry,metabolism Electrophoresis, Polyacrylamide Gel Molecular Sequence Data Nucleic Acid Conformation Plasmids Protein Binding Receptors, Cytoplasmic and Nuclear/metabolism Receptors, Retinoic Acid Receptors, Thyroid Hormone/metabolism Retinoid X Receptors Retinoids/metabolism Transcription Factors
Chemicals
Receptors, Cytoplasmic and Nuclear Receptors, Retinoic Acid Receptors, Thyroid Hormone Retinoid X Receptors Retinoids Transcription Factors DNA
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Lu X P
La Jolla Cancer Research Foundation, La Jolla, California 92037.
Eberhardt N L
Pfahl M
References (66)
66 references, click to expand
  1. The RepA repressor can act as a transcriptional activator by inducing DNA bends.
    EMBO J. 1991 Jun;10(6):1375-82 PMID: 2026140
  2. Ligand-binding domain of thyroid hormone receptors modulates DNA binding and determines their bifunctional roles.
    New Biol. 1991 Feb;3(2):169-81 PMID: 1648384
  3. A retinoic acid response element is present in the mouse cellular retinol binding protein I (mCRBPI) promoter.
    EMBO J. 1991 Aug;10(8):2223-30 PMID: 1648481
  4. Antagonism between retinoic acid receptors.
    Mol Cell Biol. 1991 Aug;11(8):4097-103 PMID: 1649387
  5. Fos-Jun heterodimers and Jun homodimers bend DNA in opposite orientations: implications for transcription factor cooperativity.
    Cell. 1991 Jul 26;66(2):317-26 PMID: 1906785
  6. Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA.
    Nature. 1991 Aug 8;352(6335):497-505 PMID: 1865905
  7. A direct repeat in the cellular retinol-binding protein type II gene confers differential regulation by RXR and RAR.
    Cell. 1991 Aug 9;66(3):555-61 PMID: 1651173
  8. Crystal structure of a CAP-DNA complex: the DNA is bent by 90 degrees.
    Science. 1991 Aug 30;253(5023):1001-7 PMID: 1653449
  9. POU proteins bend DNA via the POU-specific domain.
    EMBO J. 1991 Oct;10(10):3007-14 PMID: 1915275
  10. Novel pathway for thyroid hormone receptor action through interaction with jun and fos oncogene activities.
    Mol Cell Biol. 1991 Dec;11(12):6016-25 PMID: 1944274
  11. Mouse retinoic acid receptor alpha 2 isoform is transcribed from a promoter that contains a retinoic acid response element.
    Proc Natl Acad Sci U S A. 1991 Nov 15;88(22):10138-42 PMID: 1658797
  12. DNA bending by Fos and Jun: the flexible hinge model.
    Science. 1991 Nov 22;254(5035):1210-4 PMID: 1957173
  13. Retinoids and their receptors in differentiation, embryogenesis, and neoplasia.
    FASEB J. 1991 Nov;5(14):2924-33 PMID: 1661245
  14. RXR beta: a coregulator that enhances binding of retinoic acid, thyroid hormone, and vitamin D receptors to their cognate response elements.
    Cell. 1991 Dec 20;67(6):1251-66 PMID: 1662118
  15. Thyroid hormone responsiveness in human growth hormone-related genes. Possible correlation with receptor-induced DNA conformational changes.
    J Biol Chem. 1992 Jan 15;267(2):913-21 PMID: 1730680
  16. 9-cis retinoic acid stereoisomer binds and activates the nuclear receptor RXR alpha.
    Nature. 1992 Jan 23;355(6358):359-61 PMID: 1309942
  17. Purification, cloning, and RXR identity of the HeLa cell factor with which RAR or TR heterodimerizes to bind target sequences efficiently.
    Cell. 1992 Jan 24;68(2):377-95 PMID: 1310259
  18. 9-cis retinoic acid is a high affinity ligand for the retinoid X receptor.
