Home LiteratureArticle Details
PMID: 11522818 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

An enhancer element 6 kb upstream of the mouse HNF4alpha1 promoter is activated by glucocorticoids and liver-enriched transcription factors.

Nucleic acids research ·Vol. 29 ·No. 17 ·2001-09-01 ·Pages 3495-505

Bailly A, Torres-Padilla ME, Tinel AP, Weiss MC

Abstract

We have characterized a 700 bp enhancer element around -6 kb relative to the HNF4alpha1 transcription start. This element increases activity and confers glucocorticoid induction to a heterologous as well as the homologous promoters in differentiated hepatoma cells and is transactivated by HNF4alpha1, HNF4alpha7, HNF1alpha and HNF1beta in dedifferentiated hepatoma cells. A 240 bp sub-region conserves basal and hormone-induced enhancer activity. It contains HNF1, HNF4, HNF3 and C/EBP binding sites as shown by DNase I footprinting and electrophoretic mobility shift assays using nuclear extracts and/or recombinant HNF1alpha and HNF4alpha1. Mutation analyses showed that the HNF1 site is essential for HNF1alpha transactivation and is required for full basal enhancer activity, as is the C/EBP site. Glucocorticoid response element consensus sites which overlap the C/EBP, HNF4 and HNF3 sites are crucial for optimal hormonal induction. We present a model that accounts for weak expression of HNF4alpha1 in the embryonic liver and strong expression in the newborn/adult liver via the binding sites identified in the enhancer.

MeSH Terms
Animals Base Sequence Basic Helix-Loop-Helix Leucine Zipper Transcription Factors Binding Sites/genetics CCAAT-Enhancer-Binding Protein-alpha/metabolism Chloramphenicol O-Acetyltransferase/genetics,metabolism DNA-Binding Proteins/metabolism Dexamethasone/pharmacology Enhancer Elements, Genetic/genetics,physiology Gene Expression Regulation/drug effects Glucocorticoids/pharmacology Hepatocyte Nuclear Factor 1 Hepatocyte Nuclear Factor 1-alpha Hepatocyte Nuclear Factor 1-beta Hepatocyte Nuclear Factor 3-alpha Hepatocyte Nuclear Factor 4 Liver/metabolism Luciferases/genetics,metabolism Mice Molecular Sequence Data Nuclear Proteins/metabolism Phosphoproteins/genetics,metabolism Plasmids/genetics Promoter Regions, Genetic/genetics Protein Binding Recombinant Fusion Proteins/genetics,metabolism Regulatory Sequences, Nucleic Acid/genetics,physiology Transcription Factors/genetics,metabolism,physiology Transcription, Genetic Tumor Cells, Cultured
Chemicals
Basic Helix-Loop-Helix Leucine Zipper Transcription Factors CCAAT-Enhancer-Binding Protein-alpha DNA-Binding Proteins Foxa1 protein, mouse Glucocorticoids Hepatocyte Nuclear Factor 1-alpha Hepatocyte Nuclear Factor 3-alpha Hepatocyte Nuclear Factor 4 Hnf1a protein, mouse Hnf1b protein, mouse Nuclear Proteins Phosphoproteins Recombinant Fusion Proteins Tcfl4 protein, mouse Transcription Factors Hepatocyte Nuclear Factor 1 Hepatocyte Nuclear Factor 1-beta Dexamethasone Luciferases Chloramphenicol O-Acetyltransferase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Bailly A
Unité de Génétique de la Différenciation, FRE 2364 du CNRS, Institut Pasteur, 25 Rue du Dr Roux, 75724 Paris Cedex 15, France.
Torres-Padilla M E
Tinel A P
Weiss M C
References (62)
62 references, click to expand
  1. Firefly luciferase gene: structure and expression in mammalian cells.
    Mol Cell Biol. 1987 Feb;7(2):725-37 PMID: 3821727
  2. LONG-TERM CULTIVATION OF HYPODIPLOID HUMAN TUMOR CELLS.
    J Natl Cancer Inst. 1964 Jan;32:135-63 PMID: 14114965
  3. Factors involved in control of tissue-specific expression of albumin gene.
    Cell. 1987 Aug 14;50(4):627-38 PMID: 3607880
  4. A liver-specific factor essential for albumin transcription differs between differentiated and dedifferentiated rat hepatoma cells.
