Home LiteratureArticle Details
PMID: 9294445 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) plays a conditional role in antibiotic production and morphological differentiation.

Journal of bacteriology ·Vol. 179 ·No. 18 ·1997-09-00 ·Pages 5854-61

Chakraburtty R, Bibb M

Abstract

Deletion of most of the coding region of the ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) resulted in loss of ppGpp synthesis, both upon entry into stationary phase under conditions of nitrogen limitation and following amino acid starvation during exponential growth, but had no effect on growth rate. The relA mutant, which showed continued rRNA synthesis upon amino acid depletion (the relaxed response), failed to produce the antibiotics undecylprodigiosin (Red) and actinorhodin (Act) under conditions of nitrogen limitation. The latter appears to reflect diminished transcription of pathway-specific regulatory genes for Red and Act production, redD and actII-ORF4, respectively. In addition to the changes in secondary metabolism, the relA mutant showed a marked delay in the onset and extent of morphological differentiation, resulting in a conspicuously altered colony morphology.

MeSH Terms
Anthraquinones/metabolism Bacterial Proteins Gene Expression Regulation, Bacterial Genetic Complementation Test Guanosine Tetraphosphate/biosynthesis Ligases/physiology Nitrogen/metabolism Prodigiosin/analogs & derivatives,biosynthesis RNA, Bacterial/biosynthesis Streptomyces/cytology,enzymology,genetics Trans-Activators/genetics Transcription, Genetic
Chemicals
Anthraquinones Bacterial Proteins RNA, Bacterial Trans-Activators redD protein, Streptomyces coelicolor Guanosine Tetraphosphate undecylprodigiosin Ligases guanosine 3',5'-polyphosphate synthetases actinorhodin Nitrogen Prodigiosin
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Chakraburtty R
Department of Genetics, John Innes Centre, Norwich Research Park, Colney, United Kingdom.
Bibb M
References (46)
46 references, click to expand
  1. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  2. Cloning, characterization and disruption of a (p)ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2).
    Mol Microbiol. 1996 Jan;19(2):357-368 PMID: 8825780
  3. Stringent control in E. coli.
    Annu Rev Genet. 1979;13:393-415 PMID: 94252
  4. The expression of Streptomyces and Escherichia coli drug-resistance determinants cloned into the Streptomyces phage phi C31.
    Gene. 1982 Jul-Aug;19(1):21-32 PMID: 6292047
  5. Studies on transformation of Escherichia coli with plasmids.
    J Mol Biol. 1983 Jun 5;166(4):557-80 PMID: 6345791
  6. Nucleotide sequence of the hygromycin B phosphotransferase gene from Streptomyces hygroscopicus.
    Nucleic Acids Res. 1986 Feb 25;14(4):1565-81 PMID: 3005976
  7. Occurrence of the stringent response in Streptomyces sp. and its significance for the initiation of morphological and physiological differentiation.
    J Gen Microbiol. 1986 Sep;132(9):2621-31 PMID: 3794657
  8. Physical and genetic characterisation of the gene cluster for the antibiotic actinorhodin in Streptomyces coelicolor A3(2).
    Mol Gen Genet. 1986 Oct;205(1):66-73 PMID: 3025560
  9. Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor.
    J Bacteriol. 1987 Aug;169(8):3608-16 PMID: 3112126
  10. Organisation of the ribosomal RNA genes in Streptomyces coelicolor A3(2).
    Mol Gen Genet. 1988 Feb;211(2):191-6 PMID: 2832699
  11. Transcriptional analysis of the 16S rRNA gene of the rrnD gene set of Streptomyces coelicolor A3(2).
    Mol Microbiol. 1988 Sep;2(5):569-79 PMID: 2460716
  12. Basal ppGpp level adjustment shown by new spoT mutants affect steady state growth rates and rrnA ribosomal promoter regulation in Escherichia coli.
    Mol Gen Genet. 1988 Aug;213(2-3):214-22 PMID: 2460731
  13. Intergeneric conjugation between Escherichia coli and Streptomyces species.
    J Bacteriol. 1989 Jun;171(6):3583-5 PMID: 2656662
  14. Protein sequences encoded by the relA and the spoT genes of Escherichia coli are interrelated.
    J Biol Chem. 1989 Jun 5;264(16):9122-5 PMID: 2542299
  15. Streptomyces relC mutants with an altered ribosomal protein ST-L11 and genetic analysis of a Streptomyces griseus relC mutant.
    J Bacteriol. 1990 Jul;172(7):4008-16 PMID: 2113916
  16. Guanosine tetraphosphate (ppGpp) dependence of the growth rate control of rrnB P1 promoter activity in Escherichia coli.
    J Biol Chem. 1990 Jul 15;265(20):11605-14 PMID: 2114400
  17. Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli.
    Proc Natl Acad Sci U S A. 1990 Jul;87(14):5533-7 PMID: 2196571
  18. Overexpression of the relA gene in Escherichia coli.
    J Biol Chem. 1991 Feb 25;266(6):3760-7 PMID: 1899866