    Cell. 1992 Jan 24;68(2):397-406 PMID: 1310260
  19. Retinoid X receptor is an auxiliary protein for thyroid hormone and retinoic acid receptors.
    Nature. 1992 Jan 30;355(6359):441-6 PMID: 1310350
  20. Retinoid X receptor interacts with nuclear receptors in retinoic acid, thyroid hormone and vitamin D3 signalling.
    Nature. 1992 Jan 30;355(6359):446-9 PMID: 1310351
  21. Transcription factor TFIID induces DNA bending upon binding to the TATA element.
    Proc Natl Acad Sci U S A. 1992 Feb 1;89(3):1060-4 PMID: 1736286
  22. Lambda Int protein bridges between higher order complexes at two distant chromosomal loci attL and attR.
    Science. 1992 Apr 10;256(5054):198-203 PMID: 1533056
  23. Binding of the estrogen receptor DNA-binding domain to the estrogen response element induces DNA bending.
    Mol Cell Biol. 1992 May;12(5):2037-42 PMID: 1569939
  24. Cooperativity in transactivation between retinoic acid receptor and TFIID requires an activity analogous to E1A.
    Cell. 1992 May 1;69(3):401-12 PMID: 1316240
  25. The A. tumefaciens transcriptional activator OccR causes a bend at a target promoter, which is partially relaxed by a plant tumor metabolite.
    Cell. 1992 May 15;69(4):659-67 PMID: 1586946
  26. RAR gamma 2 expression is regulated through a retinoic acid response element embedded in Sp1 sites.
    Mol Cell Biol. 1992 Jul;12(7):2976-85 PMID: 1320193
  27. Homodimer formation of retinoid X receptor induced by 9-cis retinoic acid.
    Nature. 1992 Aug 13;358(6387):587-91 PMID: 1323763
  28. Opposite orientations of DNA bending by c-Myc and Max.
    Proc Natl Acad Sci U S A. 1992 Aug 15;89(16):7635-9 PMID: 1323849
  29. Heterodimeric receptor complexes determine 3,5,3'-triiodothyronine and retinoid signaling specificities.
    Mol Endocrinol. 1992 Jul;6(7):1153-62 PMID: 1324421
  30. Promoter context- and response element-dependent specificity of the transcriptional activation and modulating functions of retinoic acid receptors.
    Cell. 1992 Sep 18;70(6):1007-19 PMID: 1326406
  31. Thyroid hormone receptor-induced bending of specific DNA sequences is modified by an accessory factor.
    J Biol Chem. 1993 Jan 5;268(1):495-501 PMID: 8416953
  32. Crystal structure of CATGGCCATG and its implications for A-tract bending models.
    Proc Natl Acad Sci U S A. 1993 Apr 1;90(7):2930-4 PMID: 8464909
  33. Why does the electrophoretic mobility of DNA in gels vary with the length of the molecule?
    Biopolymers. 1982 May;21(5):995-7 PMID: 7082773
  34. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
  35. Theory of gel electrophoresis of DNA.
    Biopolymers. 1985 Aug;24(8):1573-93 PMID: 4041551
  36. Bending of promoter DNA on binding of heat shock transcription factor.
    Nature. 1986 Oct 2-8;323(6087):459-61 PMID: 3020432
  37. Direct evidence for DNA bending at the lambda replication origin.
    Science. 1987 Apr 24;236(4800):416-22 PMID: 2951850
  38. DNA bend direction by phase sensitive detection.
    Nature. 1987 Jul 9-15;328(6126):178-81 PMID: 3600796
  39. Helical phasing between DNA bends and the determination of bend direction.
    Nucleic Acids Res. 1987 Dec 10;15(23):9771-9 PMID: 2827112
  40. Base sequence effects in double-helical DNA. III. Average properties of curved DNA.
    Biopolymers. 1988 Apr;27(4):585-603 PMID: 3370295
  41. The thyroid hormone receptor binds with opposite transcriptional effects to a common sequence motif in thyroid hormone and estrogen response elements.
