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PMID: 15126389 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Yeast MPH1 gene functions in an error-free DNA damage bypass pathway that requires genes from Homologous recombination, but not from postreplicative repair.

Genetics ·Vol. 166 ·No. 4 ·2004-04-00 ·Pages 1673-86

Schürer KA, Rudolph C, Ulrich HD, Kramer W

Abstract

The MPH1 gene from Saccharomyces cerevisiae, encoding a member of the DEAH family of proteins, had been identified by virtue of the spontaneous mutator phenotype of respective deletion mutants. Genetic analysis suggested that MPH1 functions in a previously uncharacterized DNA repair pathway that protects the cells from damage-induced mutations. We have now analyzed genetic interactions of mph1 with a variety of mutants from different repair systems with respect to spontaneous mutation rates and sensitivities to different DNA-damaging agents. The dependence of the mph1 mutator phenotype on REV3 and REV1 and the synergy with mutations in base and nucleotide excision repair suggest an involvement of MPH1 in error-free bypass of lesions. However, although we observed an unexpected partial suppression of the mph1 mutator phenotype by rad5, genetic interactions with other mutations in postreplicative repair imply that MPH1 does not belong to this pathway. Instead, mutations from the homologous recombination pathway were found to be epistatic to mph1 with respect to both spontaneous mutation rates and damage sensitivities. Determination of spontaneous mitotic recombination rates demonstrated that mph1 mutants are not deficient in homologous recombination. On the contrary, in an sgs1 background we found a pronounced hyperrecombination phenotype. Thus, we propose that MPH1 is involved in a branch of homologous recombination that is specifically dedicated to error-free bypass.

MeSH Terms
4-Nitroquinoline-1-oxide Culture Media DEAD-box RNA Helicases DNA Damage/physiology Genes, Fungal/genetics Genotype Methyl Methanesulfonate Mutation/genetics Plasmids/genetics Quinolones RNA Helicases/physiology Recombination, Genetic/genetics Saccharomyces cerevisiae/genetics,physiology Saccharomyces cerevisiae Proteins/physiology
Chemicals
4-nitroquinolone-1-oxide Culture Media Quinolones Saccharomyces cerevisiae Proteins 4-Nitroquinoline-1-oxide Methyl Methanesulfonate MPH1 protein, S cerevisiae DEAD-box RNA Helicases RNA Helicases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Schürer K Anke
Department of Molecular Genetics and Preparative Molecular Biology, Institute for Microbiology and Genetics, University of Göttingen, D-37077 Göttingen, Germany.
Rudolph Christian
Ulrich Helle D
Kramer Wilfried
References (77)
77 references, click to expand
  1. Recombinational DNA repair of damaged replication forks in Escherichia coli: questions.
    Annu Rev Genet. 2001;35:53-82 PMID: 11700277
  2. Dissection of the functions of the Saccharomyces cerevisiae RAD6 postreplicative repair group in mutagenesis and UV sensitivity.
    Genetics. 2001 Nov;159(3):953-63 PMID: 11729144
  3. Suppression of genetic defects within the RAD6 pathway by srs2 is specific for error-free post-replication repair but not for damage-induced mutagenesis.