    Genes Dev. 1988 Aug;2(8):957-74 PMID: 3169549
  5. A simple phase-extraction assay for chloramphenicol acyltransferase activity.
    Gene. 1988 Jul 30;67(2):271-7 PMID: 3169576
  6. Multiple hepatocyte-enriched nuclear factors function in the regulation of transthyretin and alpha 1-antitrypsin genes.
    Mol Cell Biol. 1989 Apr;9(4):1415-25 PMID: 2786140
  7. Tissue-specific expression, developmental regulation, and genetic mapping of the gene encoding CCAAT/enhancer binding protein.
    Genes Dev. 1989 Aug;3(8):1146-56 PMID: 2792758
  8. Involvement of STAT5 (signal transducer and activator of transcription 5) and HNF-4 (hepatocyte nuclear factor 4) in the transcriptional control of the hnf6 gene by growth hormone.
    Mol Endocrinol. 2000 Feb;14(2):285-94 PMID: 10674400
  9. Mammalian hepatocyte differentiation requires the transcription factor HNF-4alpha.
    Genes Dev. 2000 Feb 15;14(4):464-74 PMID: 10691738
  10. CCAAT/enhancer-binding protein-alpha is a component of the growth hormone-regulated network of liver transcription factors.
    Endocrinology. 2000 May;141(5):1686-92 PMID: 10803577
  11. The gene for hepatocyte nuclear factor (HNF)-4alpha is activated by glucocorticoids and glucagon, and repressed by insulin in rat liver.
    FEBS Lett. 2000 Jul 28;478(1-2):141-6 PMID: 10922486
  12. A quantitative comparison of formation of spontaneous and virus-produced viable hybrids.
    Proc Natl Acad Sci U S A. 1969 Mar;62(3):852-9 PMID: 4308097
  13. Characterization of differentiated and dedifferentiated clones from a rat hepatoma.
    Biochimie. 1974;56(11-12):1603-11 PMID: 4157008
  14. CCAAT/enhancer binding protein activates the promoter of the serum albumin gene in cultured hepatoma cells.
    Genes Dev. 1989 Sep;3(9):1314-22 PMID: 2558052
  15. A distal dimerization domain is essential for DNA-binding by the atypical HNF1 homeodomain.
    Nucleic Acids Res. 1990 Oct 11;18(19):5853-63 PMID: 2216777
  16. Liver-enriched transcription factor HNF-4 is a novel member of the steroid hormone receptor superfamily.
    Genes Dev. 1990 Dec;4(12B):2353-65 PMID: 2279702
  17. CCAAT/enhancer binding protein gene promoter: binding of nuclear factors during differentiation of 3T3-L1 preadipocytes.
    Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2593-7 PMID: 2006196
  18. Cell-type specific activity of two glucocorticoid responsive units of rat tyrosine aminotransferase gene is associated with multiple binding sites for C/EBP and a novel liver-specific nuclear factor.
    Nucleic Acids Res. 1991 Jan 11;19(1):131-9 PMID: 1672737
  19. An exogenous albumin promoter can become silent in dedifferentiated hepatoma variants as well as intertypic hybrids.
    Cell Growth Differ. 1990 Nov;1(11):519-26 PMID: 2128461
  20. vHNF1 is a homeoprotein that activates transcription and forms heterodimers with HNF1.
    EMBO J. 1991 Jun;10(6):1445-57 PMID: 1673926
  21. Tissue-specific expression of the gene encoding hepatocyte nuclear factor 1 may involve hepatocyte nuclear factor 4.
    Genes Dev. 1991 Dec;5(12A):2225-34 PMID: 1748280
  22. The restricted promoter activity of the liver transcription factor hepatocyte nuclear factor 3 beta involves a cell-specific factor and positive autoactivation.
    Mol Cell Biol. 1992 Feb;12(2):552-62 PMID: 1732730
  23. A transcriptional hierarchy involved in mammalian cell-type specification.
    Nature. 1992 Jan 30;355(6359):457-61 PMID: 1734282
  24. Reporter constructs with low background activity utilizing the cat gene.
    Gene. 1992 Jan 2;110(1):129-30 PMID: 1544570
  25. Antagonism between apolipoprotein AI regulatory protein 1, Ear3/COUP-TF, and hepatocyte nuclear factor 4 modulates apolipoprotein CIII gene expression in liver and intestinal cells.
