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PMID: 2492497 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

The REV1 gene of Saccharomyces cerevisiae: isolation, sequence, and functional analysis.

Journal of bacteriology ·Vol. 171 ·No. 1 ·1989-01-00 ·Pages 230-7

Larimer FW, Perry JR, Hardigree AA

Abstract

The REV1 gene of Saccharomyces cerevisiae is required for normal induction of mutations by physical and chemical agents. We have determined the sequence of a 3,485-base-pair segment of DNA that complements the rev1-1 mutant. Gene disruption was used to confirm that this DNA contained the REV1 gene. The sequenced segment contains a single long open reading frame, which can encode a polypeptide of 985 amino acid residues. The REV1 transcript is 3.1 kilobase pairs in length. Frameshift mutations introduced into the open reading frame yielded a Rev-phenotype. A base substitution, encoding Gly-193 to Arg-193, was found in this open reading frame in rev1-1. Deletion mutants, lacking segments of the 5' region of REV1, had intermediate mutability relative to REV1 and rev1-1; a complete deletion exhibited lower mutability than rev1-1. REV1 is not an essential gene. An in-frame fusion of the 5' end of the REV1 open reading frame to the lacZ gene produced beta-galactosidase activity constitutively. The predicted REV1 protein is hydrophilic, with a predicted pI of 9.82. No homologies to RAD1, RAD2, RAD3, RAD7, or RAD10 proteins were noted. A 152-residue internal segment displayed 25% identity with UMUC protein.

