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PMID: 8514151 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae at a resolution of 2.6 kilobase pairs.

Genetics ·Vol. 134 ·No. 1 ·1993-05-00 ·Pages 81-150

Riles L, Dutchik JE, Baktha A, McCauley BK, Thayer EC, Leckie MP, Braden VV, Depke JE, Olson MV

Abstract

Physical maps of the six smallest chromosomes of Saccharomyces cerevisiae are presented. In order of increasing size, they are chromosomes I, VI, III, IX, V and VIII, comprising 2.49 megabase pairs of DNA. The maps are based on the analysis of an overlapping set of lambda and cosmid clones. Overlaps between adjacent clones were recognized by shared restriction fragments produced by the combined action of EcoRI and HindIII. The average spacing between mapped cleavage sites is 2.6 kb. Five of the six chromosomes were mapped from end to end without discontinuities; a single internal gap remains in the map of chromosome IX. The reported maps span an estimated 97% of the DNA on the six chromosomes; nearly all the missing segments are telomeric. The maps are fully cross-correlated with the previously published SfiI/NotI map of the yeast genome by A. J. Link and M. V. Olson. They have also been cross-correlated with the yeast genetic map at 51 loci.

MeSH Terms
Base Sequence Chromosome Mapping Chromosomes, Fungal Cloning, Molecular Cosmids DNA Probes DNA, Fungal/genetics Genes, Fungal Genetic Markers Molecular Sequence Data Restriction Mapping Saccharomyces cerevisiae/genetics
Chemicals
DNA Probes DNA, Fungal Genetic Markers
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Riles L
Department of Genetics, Washington University School of Medicine, St. Louis, Missouri 63110.
Dutchik J E
Baktha A
McCauley B K
Thayer E C
Leckie M P
Braden V V
Depke J E
Olson M V
References (88)
88 references, click to expand
  1. The sequence of the DNAs coding for the mating-type loci of Saccharomyces cerevisiae.
    Cell. 1981 Nov;27(1 Pt 2):15-23 PMID: 7034964
  2. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: localization of a repeated sequence containing an acid phosphatase gene near a telomere of chromosome I and chromosome VIII.
    Curr Genet. 1989 Sep;16(3):131-7 PMID: 2688928
  3. Genetic competence in Bacillus subtilis.
    Microbiol Rev. 1991 Sep;55(3):395-424 PMID: 1943994
  4. Intergenotic transformation of the Bacillus subtilis genospecies.
    J Bacteriol. 1972 Sep;111(3):705-16 PMID: 4626541
  5. Isolation of a yeast centromere and construction of functional small circular chromosomes.
    Nature. 1980 Oct 9;287(5782):504-9 PMID: 6999364
  6. Use of a screen for synthetic lethal and multicopy suppressee mutants to identify two new genes involved in morphogenesis in Saccharomyces cerevisiae.
    Mol Cell Biol. 1991 Mar;11(3):1295-305 PMID: 1996092
  7. High-frequency transformation of yeast: autonomous replication of hybrid DNA molecules.
    Proc Natl Acad Sci U S A. 1979 Mar;76(3):1035-9 PMID: 375221
  8. Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis. II. Unstable association of heterologous DNA with the recipient chromosome.
    Genetics. 1982 Nov;102(3):329-40 PMID: 6816672
  9. The direct cloning of the yeast genome using the gap-filling method and the complete physical mapping of Saccharomyces cerevisiae chromosome VI.
    Gene. 1991 Dec 20;109(1):81-7 PMID: 1756985
  10. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation of the ADE1 gene.
    J Bacteriol. 1984 Jul;159(1):413-7 PMID: 6330046
  11. An eleven-base-pair sequence determines the specificity of DNA uptake in Haemophilus transformation.
    Gene. 1980 Nov;11(3-4):311-8 PMID: 6260577
  12. The acid phosphatase genes PHO10 and PHO11 in S. cerevisiae are located at the telomeres of chromosomes VIII and I.
    Nucleic Acids Res. 1989 Feb 25;17(4):1353-69 PMID: 2646592
  13. Repression of meiotic crossing over by a centromere (CEN3) in Saccharomyces cerevisiae.
    Genetics. 1986 Nov;114(3):769-89 PMID: 3539697
  14. The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants.
    Nature. 1989 Nov 23;342(6248):396-401 PMID: 2555716
  15. Correspondence of yeast UAA suppressors to cloned tRNASerUCA genes.
    J Mol Biol. 1981 Aug 15;150(3):375-87 PMID: 6795357
  16. Proline utilization in Saccharomyces cerevisiae: analysis of the cloned PUT2 gene.
    Mol Cell Biol. 1983 Oct;3(10):1846-56 PMID: 6358862
  17. Construction of an ordered clone bank and systematic analysis of the whole transcripts of chromosome VI of Saccharomyces cerevisiae.