    Mol Cell Biol. 1992 Apr;12(4):1708-18 PMID: 1312668
  26. Activation of the tyrosine aminotransferase gene is dependent on synergy between liver-specific and hormone-responsive elements.
    Proc Natl Acad Sci U S A. 1993 Jun 15;90(12):5479-83 PMID: 8100067
  27. Liver-specific factor binding to the liver promoter of a 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase gene.
    J Biol Chem. 1993 Sep 15;268(26):19896-905 PMID: 8396149
  28. Analysis of the rat hepatocyte nuclear factor (HNF) 1 gene promoter: synergistic activation by HNF4 and HNF1 proteins.
    Nucleic Acids Res. 1993 Aug 11;21(16):3731-6 PMID: 8367288
  29. Elements and factors involved in tissue-specific and embryonic expression of the liver transcription factor LFB1 in Xenopus laevis.
    Mol Cell Biol. 1993 Oct;13(10):6416-26 PMID: 8413240
  30. An indirect negative autoregulatory mechanism involved in hepatocyte nuclear factor-1 gene expression.
    Nucleic Acids Res. 1993 Dec 25;21(25):5882-9 PMID: 8290348
  31. The formation and maintenance of the definitive endoderm lineage in the mouse: involvement of HNF3/forkhead proteins.
    Development. 1993 Dec;119(4):1301-15 PMID: 8306889
  32. Expression of transcription factor HNF-4 in the extraembryonic endoderm, gut, and nephrogenic tissue of the developing mouse embryo: HNF-4 is a marker for primary endoderm in the implanting blastocyst.
    Proc Natl Acad Sci U S A. 1994 Aug 2;91(16):7598-602 PMID: 8052626
  33. HNF-3 beta is essential for node and notochord formation in mouse development.
    Cell. 1994 Aug 26;78(4):561-74 PMID: 8069909
  34. The winged-helix transcription factor HNF-3 beta is required for notochord development in the mouse embryo.
    Cell. 1994 Aug 26;78(4):575-88 PMID: 8069910
  35. Genetic analysis of a transcriptional activation pathway by using hepatoma cell variants.
    Mol Cell Biol. 1994 Nov;14(11):7086-94 PMID: 7935424
  36. Tissue-specific regulation of mouse hepatocyte nuclear factor 4 expression.
    Mol Cell Biol. 1994 Nov;14(11):7276-84 PMID: 7523862
  37. Disruption of the HNF-4 gene, expressed in visceral endoderm, leads to cell death in embryonic ectoderm and impaired gastrulation of mouse embryos.
    Genes Dev. 1994 Oct 15;8(20):2466-77 PMID: 7958910
  38. The orphan receptors COUP-TF and HNF-4 serve as accessory factors required for induction of phosphoenolpyruvate carboxykinase gene transcription by glucocorticoids.
    Proc Natl Acad Sci U S A. 1995 Jan 17;92(2):412-6 PMID: 7831301
  39. Characterization of the mouse HNF-4 gene and its expression during mouse embryogenesis.
    Mech Dev. 1994 Nov;48(2):67-79 PMID: 7873404
  40. Hepatocyte nuclear factor 3 determines the amplitude of the glucocorticoid response of the rat tyrosine aminotransferase gene.
    DNA Cell Biol. 1995 May;14(5):385-96 PMID: 7748488
  41. Liver-enriched transcription factors and hepatocyte differentiation.
    FASEB J. 1996 Feb;10(2):267-82 PMID: 8641560
  42. The activity of the highly inducible mouse phenylalanine hydroxylase gene promoter is dependent upon a tissue-specific, hormone-inducible enhancer.
    Mol Cell Biol. 1996 Jun;16(6):3125-37 PMID: 8649424
  43. The transcriptional activator hepatocyte nuclear factor 6 regulates liver gene expression.
    Mol Cell Biol. 1996 Nov;16(11):6273-84 PMID: 8887657
  44. Hepatocyte nuclear factor-3 alpha promoter regulation involves recognition by cell-specific factors, thyroid transcription factor-1, and autoactivation.