    Cell. 1988 Jul 29;54(3):313-23 PMID: 3396073
  42. Bent DNA functions as a replication enhancer in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Jul;8(7):2763-9 PMID: 3043195
  43. The intrinsic curvature of DNA in solution.
    J Mol Biol. 1988 May 5;201(1):127-37 PMID: 3418695
  44. RNA polymerase induces DNA bending at yeast mitochondrial promoters.
    Nucleic Acids Res. 1988 Oct 11;16(19):9147-63 PMID: 3050896
  45. Empirical estimation of protein-induced DNA bending angles: applications to lambda site-specific recombination complexes.
    Nucleic Acids Res. 1988 Oct 25;16(20):9687-705 PMID: 2972993
  46. Retinoic acid and thyroid hormone induce gene expression through a common responsive element.
    Nature. 1988 Nov 17;336(6196):262-5 PMID: 2848197
  47. The gamma delta resolvase bends the res site into a recombinogenic complex.
    EMBO J. 1988 Nov;7(11):3609-16 PMID: 2850169
  48. Protein-induced bending of the simian virus 40 origin of replication.
    J Mol Biol. 1988 Oct 20;203(4):1009-19 PMID: 2850367
  49. Rotational orientation of upstream curved DNA affects promoter function in Bacillus subtilis.
    J Biol Chem. 1989 Jun 25;264(18):10451-6 PMID: 2543669
  50. DNA looping generated by DNA bending protein IHF and the two domains of lambda integrase.
    Science. 1989 Jun 23;244(4911):1457-61 PMID: 2544029
  51. Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins.
    Science. 1989 Jul 28;245(4916):371-8 PMID: 2667136
  52. Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli.
    EMBO J. 1989 Dec 20;8(13):4289-96 PMID: 2512122
  53. A retinoic acid-responsive element is present in the 5' flanking region of the laminin B1 gene.
    Proc Natl Acad Sci U S A. 1989 Dec;86(23):9099-103 PMID: 2556699
  54. Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector.
    Gene. 1989 Dec 21;85(1):15-23 PMID: 2533576
  55. Bend induced by the phage phi 29 transcriptional activator in the viral late promoter is required for activation.
    J Mol Biol. 1990 Feb 20;211(4):713-25 PMID: 2107318
  56. Identification of a thyroid hormone response element in the malic enzyme gene.
    J Biol Chem. 1990 May 5;265(13):7395-400 PMID: 2332433
  57. Nuclear receptor that identifies a novel retinoic acid response pathway.
    Nature. 1990 May 17;345(6272):224-9 PMID: 2159111
  58. Activators and targets.
    Nature. 1990 Jul 26;346(6282):329-31 PMID: 2142753
  59. Molecular characterization of the GCN4-DNA complex.
    Proc Natl Acad Sci U S A. 1990 Aug;87(16):6034-8 PMID: 2201019
  60. The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons.
    Cell. 1990 Oct 5;63(1):11-22 PMID: 2208275
  61. Mapping of a retinoic acid-responsive element in the promoter region of the complement factor H gene.
    J Biol Chem. 1990 Nov 25;265(33):20065-8 PMID: 1700780
  62. Solution structure of the DNA-binding domain of the oestrogen receptor.
    Nature. 1990 Nov 29;348(6300):458-61 PMID: 2247153
  63. Integration host factor is required for the activation of developmentally regulated genes in Caulobacter.
    Genes Dev. 1990 Sep;4(9):1494-504 PMID: 2253876
  64. Functional characterization and receptor binding studies of the malic enzyme thyroid hormone response element.
    J Biol Chem. 1991 Jan 15;266(2):1008-13 PMID: 1985929
  65. Retinoic acid response element in the human alcohol dehydrogenase gene ADH3: implications for regulation of retinoic acid synthesis.
    Mol Cell Biol. 1991 Mar;11(3):1638-46 PMID: 1996113
  66. The late retinoic acid induction of laminin B1 gene transcription involves RAR binding to the responsive element.
    EMBO J. 1991 May;10(5):1149-58 PMID: 1850696
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1993-10-00
Pages
6509-19
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC364710
Subset
IM
Grants
NCI NIH HHS · CA50676 · United States
NIDDK NIH HHS · DK41206 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]