    Nucleic Acids Res. 1991 Mar 25;19(6):1189-95 PMID: 2030939
  18. Interspecific transformation of rifampicin resistance in the genus Bacillus.
    Mol Gen Genet. 1973 Jan 24;120(2):151-5 PMID: 4631265
  19. A small cosmid for efficient cloning of large DNA fragments.
    Gene. 1980 Nov;11(3-4):291-8 PMID: 6260575
  20. Further studies on chiasma distribution and interference in the human male.
    Ann Hum Genet. 1985 Jul;49(Pt 3):203-14 PMID: 4073834
  21. Random-clone strategy for genomic restriction mapping in yeast.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7826-30 PMID: 3463999
  22. Separation of chromosomal DNA molecules from yeast by orthogonal-field-alternation gel electrophoresis.
    Nucleic Acids Res. 1984 Jul 25;12(14):5647-64 PMID: 6379602
  23. The nucleotide sequence of the HIS4 region of yeast.
    Gene. 1982 Apr;18(1):47-59 PMID: 7049842
  24. Overlap hybridization screening: isolation and characterization of overlapping DNA fragments surrounding the leu2 gene on yeast chromosome III.
    Gene. 1979 Feb;5(2):111-26 PMID: 376402
  25. Cloning of hexokinase isoenzyme PI from Saccharomyces cerevisiae: PI transformants confirm the unique role of hexokinase isoenzyme PII for glucose repression in yeasts.
    Mol Gen Genet. 1984;198(2):50-4 PMID: 6394965
  26. Orthogonal-field-alternation gel electrophoresis.
    Methods Enzymol. 1987;155:468-82 PMID: 3431469
  27. Physical map of the Saccharomyces cerevisiae genome at 110-kilobase resolution.
    Genetics. 1991 Apr;127(4):681-98 PMID: 2029969
  28. Nucleotide sequences of STE2 and STE3, cell type-specific sterile genes from Saccharomyces cerevisiae.
    EMBO J. 1985 Oct;4(10):2643-8 PMID: 16453635
  29. Nucleotide sequence of a mutant eukaryotic gene: the yeast tyrosine-inserting ochre suppressor SUP4-o.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5453-7 PMID: 341157
  30. Polymorphisms on the right arm of yeast chromosome III associated with Ty transposition and recombination events.
    Nucleic Acids Res. 1987 Nov 11;15(21):8963-82 PMID: 2825123
  31. A lambda DNA protocol based on purification of phage on DEAE-cellulose.
    Methods Enzymol. 1987;153:69-82 PMID: 2963200
  32. Structure of the yeast HIS5 gene responsive to general control of amino acid biosynthesis.
    Mol Gen Genet. 1987 Jun;208(1-2):159-67 PMID: 3302607
  33. The Saccharomyces cerevisiae chromosome III left telomere has a type X, but not a type Y', ARS region.
    Mol Cell Biol. 1986 Apr;6(4):1352-6 PMID: 3537702
  34. Isolation and characterization of the SPT2 gene, a negative regulator of Ty-controlled yeast gene expression.
    Mol Cell Biol. 1985 Jul;5(7):1543-53 PMID: 2991744
  35. Isolation and characterization of the centromere from chromosome V (CEN5) of Saccharomyces cerevisiae.
    Mol Cell Biol. 1984 Jan;4(1):86-91 PMID: 6366514
  36. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation and characterization of the CDC24 gene and adjacent regions of the chromosome.
    Mol Cell Biol. 1986 Dec;6(12):4516-25 PMID: 3540615
  37. Regulation of the bacterial cell wall: analysis of a mutant of Bacillus subtilis defective in biosynthesis of teichoic acid.
    J Bacteriol. 1972 Apr;110(1):281-90 PMID: 4622900
  38. Complete nucleotide sequence of the hexokinase PI gene (HXK1) of Saccharomyces cerevisiae.
    Gene. 1985;39(1):95-101 PMID: 3908224
  39. Temporal comparison of recombination and synaptonemal complex formation during meiosis in S. cerevisiae.
    Cell. 1991 Sep 20;66(6):1239-56 PMID: 1913808
  40. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  41. Identification, cloning and sequence determination of the genes specifying hexokinase A and B from yeast.