    Cell Growth Differ. 1997 Jan;8(1):69-82 PMID: 8993836
  45. Murine gastrulation requires HNF-4 regulated gene expression in the visceral endoderm: tetraploid rescue of Hnf-4(-/-) embryos.
    Development. 1997 Jan;124(2):279-87 PMID: 9053305
  46. Analysis of the distribution of binding sites for a tissue-specific transcription factor in the vertebrate genome.
    J Mol Biol. 1997 Feb 21;266(2):231-45 PMID: 9047360
  47. Hepatocyte nuclear factor 4 expression overcomes repression of the hepatic phenotype in dedifferentiated hepatoma cells.
    Mol Cell Biol. 1997 Apr;17(4):1913-22 PMID: 9121439
  48. Hepatocyte nuclear factor-4 prevents silencing of hepatocyte nuclear factor-1 expression in hepatoma x fibroblast cell hybrids.
    Nucleic Acids Res. 1997 Jun 15;25(12):2501-8 PMID: 9171105
  49. Selective loss of the hepatic phenotype due to the absence of a transcriptional activation pathway.
    Somat Cell Mol Genet. 1997 May;23(3):185-201 PMID: 9330630
  50. The maturity-onset diabetes of the young (MODY1) transcription factor HNF4alpha regulates expression of genes required for glucose transport and metabolism.
    Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13209-14 PMID: 9371825
  51. An alternative splice variant of the tissue specific transcription factor HNF4alpha predominates in undifferentiated murine cell types.
    Nucleic Acids Res. 1998 Jan 15;26(2):497-504 PMID: 9421506
  52. The cut-homeodomain transcriptional activator HNF-6 is coexpressed with its target gene HNF-3 beta in the developing murine liver and pancreas.
    Dev Biol. 1997 Dec 15;192(2):228-46 PMID: 9441664
  53. HNF-6 is expressed in endoderm derivatives and nervous system of the mouse embryo and participates to the cross-regulatory network of liver-enriched transcription factors.
    Dev Biol. 1997 Dec 15;192(2):247-57 PMID: 9441665
  54. Isoforms of hepatocyte nuclear factor-6 differ in DNA-binding properties, contain a bifunctional homeodomain, and define the new ONECUT class of homeodomain proteins.
    J Biol Chem. 1998 May 29;273(22):13552-62 PMID: 9593691
  55. Phenotypic effects of the forced expression of HNF4 and HNF1alpha are conditioned by properties of the recipient cell.
    J Cell Sci. 1998 Aug;111 ( Pt 16):2411-21 PMID: 9683635
  56. Regulation of a transcription factor network required for differentiation and metabolism.
    Science. 1998 Jul 31;281(5377):692-5 PMID: 9685261
  57. Hepatocyte nuclear factor 6: organization and chromosomal assignment of the rat gene and characterization of its promoter.
    Biochem J. 1998 Sep 15;334 ( Pt 3):565-9 PMID: 9729463
  58. C/EBPalpha regulates generation of C/EBPbeta isoforms through activation of specific proteolytic cleavage.
    Mol Cell Biol. 1999 Mar;19(3):1695-704 PMID: 10022857
  59. Modulation of transcriptional activation and coactivator interaction by a splicing variation in the F domain of nuclear receptor hepatocyte nuclear factor 4alpha1.
    Mol Cell Biol. 1999 Oct;19(10):6509-22 PMID: 10490591
  60. Essential role for the homeoprotein vHNF1/HNF1beta in visceral endoderm differentiation.
    Development. 1999 Nov;126(21):4785-94 PMID: 10518495
  61. Variant hepatocyte nuclear factor 1 is required for visceral endoderm specification.
    Development. 1999 Nov;126(21):4795-805 PMID: 10518496
  62. Cooperativity of glucocorticoid response elements located far upstream of the tyrosine aminotransferase gene.
    Cell. 1987 Apr 10;49(1):29-38 PMID: 2881624
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2001-09-01
Pages
3495-505
Language
English
Region
England
NLM ID
0411011
PMCID
PMC55877
Subset
IM
Databases
GENBANK
AF320052
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]