Home LiteratureArticle Details
PMID: 10880469 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Genetic analyses of Schizosaccharomyces pombe dna2(+) reveal that dna2 plays an essential role in Okazaki fragment metabolism.

Genetics ·Vol. 155 ·No. 3 ·2000-07-00 ·Pages 1055-67

Kang HY, Choi E, Bae SH, Lee KH, Gim BS, Kim HD, Park C, MacNeill SA, Seo YS

Abstract

In this report, we investigated the phenotypes caused by temperature-sensitive (ts) mutant alleles of dna2(+) of Schizosaccharomyces pombe, a homologue of DNA2 of budding yeast, in an attempt to further define its function in vivo with respect to lagging-strand synthesis during the S-phase of the cell cycle. At the restrictive temperature, dna2 (ts) cells arrested at late S-phase but were unaffected in bulk DNA synthesis. Moreover, they exhibited aberrant mitosis when combined with checkpoint mutations, in keeping with a role for Dna2 in Okazaki fragment maturation. Similarly, spores in which dna2(+) was disrupted duplicated their DNA content during germination and also arrested at late S-phase. Inactivation of dna2(+) led to chromosome fragmentation strikingly similar to that seen when cdc17(+), the DNA ligase I gene, is inactivated. The temperature-dependent lethality of dna2 (ts) mutants was suppressed by overexpression of genes encoding subunits of polymerase delta (cdc1(+) and cdc27(+)), DNA ligase I (cdc17(+)), and Fen-1 (rad2(+)). Each of these gene products plays a role in the elongation or maturation of Okazaki fragments. Moreover, they all interacted with S. pombe Dna2 in a yeast two-hybrid assay, albeit to different extents. On the basis of these results, we conclude that dna2(+) plays a direct role in the Okazaki fragment elongation and maturation. We propose that dna2(+) acts as a central protein to form a complex with other proteins required to coordinate the multienzyme process for Okazaki fragment elongation and maturation.