    Nucleic Acids Res. 1986 Jan 24;14(2):945-63 PMID: 3003701
  42. Effects of altered 5'-flanking sequences on the in vivo expression of a Saccharomyces cerevisiae tRNATyr gene.
    Mol Cell Biol. 1984 Apr;4(4):657-65 PMID: 6371493
  43. The subtelomeric Y' repeat family in Saccharomyces cerevisiae: an experimental system for repeated sequence evolution.
    Genetics. 1990 Mar;124(3):533-45 PMID: 2179052
  44. Identification of the yeast DNA sequences that correspond to specific tyrosine-inserting nonsense suppressor loci.
    J Mol Biol. 1979 Aug 15;132(3):387-410 PMID: 533897
  45. Structure and organization of transposable mating type cassettes in Saccharomyces yeasts.
    Proc Natl Acad Sci U S A. 1980 May;77(5):2839-43 PMID: 6248870
  46. INTERSPECIFIC TRANSFORMATION IN BACILLUS.
    J Bacteriol. 1963 Feb;85(2):461-7 PMID: 16561996
  47. Only one of two closely related yeast suppressor tRNA genes contains an intervening sequence.
    Nature. 1981 Jun 11;291(5815):464-9 PMID: 6262655
  48. Chromosome size-dependent control of meiotic recombination.
    Science. 1992 Apr 10;256(5054):228-32 PMID: 1566070
  49. Evolution of the dispersed SUC gene family of Saccharomyces by rearrangements of chromosome telomeres.
    Mol Cell Biol. 1985 Nov;5(11):2894-902 PMID: 3018485
  50. RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation.
    Mol Cell Biol. 1985 Jan;5(1):17-26 PMID: 3885009
  51. Role of conserved sequence elements in yeast centromere DNA.
    EMBO J. 1985 Jul;4(7):1867-74 PMID: 2992949
  52. Analysis of the THR4 region on chromosome III of the yeast Saccharomyces cerevisiae.
    Yeast. 1990 Jul-Aug;6(4):353-61 PMID: 2204248
  53. Complete nucleotide sequence of the Escherichia coli plasmid pBR322.
    Cold Spring Harb Symp Quant Biol. 1979;43 Pt 1:77-90 PMID: 383387
  54. Protease B of the lysosomelike vacuole of the yeast Saccharomyces cerevisiae is homologous to the subtilisin family of serine proteases.
    Mol Cell Biol. 1987 Dec;7(12):4390-9 PMID: 3325823
  55. Interspecies transformation between Bacillus subtilis and Bacillus licheniformis.
    Biochem Biophys Res Commun. 1966 May 25;23(4):543-8 PMID: 4960110
  56. Isolation, DNA sequence, and regulation of a meiosis-specific eukaryotic recombination gene.
    Proc Natl Acad Sci U S A. 1987 Nov;84(22):8035-9 PMID: 3317399
  57. Chromosome III of Saccharomyces cerevisiae: an ordered clone bank, a detailed restriction map and analysis of transcripts suggest the presence of 160 genes.
    Yeast. 1990 Sep-Oct;6(5):383-401 PMID: 2220074
  58. Cloning large segments of genomic DNA using cosmid vectors.
    Methods Enzymol. 1987;152:199-212 PMID: 2958679
  59. Cloning genes by complementation in yeast.
    Methods Enzymol. 1991;194:195-230 PMID: 2005788
  60. Gene conservation in Bacillus species. I. Conserved genetic and nucleic acid base sequence homologies.
    Proc Natl Acad Sci U S A. 1965 Aug;54(2):491-8 PMID: 4956287
  61. RNA and homology mapping of two DNA fragments with repressible acid phosphatase genes from Saccharomyces cerevisiae.
    Mol Cell Biol. 1983 Apr;3(4):562-9 PMID: 6343839
  62. Enhanced meiotic recombination on the smallest chromosome of Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1989 May;86(10):3694-8 PMID: 2657726
  63. Restriction and modification in B. subtilis. Biological aspects.
    Mol Gen Genet. 1974;131(3):181-91 PMID: 4215951
  64. Molecular fate of heterologous bacterial DNA in competent Bacillus subtilis: further characterization of unstable association between donor and recipient DNA and the involvement of the cellular membrane.