    Nucleic Acids Res. 2002 Feb 1;30(3):732-9 PMID: 11809886
  4. Saccharomyces cerevisiae MGS1 is essential in strains deficient in the RAD6-dependent DNA damage tolerance pathway.
    EMBO J. 2002 Apr 15;21(8):2019-29 PMID: 11953321
  5. Low fidelity DNA synthesis by a y family DNA polymerase due to misalignment in the active site.
    J Biol Chem. 2002 May 31;277(22):19633-8 PMID: 11919199
  6. Specialized DNA polymerases, cellular survival, and the genesis of mutations.
    Science. 2002 May 31;296(5573):1627-30 PMID: 12040171
  7. Error-prone repair DNA polymerases in prokaryotes and eukaryotes.
    Annu Rev Biochem. 2002;71:17-50 PMID: 12045089
  8. The bacterial RecA protein and the recombinational DNA repair of stalled replication forks.
    Annu Rev Biochem. 2002;71:71-100 PMID: 12045091
  9. Active site tightness and substrate fit in DNA replication.
    Annu Rev Biochem. 2002;71:191-219 PMID: 12045095
  10. Genome stability and the processing of damaged replication forks by RecG.
    Trends Genet. 2002 Aug;18(8):413-9 PMID: 12142010
  11. Initiation of eukaryotic DNA replication: regulation and mechanisms.
    Prog Nucleic Acid Res Mol Biol. 2002;72:41-94 PMID: 12206458
  12. The product of Saccharomyces cerevisiae WHIP/MGS1, a gene related to replication factor C genes, interacts functionally with DNA polymerase delta.
    Mol Genet Genomics. 2002 Nov;268(3):371-86 PMID: 12436259
  13. The roles of REV3 and RAD57 in double-strand-break-repair-induced mutagenesis of Saccharomyces cerevisiae.
    Genetics. 2002 Nov;162(3):1063-77 PMID: 12454056
  14. The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis.
    J Bacteriol. 1989 Jan;171(1):230-7 PMID: 2492497
  15. REV3, a Saccharomyces cerevisiae gene whose function is required for induced mutagenesis, is predicted to encode a nonessential DNA polymerase.
    J Bacteriol. 1989 Oct;171(10):5659-67 PMID: 2676986
  16. The SRS2 suppressor of rad6 mutations of Saccharomyces cerevisiae acts by channeling DNA lesions into the RAD52 DNA repair pathway.
    Genetics. 1990 Apr;124(4):817-31 PMID: 2182387
  17. Yeast structural gene (APN1) for the major apurinic endonuclease: homology to Escherichia coli endonuclease IV.
    Proc Natl Acad Sci U S A. 1990 Jun;87(11):4193-7 PMID: 1693433
  18. Distinct roles for Rev1p and Rev7p during translesion synthesis in Saccharomyces cerevisiae.
    Mol Microbiol. 1999 Oct;34(1):124-33 PMID: 10540291
  19. Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach.
    Mol Gen Genet. 1999 Dec;262(4-5):683-702 PMID: 10628851
  20. Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase eta.
    Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3094-9 PMID: 10725365
  21. The polymerase inhibition assay: A methodology for the identification of DNA-damaging agents.
    Mol Carcinog. 2000 Apr;27(4):289-97 PMID: 10747293
  22. Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression.
    Cell. 2000 Mar 31;101(1):35-45 PMID: 10778854
  23. UBC13, a DNA-damage-inducible gene, is a member of the error-free postreplication repair pathway in Saccharomyces cerevisiae.
    Curr Genet. 2000 Mar;37(3):168-74 PMID: 10794173
  24. Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair.
    EMBO J. 2000 Jul 3;19(13):3388-97 PMID: 10880451
  25. MPH1, a yeast gene encoding a DEAH protein, plays a role in protection of the genome from spontaneous and chemically induced damage.
    Genetics. 2000 Jul;155(3):1069-81 PMID: 10880470
  26. The Saccharomyces cerevisiae RAD6 group is composed of an error-prone and two error-free postreplication repair pathways.
    Genetics. 2000 Aug;155(4):1633-41 PMID: 10924462
  27. Evidence for a second function for Saccharomyces cerevisiae Rev1p.
    Mol Microbiol. 2000 Aug;37(3):549-54 PMID: 10931348
  28. Efficient and accurate replication in the presence of 7,8-dihydro-8-oxoguanine by DNA polymerase eta.
    Nat Genet. 2000 Aug;25(4):458-61 PMID: 10932195
  29. Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions.
    Nature. 2000 Aug 31;406(6799):1015-9 PMID: 10984059
  30. Replication past O(6)-methylguanine by yeast and human DNA polymerase eta.
    Mol Cell Biol. 2000 Nov;20(21):8001-7 PMID: 11027270
  31. SGS1, the Saccharomyces cerevisiae homologue of BLM and WRN, suppresses genome instability and homeologous recombination.
    Nat Genet. 2001 Jan;27(1):113-6 PMID: 11138010
  32. Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites.