MeSH Terms
Adenosine Triphosphatases/antagonists & inhibitors,genetics,metabolism Cell Cycle Proteins/genetics,metabolism Cell Line Chromosomes/genetics DNA/metabolism DNA Helicases/antagonists & inhibitors,genetics,metabolism DNA Polymerase I/genetics,metabolism DNA Replication/genetics DNA-Binding Proteins Endodeoxyribonucleases Fungal Proteins/genetics,metabolism Gene Dosage Genes, Lethal Genes, cdc Guanine Nucleotide Exchange Factors Mutagenicity Tests Proto-Oncogene Proteins/genetics,metabolism S Phase/genetics Saccharomyces cerevisiae/genetics Saccharomyces cerevisiae Proteins Schizosaccharomyces/enzymology,genetics Sequence Analysis, DNA Spores, Fungal/genetics,growth & development Temperature Two-Hybrid System Techniques Ultraviolet Rays
Chemicals
CDC1 protein, S cerevisiae CDC24 protein, S cerevisiae Cell Cycle Proteins DNA-Binding Proteins Fungal Proteins Guanine Nucleotide Exchange Factors Okazaki fragments Proto-Oncogene Proteins Saccharomyces cerevisiae Proteins RAD2 protein, S cerevisiae DNA DNA Polymerase I POL1 protein, S cerevisiae Endodeoxyribonucleases Adenosine Triphosphatases DNA Helicases DNA2 protein, S cerevisiae
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Kang H Y
National Creative Research Initiative Center for Cell Cycle Control, Samsung Biomedical Research Institute, Sungkyunkwan University School of Medicine, Changan-Ku Suwon, Kyunggi-Do, 440-746, Korea.
Choi E
Bae S H
Lee K H
Gim B S
Kim H D
Park C
MacNeill S A
Seo Y S
References (52)
52 references, click to expand
  1. Versatile shuttle vectors and genomic libraries for use with Schizosaccharomyces pombe.
    Gene. 1992 May 1;114(1):59-66 PMID: 1587485
  2. Enzymes and reactions at the eukaryotic DNA replication fork.
    J Biol Chem. 1997 Feb 21;272(8):4647-50 PMID: 9081985
  3. Isolation and analysis of the fission yeast gene encoding polymerase delta accessory protein PCNA.
    EMBO J. 1992 Dec;11(13):5111-20 PMID: 1361173
  4. Thiamine-repressible expression vectors pREP and pRIP for fission yeast.
    Gene. 1993 Jan 15;123(1):127-30 PMID: 8422996
  5. Comparison of Schizosaccharomyces pombe expression systems.
    Nucleic Acids Res. 1993 Jun 25;21(12):2955-6 PMID: 8332516
  6. Fission yeast with DNA polymerase delta temperature-sensitive alleles exhibits cell division cycle phenotype.
    Nucleic Acids Res. 1993 Aug 11;21(16):3821-8 PMID: 8367300
  7. Reconstitution of complete SV40 DNA replication with purified replication factors.
    J Biol Chem. 1994 Apr 8;269(14):10923-34 PMID: 8144677
  8. Anatomy of a DNA replication fork revealed by reconstitution of SV40 DNA replication in vitro.
    Nature. 1994 May 19;369(6477):207-12 PMID: 7910375
  9. Structural and functional conservation of the human homolog of the Schizosaccharomyces pombe rad2 gene, which is required for chromosome segregation and recovery from DNA damage.
    Mol Cell Biol. 1994 Jul;14(7):4878-88 PMID: 8007985
  10. Smart machines at the DNA replication fork.
    Cell. 1994 Sep 9;78(5):725-8 PMID: 8087839
  11. Characterization of a mutant strain of Saccharomyces cerevisiae with a deletion of the RAD27 gene, a structural homolog of the RAD2 nucleotide excision repair gene.
    J Bacteriol. 1995 Jan;177(2):364-71 PMID: 7814325
  12. Conditional lethality of null mutations in RTH1 that encodes the yeast counterpart of a mammalian 5'- to 3'-exonuclease required for lagging strand DNA synthesis in reconstituted systems.
    J Biol Chem. 1995 Mar 3;270(9):4193-6 PMID: 7876174
  13. Requirement of the yeast RTH1 5' to 3' exonuclease for the stability of simple repetitive DNA.
    Science. 1995 Jul 14;269(5221):238-40 PMID: 7618086
  14. Mutations in RAD27 define a potential link between G1 cyclins and DNA replication.
    Mol Cell Biol. 1995 Aug;15(8):4291-302 PMID: 7623823
  15. A yeast gene required for DNA replication encodes a protein with homology to DNA helicases.
    Proc Natl Acad Sci U S A. 1995 Aug 15;92(17):7642-6 PMID: 7644470
  16. Lagging strand DNA synthesis at the eukaryotic replication fork involves binding and stimulation of FEN-1 by proliferating cell nuclear antigen.
    J Biol Chem. 1995 Sep 22;270(38):22109-12 PMID: 7673186
  17. DNA2 encodes a DNA helicase essential for replication of eukaryotic chromosomes.
    J Biol Chem. 1995 Nov 10;270(45):26766-9 PMID: 7592912
  18. The fission yeast Cdc1 protein, a homologue of the small subunit of DNA polymerase delta, binds to Pol3 and Cdc27.
    EMBO J. 1996 Sep 2;15(17):4613-28 PMID: 8887553
  19. Isolation and characterization of the Schizosaccharomyces pombe rhp9 gene: a gene required for the DNA damage checkpoint but not the replication checkpoint.
    Nucleic Acids Res. 1997 Jun 1;25(11):2138-46 PMID: 9153313
  20. DNA polymerase delta isolated from Schizosaccharomyces pombe contains five subunits.
    Proc Natl Acad Sci U S A. 1997 Oct 14;94(21):11244-9 PMID: 9326594
  21. Characterization of Saccharomyces cerevisiae dna2 mutants suggests a role for the helicase late in S phase.
    Mol Biol Cell. 1997 Dec;8(12):2519-37 PMID: 9398673
  22. Involvement of flap endonuclease 1 in base excision DNA repair.