    Mol Gen Genet. 1984;195(1-2):200-8 PMID: 6436648
  65. Analysis of a circular derivative of Saccharomyces cerevisiae chromosome III: a physical map and identification and location of ARS elements.
    Genetics. 1991 Oct;129(2):343-57 PMID: 1683846
  66. The Saccharomyces cerevisiae BAR1 gene encodes an exported protein with homology to pepsin.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):55-9 PMID: 3124102
  67. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation of the MAK16 gene and analysis of an adjacent gene essential for growth at low temperatures.
    Yeast. 1987 Mar;3(1):51-7 PMID: 3332963
  68. A yeast gene encoding a protein homologous to the human c-has/bas proto-oncogene product.
    Nature. 1983 Dec 15-21;306(5944):704-7 PMID: 6318115
  69. Plasmids of Escherichia coli as cloning vectors.
    Methods Enzymol. 1979;68:245-67 PMID: 232214
  70. Molecular cloning of chromosome I DNA from Saccharomyces cerevisiae: isolation and analysis of the CEN1-ADE1-CDC15 region.
    Mol Cell Biol. 1987 Jan;7(1):410-9 PMID: 3031471
  71. Primary structure and transcription of an amplified genetic locus: the CUP1 locus of yeast.
    Proc Natl Acad Sci U S A. 1984 Jan;81(2):337-41 PMID: 6364141
  72. Isolation of the yeast structural gene for the membrane-associated enzyme phosphatidylserine synthase.
    Proc Natl Acad Sci U S A. 1983 Dec;80(23):7279-83 PMID: 6316353
  73. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  74. Homologous recombination in Escherichia coli: dependence on substrate length and homology.
    Genetics. 1986 Mar;112(3):441-57 PMID: 3007275
  75. Transformation in yeast: development of a hybrid cloning vector and isolation of the CAN1 gene.
    Gene. 1979 Dec;8(1):121-33 PMID: 395029
  76. Molecular cloning of the gene for the E1 alpha subunit of the pyruvate dehydrogenase complex from Saccharomyces cerevisiae.
    Eur J Biochem. 1990 Aug 17;191(3):769-74 PMID: 2202601
  77. RAD4 gene of Saccharomyces cerevisiae: molecular cloning and partial characterization of a gene that is inactivated in Escherichia coli.
    Mol Cell Biol. 1987 Mar;7(3):1180-92 PMID: 3550431
  78. Delta sequences and double symmetry in a yeast chromosomal replicator region.
    J Mol Biol. 1982 Apr 5;156(2):293-307 PMID: 6283100
  79. Yeast metallothionein and applications in biotechnology.
    Microbiol Rev. 1987 Sep;51(3):351-64 PMID: 3312986
  80. Disruption of the CHO1 gene encoding phosphatidylserine synthase in Saccharomyces cerevisiae.
    J Biochem. 1988 Dec;104(6):894-900 PMID: 2854123
  81. Genetic studies on site-specific endodeoxyribonucleases in Bacillus subtilis: multiple modification and restriction systems in transformants of Bacillus subtilis 168.
    Mol Gen Genet. 1980 Feb;177(3):359-68 PMID: 6246395
  82. Interspecies transformation in Bacillus: sequence heterology as the major barrier.
    J Bacteriol. 1978 Mar;133(3):1237-45 PMID: 417063
  83. Structural comparison of the yeast cell division cycle gene CDC4 and a related pseudogene.
    J Mol Biol. 1987 May 20;195(2):233-45 PMID: 3309335
  84. Evidence for translational regulation of the activator of general amino acid control in yeast.
    Proc Natl Acad Sci U S A. 1984 Oct;81(20):6442-6 PMID: 6387704
  85. The yeast alpha-factor receptor: structural properties deduced from the sequence of the STE2 gene.
    Nucleic Acids Res. 1985 Dec 9;13(23):8463-75 PMID: 3001640
  86. Heterospecific transformation in the genus Haemophilus.
    Mol Gen Genet. 1984;193(2):358-63 PMID: 6607396
  87. Centromeric DNA from chromosome VI in Saccharomyces cerevisiae strains.
    EMBO J. 1982;1(12):1605-11 PMID: 6327282
  88. Nucleotide sequence of the yeast SUC2 gene for invertase.
    Nucleic Acids Res. 1983 Mar 25;11(6):1943-54 PMID: 6300785
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
1993-05-00
Pages
81-150
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1205446
Subset
IM
Grants
NHGRI NIH HHS · HG00334 · United States
NHGRI NIH HHS · HG00369 · United States
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