    Genes Dev. 2001 Apr 15;15(8):945-54 PMID: 11316789
  33. Targeting, disruption, replacement, and allele rescue: integrative DNA transformation in yeast.
    Methods Enzymol. 1991;194:281-301 PMID: 2005793
  34. In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast.
    Methods Enzymol. 1991;194:302-18 PMID: 2005795
  35. Cellular role of yeast Apn1 apurinic endonuclease/3'-diesterase: repair of oxidative and alkylation DNA damage and control of spontaneous mutation.
    Mol Cell Biol. 1991 Sep;11(9):4537-44 PMID: 1715020
  36. A polymerase chain reaction-based method to detect cisplatin adducts in specific genes.
    Nucleic Acids Res. 1991 Nov 25;19(22):6209-14 PMID: 1956780
  37. Improved method for high efficiency transformation of intact yeast cells.
    Nucleic Acids Res. 1992 Mar 25;20(6):1425 PMID: 1561104
  38. Saccharomyces cerevisiae RAD5-encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome.
    Mol Cell Biol. 1992 Sep;12(9):3807-18 PMID: 1324406
  39. A putative homologue of the human autoantigen Ku from Saccharomyces cerevisiae.
    J Biol Chem. 1993 Jun 15;268(17):12895-900 PMID: 8509423
  40. Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli.
    J Biol Chem. 1993 Nov 15;268(32):23762-5 PMID: 8226906
  41. Specific complex formation between yeast RAD6 and RAD18 proteins: a potential mechanism for targeting RAD6 ubiquitin-conjugating activity to DNA damage sites.
    Genes Dev. 1994 Apr 1;8(7):811-20 PMID: 7926769
  42. DNA adducts of heterocyclic aromatic amines, arylazides and 4-nitroquinoline 1-oxide.
    IARC Sci Publ. 1994;(125):217-28 PMID: 7806314
  43. New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae.
    Yeast. 1994 Dec;10(13):1793-808 PMID: 7747518
  44. Differential replication of a single, UV-induced lesion in the leading or lagging strand by a human cell extract: fork uncoupling or gap formation.
    Proc Natl Acad Sci U S A. 1995 Dec 19;92(26):11975-9 PMID: 8618826
  45. Thymine-thymine dimer bypass by yeast DNA polymerase zeta.
    Science. 1996 Jun 14;272(5268):1646-9 PMID: 8658138
  46. Deoxycytidyl transferase activity of yeast REV1 protein.
    Nature. 1996 Aug 22;382(6593):729-31 PMID: 8751446
  47. Requirement of proliferating cell nuclear antigen in RAD6-dependent postreplicational DNA repair.
    Proc Natl Acad Sci U S A. 1996 Sep 3;93(18):9676-81 PMID: 8790390
  48. HDF2, the second subunit of the Ku homologue from Saccharomyces cerevisiae.
    J Biol Chem. 1996 Nov 1;271(44):27765-9 PMID: 8910371
  49. SGS1, a homologue of the Bloom's and Werner's syndrome genes, is required for maintenance of genome stability in Saccharomyces cerevisiae.
    Genetics. 1996 Nov;144(3):935-45 PMID: 8913739
  50. Heterologous HIS3 marker and GFP reporter modules for PCR-targeting in Saccharomyces cerevisiae.
    Yeast. 1997 Sep 15;13(11):1065-75 PMID: 9290211
  51. Identification of Saccharomyces cerevisiae DNA ligase IV: involvement in DNA double-strand break repair.
    EMBO J. 1997 Aug 1;16(15):4788-95 PMID: 9303323
  52. The Saccharomyces cerevisiae RAD30 gene, a homologue of Escherichia coli dinB and umuC, is DNA damage inducible and functions in a novel error-free postreplication repair mechanism.
    Genetics. 1997 Dec;147(4):1557-68 PMID: 9409821
  53. MMS2, encoding a ubiquitin-conjugating-enzyme-like protein, is a member of the yeast error-free postreplication repair pathway.
    Proc Natl Acad Sci U S A. 1998 May 12;95(10):5678-83 PMID: 9576943
  54. Identification of APN2, the Saccharomyces cerevisiae homolog of the major human AP endonuclease HAP1, and its role in the repair of abasic sites.