  19. Residual guanosine 3',5'-bispyrophosphate synthetic activity of relA null mutants can be eliminated by spoT null mutations.
    J Biol Chem. 1991 Mar 25;266(9):5980-90 PMID: 2005134
  20. Escherichia coli ppGpp synthetase II activity requires spoT.
    J Biol Chem. 1991 Mar 25;266(9):5991-9 PMID: 2005135
  21. Spore colour in Streptomyces coelicolor A3(2) involves the developmentally regulated synthesis of a compound biosynthetically related to polyketide antibiotics.
    Mol Microbiol. 1990 Oct;4(10):1679-91 PMID: 2077356
  22. A relaxed (rel) mutant of Streptomyces coelicolor A3(2) with a missing ribosomal protein lacks the ability to accumulate ppGpp, A-factor and prodigiosin.
    J Gen Microbiol. 1990 Dec;136(12):2405-12 PMID: 2079628
  23. The stringent response in Streptomyces coelicolor A3(2).
    Mol Microbiol. 1991 Feb;5(2):289-98 PMID: 1710311
  24. The act cluster contains regulatory and antibiotic export genes, direct targets for translational control by the bldA tRNA gene of Streptomyces.
    Cell. 1991 Aug 23;66(4):769-80 PMID: 1878971
  25. Analysis of the integration function of the streptomycete bacteriophage phi C31.
    J Mol Biol. 1991 Dec 20;222(4):897-908 PMID: 1762157
  26. Complex organization of the Streptomyces avermitilis genes encoding the avermectin polyketide synthase.
    Gene. 1992 Jun 15;115(1-2):119-25 PMID: 1612425
  27. Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp.
    Gene. 1992 Jul 1;116(1):43-9 PMID: 1628843
  28. A combined genetic and physical map of the Streptomyces coelicolor A3(2) chromosome.
    J Bacteriol. 1992 Sep;174(17):5496-507 PMID: 1512187
  29. Transcriptional regulation of the redD transcriptional activator gene accounts for growth-phase-dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2).
    Mol Microbiol. 1992 Oct;6(19):2797-804 PMID: 1435258
  30. Stationary-phase production of the antibiotic actinorhodin in Streptomyces coelicolor A3(2) is transcriptionally regulated.
    Mol Microbiol. 1993 Mar;7(6):837-45 PMID: 7683365
  31. Characterization of RNA and DNA synthesis in Escherichia coli strains devoid of ppGpp.
    J Biol Chem. 1993 May 25;268(15):10851-62 PMID: 7684368
  32. Depletion of functional ribosomal RNA operons in Escherichia coli causes increased expression of the remaining intact copies.
    EMBO J. 1993 Nov;12(11):4305-15 PMID: 8223440
  33. Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp.
    J Bacteriol. 1993 Dec;175(24):7982-9 PMID: 8253685
  34. Isolation of "relaxed" mutants of Escherichia coli.
    J Bacteriol. 1968 Feb;95(2):729-31 PMID: 4867755
  35. afsR is a pleiotropic but conditionally required regulatory gene for antibiotic production in Streptomyces coelicolor A3(2).
    Mol Microbiol. 1996 Jul;21(2):385-96 PMID: 8858592
  36. Denaturation of circular or linear DNA facilitates targeted integrative transformation of Streptomyces coelicolor A3(2): possible relevance to other organisms.
    J Bacteriol. 1997 Jan;179(1):122-7 PMID: 8981988
  37. Sigma-E is required for the production of the antibiotic actinomycin in Streptomyces antibioticus.
    Mol Microbiol. 1997 Jan;23(1):169-78 PMID: 9004230
  38. bldA dependence of undecylprodigiosin production in Streptomyces coelicolor A3(2) involves a pathway-specific regulatory cascade.
    J Bacteriol. 1997 Feb;179(3):627-33 PMID: 9006013
  39. Growth rate-dependent control of the rrnB P1 core promoter in Escherichia coli.
    J Bacteriol. 1994 Sep;176(17):5560-4 PMID: 8071240
  40. Ectopic production of guanosine penta- and tetraphosphate can initiate early developmental gene expression in Myxococcus xanthus.
    Genes Dev. 1995 Jul 1;9(13):1633-44 PMID: 7628697
  41. Two genes involved in the phase-variable phi C31 resistance mechanism of Streptomyces coelicolor A3(2).
    J Bacteriol. 1995 Aug;177(16):4681-9 PMID: 7642495
  42. A relA/spoT homologous gene from Streptomyces coelicolor A3(2) controls antibiotic biosynthetic genes.
    J Biol Chem. 1996 May 3;271(18):10627-34 PMID: 8631867
  43. Production of actinorhodin-related "blue pigments" by Streptomyces coelicolor A3(2).
    J Bacteriol. 1996 Apr;178(8):2238-44 PMID: 8636024
  44. Genetics of antibiotic production in Streptomyces coelicolor A3(2), a model streptomycete.
    Biotechnology. 1995;28:65-102 PMID: 8688641
  45. Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase.
    J Bacteriol. 1996 Jul;178(14):4281-8 PMID: 8763958
  46. Transposition of TnA does not generate deletions.
    Mol Gen Genet. 1977 Jul 20;154(2):205-11 PMID: 331086
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1997-09-00
Pages
5854-61
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC179477
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]