    J Biol Chem. 1998 Apr 10;273(15):8842-8 PMID: 9535864
  23. DNA ligase I selectively affects DNA synthesis by DNA polymerases delta and epsilon suggesting differential functions in DNA replication and repair.
    J Biol Chem. 1998 Jun 5;273(23):14322-30 PMID: 9603940
  24. Fission yeast cdc24(+) encodes a novel replication factor required for chromosome integrity.
    Genetics. 1998 Jul;149(3):1221-33 PMID: 9649516
  25. Characterization of the two small subunits of Saccharomyces cerevisiae DNA polymerase delta.
    J Biol Chem. 1998 Jul 31;273(31):19747-55 PMID: 9677405
  26. Replication protein A stimulates long patch DNA base excision repair.
    J Biol Chem. 1998 Oct 16;273(42):27492-8 PMID: 9765279
  27. Cell division cycle mutants altered in DNA replication and mitosis in the fission yeast Schizosaccharomyces pombe.
    Mol Gen Genet. 1981;182(1):119-24 PMID: 6943408
  28. Cloning and characterization of the Schizosaccharomyces pombe DNA ligase gene CDC17.
    Gene. 1986;41(2-3):321-5 PMID: 3011605
  29. The RAD9 gene controls the cell cycle response to DNA damage in Saccharomyces cerevisiae.
    Science. 1988 Jul 15;241(4863):317-22 PMID: 3291120
  30. Complete enzymatic synthesis of DNA containing the SV40 origin of replication.
    J Biol Chem. 1988 Dec 25;263(36):19723-33 PMID: 2848839
  31. Monofunctional alkylating agent-induced S-phase-dependent DNA damage.
    Mutat Res. 1989 Apr;216(2):111-8 PMID: 2927413
  32. Two related superfamilies of putative helicases involved in replication, recombination, repair and expression of DNA and RNA genomes.
    Nucleic Acids Res. 1989 Jun 26;17(12):4713-30 PMID: 2546125
  33. Sequential initiation of lagging and leading strand synthesis by two different polymerase complexes at the SV40 DNA replication origin.
    Nature. 1990 Aug 9;346(6284):534-9 PMID: 2165567
  34. Discontinuous DNA synthesis by purified mammalian proteins.
    J Biol Chem. 1990 Oct 25;265(30):18461-71 PMID: 2170412
  35. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe.
    Methods Enzymol. 1991;194:795-823 PMID: 2005825
  36. High efficiency transformation of Schizosaccharomyces pombe by electroporation.
    Nucleic Acids Res. 1992 Feb 11;20(3):621 PMID: 1741305
  37. The multifunctional folic acid synthesis fas gene of Pneumocystis carinii appears to encode dihydropteroate synthase and hydroxymethyldihydropterin pyrophosphokinase.
    Gene. 1992 Mar 15;112(2):213-8 PMID: 1313386
  38. Improved method for high efficiency transformation of intact yeast cells.
    Nucleic Acids Res. 1992 Mar 25;20(6):1425 PMID: 1561104
  39. Pbp1p, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation.
    Mol Cell Biol. 1998 Dec;18(12):7383-96 PMID: 9819425
  40. Proliferating cell nuclear antigen facilitates excision in long-patch base excision repair.
    J Biol Chem. 1999 Feb 12;274(7):4354-63 PMID: 9933638
  41. A role for FEN-1 in nonhomologous DNA end joining: the order of strand annealing and nucleolytic processing events.
    Proc Natl Acad Sci U S A. 1999 Feb 16;96(4):1303-8 PMID: 9990019
  42. Dna2 mutants reveal interactions with Dna polymerase alpha and Ctf4, a Pol alpha accessory factor, and show that full Dna2 helicase activity is not essential for growth.
    Genetics. 1999 Apr;151(4):1459-70 PMID: 10101169
  43. Accumulation of single-stranded DNA and destabilization of telomeric repeats in yeast mutant strains carrying a deletion of RAD27.
    Mol Cell Biol. 1999 Jun;19(6):4143-52 PMID: 10330154
  44. Expansion and length-dependent fragility of CTG repeats in yeast.
    Science. 1998 Feb 6;279(5352):853-6 PMID: 9452383
  45. Yeast RNase H(35) is the counterpart of the mammalian RNase HI, and is evolutionarily related to prokaryotic RNase HII.
    FEBS Lett. 1998 Jan 2;421(1):23-6 PMID: 9462832
  46. Polymerases and the replisome: machines within machines.
    Cell. 1998 Feb 6;92(3):295-305 PMID: 9476890
  47. Assignment of the closest human homologue (DNA2L:KIAA0083) of the yeast Dna2 helicase gene to chromosome band 10q21.3-q22.1.
    Genomics. 1996 Nov 1;37(3):408-10 PMID: 8938459
  48. Human RAD2 homolog 1 5'- to 3'-exo/endonuclease can efficiently excise a displaced DNA fragment containing a 5'-terminal abasic lesion by endonuclease activity.
    J Biol Chem. 1996 Nov 22;271(47):30068-76 PMID: 8939954
  49. A novel mutation avoidance mechanism dependent on S. cerevisiae RAD27 is distinct from DNA mismatch repair.
    Cell. 1997 Jan 24;88(2):253-63 PMID: 9008166
  50. A yeast replicative helicase, Dna2 helicase, interacts with yeast FEN-1 nuclease in carrying out its essential function.
    Mol Cell Biol. 1997 Apr;17(4):2136-42 PMID: 9121462
  51. The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair.
    Bioessays. 1997 Mar;19(3):233-40 PMID: 9080773
  52. Fission yeast genes involved in coupling mitosis to completion of DNA replication.
    Genes Dev. 1992 Nov;6(11):2035-46 PMID: 1427071
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
2000-07-00
Pages
1055-67
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1461167
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]