    Genes Dev. 1998 Oct 1;12(19):3137-43 PMID: 9765213
  55. Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Poleta.
    Science. 1999 Feb 12;283(5404):1001-4 PMID: 9974380
  56. RPD3 (REC3) mutations affect mitotic recombination in Saccharomyces cerevisiae.
    Curr Genet. 1999 Mar;35(2):68-76 PMID: 10079324
  57. Analysis of DNA replication forks encountering a pyrimidine dimer in the template to the leading strand.
    J Mol Biol. 1999 Jun 25;289(5):1207-18 PMID: 10373362
  58. Translesion synthesis by the UmuC family of DNA polymerases.
    Mutat Res. 2001 Jul 12;486(2):59-70 PMID: 11425512
  59. Feedback controls restrain the initiation of Escherichia coli chromosomal replication.
    Mol Microbiol. 2001 Jul;41(1):9-17 PMID: 11454196
  60. Rescue of arrested replication forks by homologous recombination.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8181-8 PMID: 11459951
  61. RecA protein promotes the regression of stalled replication forks in vitro.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8211-8 PMID: 11459955
  62. A yeast gene, MGS1, encoding a DNA-dependent AAA(+) ATPase is required to maintain genome stability.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8283-9 PMID: 11459965
  63. The srs2 suppressor of UV sensitivity acts specifically on the RAD5- and MMS2-dependent branch of the RAD6 pathway.
    Nucleic Acids Res. 2001 Sep 1;29(17):3487-94 PMID: 11522817
  64. Translesion synthesis past acrolein-derived DNA adduct, gamma -hydroxypropanodeoxyguanosine, by yeast and human DNA polymerase eta.
    J Biol Chem. 2003 Jan 10;278(2):784-90 PMID: 12401796
  65. Yeast DNA polymerase zeta is an efficient extender of primer ends opposite from 7,8-dihydro-8-Oxoguanine and O6-methylguanine.
    Mol Cell Biol. 2003 Feb;23(4):1453-9 PMID: 12556503
  66. DNA helicase Srs2 disrupts the Rad51 presynaptic filament.
    Nature. 2003 May 15;423(6937):305-9 PMID: 12748644
  67. The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments.
    Nature. 2003 May 15;423(6937):309-12 PMID: 12748645
  68. Uncoupling of leading- and lagging-strand DNA replication during lesion bypass in vivo.
    Science. 2003 May 23;300(5623):1300-3 PMID: 12764199
  69. A model for replication repair in mammalian cells.
    J Mol Biol. 1976 Mar 5;101(3):417-25 PMID: 1255724
  70. Replicative bypass repair of ultraviolet damage to DNA of mammalian cells: caffeine sensitive and caffeine resistant mechanisms.
    Mutat Res. 1976 Oct;37(1):91-110 PMID: 967189
  71. Ultraviolet-induced reversion of cyc1 alleles in radiation sensitive strains of yeast. II. rev2 mutant strains.
    Genetics. 1978 Oct;90(2):213-26 PMID: 365677
  72. The origin of spontaneous mutation in Saccharomyces cerevisiae.
    Genetics. 1980 Dec;96(4):819-39 PMID: 7021317
  73. Methylation of the O6 position of guanine in DNA is the most likely initiating event in carcinogenesis by methylating agents.
    Cancer Invest. 1984;2(3):223-31 PMID: 6733565
  74. Browning reaction systems as sources of mutagens and antimutagens.
    Environ Health Perspect. 1986 Aug;67:47-54 PMID: 3757959
  75. A method for gene disruption that allows repeated use of URA3 selection in the construction of multiply disrupted yeast strains.
    Genetics. 1987 Aug;116(4):541-5 PMID: 3305158
  76. Characterization of null mutants of the RAD55 gene of Saccharomyces cerevisiae: effects of temperature, osmotic strength and mating type.
    Genetics. 1987 Aug;116(4):547-53 PMID: 3305159
  77. Error-prone DNA polymerases: novel structures and the benefits of infidelity.
    Cell. 2001 Oct 5;107(1):9-12 PMID: 11595180
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
2004-04-00
Pages
1673-86
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1470801
Subset
IM
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