MeSH Terms
4-Nitroquinoline-1-oxide/pharmacology Amino Acid Sequence Base Sequence Cosmids DNA, Fungal/genetics,isolation & purification Genes, Fungal Hot Temperature Molecular Sequence Data Mutation Restriction Mapping Saccharomyces cerevisiae/drug effects,genetics,radiation effects Transcription, Genetic Ultraviolet Rays beta-Galactosidase/genetics
Chemicals
DNA, Fungal 4-Nitroquinoline-1-oxide beta-Galactosidase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Larimer F W
Biology Division, Oak Ridge National Laboratory, Tennessee 37831.
Perry J R
Hardigree A A
References (50)
50 references, click to expand
  1. DNA repair genes of Saccharomyces cerevisiae: complementing rad4 and rev2 mutations by plasmids which cannot be propagated in Escherichia coli.
    Curr Genet. 1986;11(3):205-10 PMID: 3329049
  2. Rapid alkaline preparation for yeast circular covalently closed DNA molecules.
    Curr Genet. 1985;9(2):123-6 PMID: 3916718
  3. Sequence and structural features associated with translational initiator regions in yeast--a review.
    Gene. 1987;59(1):1-18 PMID: 3325335
  4. Mutagenesis in Saccharomyces cerevisiae.
    Adv Genet. 1982;21:173-254 PMID: 7036692
  5. The isolation and characterization of ngm2, a mutation that affects nitrosoguanidine mutagenesis in yeast.
    Mol Gen Genet. 1986 Jul;204(1):90-7 PMID: 3528759
  6. Cloning of Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc8-1 mutation.
    Mol Cell Biol. 1983 Oct;3(10):1730-7 PMID: 6358860
  7. Molecular characterization of cell cycle gene CDC7 from Saccharomyces cerevisiae.
    Mol Cell Biol. 1986 May;6(5):1590-8 PMID: 3537706
  8. Nucleotide sequence and functional analysis of the RAD1 gene of Saccharomyces cerevisiae.
    Mol Cell Biol. 1987 Mar;7(3):1012-20 PMID: 3550428
  9. Differential regulation of the yeast CDC7 gene during mitosis and meiosis.
    Mol Cell Biol. 1988 Jan;8(1):293-300 PMID: 3275871
  10. Beta-galactosidase gene fusions for analyzing gene expression in escherichia coli and yeast.
    Methods Enzymol. 1983;100:293-308 PMID: 6312261
  11. A small cosmid for efficient cloning of large DNA fragments.
    Gene. 1980 Nov;11(3-4):291-8 PMID: 6260575
  12. REV7, a new gene concerned with UV mutagenesis in yeast.
    Mol Gen Genet. 1985;200(1):80-5 PMID: 3897794
  13. RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products.
    Mol Cell Biol. 1986 May;6(5):1497-507 PMID: 3023893
  14. The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme.
    Nature. 1987 Sep 10-16;329(6135):131-4 PMID: 3306404
  15. A yeast protein analogous to Escherichia coli RecA protein whose cellular level is enhanced after UV irradiation.
    Mol Gen Genet. 1985;201(1):20-4 PMID: 3903433
  16. UV-induced reversion of his4 frameshift mutations in rad6, rev1, and rev3 mutants of yeast.
    Mol Gen Genet. 1984;195(3):487-90 PMID: 6381967
  17. Specific Saccharomyces cerevisiae genes are expressed in response to DNA-damaging agents.
    Mol Cell Biol. 1985 Jan;5(1):75-84 PMID: 3920512
  18. Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast.
    Proc Natl Acad Sci U S A. 1985 Dec;82(24):8419-23 PMID: 3909145
  19. Rapid and sensitive protein similarity searches.
    Science. 1985 Mar 22;227(4693):1435-41 PMID: 2983426
  20. Regulation of RAD54- and RAD52-lacZ gene fusions in Saccharomyces cerevisiae in response to DNA damage.
    Mol Cell Biol. 1987 Mar;7(3):1078-84 PMID: 3550429
  21. Regulation of CDC9, the Saccharomyces cerevisiae gene that encodes DNA ligase.
    Mol Cell Biol. 1985 Jan;5(1):226-35 PMID: 3885010
  22. Organisation and sequences at the 5' end of a cloned complete ovalbumin gene.
    Nature. 1979 Mar 29;278(5703):428-34 PMID: 450048
  23. Identification of the yeast DNA sequences that correspond to specific tyrosine-inserting nonsense suppressor loci.
    J Mol Biol. 1979 Aug 15;132(3):387-410 PMID: 533897
  24. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  25. The making of strand-specific M13 probes.
    Gene. 1982 Mar;17(3):271-7 PMID: 7049837
  26. Genetic and physiological factors affecting repair and mutagenesis in yeast.
    Basic Life Sci. 1980;15:85-120 PMID: 7011312
  27. Expression of the RAD1 and RAD3 genes of Saccharomyces cerevisiae is not affected by DNA damage or during the cell division cycle.
    Mol Gen Genet. 1985;199(1):59-63 PMID: 3923299
  28. Location of DNA methylation genes on the Escherichia coli K-12 genetic map.
    Mol Gen Genet. 1973 Dec 14;127(1):47-55 PMID: 4589344
  29. One-step gene disruption in yeast.
    Methods Enzymol. 1983;101:202-11 PMID: 6310324
  30. A consensus transcription termination sequence in the promoter region is necessary for efficient gene expression of the TRP1 gene of Saccharomyces cerevisiae.
    Mol Gen Genet. 1988 Jun;212(3):495-504 PMID: 3047551
  31. Codon selection in yeast.
    J Biol Chem. 1982 Mar 25;257(6):3026-31 PMID: 7037777
  32. Mutagenesis and inducible responses to deoxyribonucleic acid damage in Escherichia coli.
    Microbiol Rev. 1984 Mar;48(1):60-93 PMID: 6371470
  33. Lambdoid phages that simplify the recovery of in vitro recombinants.
    Mol Gen Genet. 1977 Jan 7;150(1):53-61 PMID: 319344
  34. RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation.
    Mol Cell Biol. 1985 Jan;5(1):17-26 PMID: 3885009
  35. A yeast excision-repair gene is inducible by DNA damaging agents.
    Proc Natl Acad Sci U S A. 1986 Mar;83(6):1842-6 PMID: 3081903
  36. UV and chemical mutagenesis in rev7 mutants of yeast.
    Mol Gen Genet. 1985;200(1):86-91 PMID: 3897795
  37. umuDC and mucAB operons whose products are required for UV light- and chemical-induced mutagenesis: UmuD, MucA, and LexA proteins share homology.
    Proc Natl Acad Sci U S A. 1985 Jul;82(13):4331-5 PMID: 2989816
  38. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  39. Nucleotide sequence of the RAD10 gene of Saccharomyces cerevisiae.
    EMBO J. 1985 Dec 16;4(13A):3549-52 PMID: 3912171
  40. Mutants of yeast defective in mutation induced by ultraviolet light.
    Genetics. 1971 May;68(1):21-33 PMID: 17248528
  41. Specific transcripts are elevated in Saccharomyces cerevisiae in response to DNA damage.
    Mol Cell Biol. 1984 Nov;4(11):2356-63 PMID: 6440006
  42. Genetic applications of yeast transformation with linear and gapped plasmids.
    Methods Enzymol. 1983;101:228-45 PMID: 6310326
  43. Transformation in yeast: development of a hybrid cloning vector and isolation of the CAN1 gene.
    Gene. 1979 Dec;8(1):121-33 PMID: 395029
  44. The nucleotide sequence of the RAD3 gene of Saccharomyces cerevisiae: a potential adenine nucleotide binding amino acid sequence and a nonessential acidic carboxyl terminal region.
    Nucleic Acids Res. 1985 Apr 11;13(7):2357-72 PMID: 2987851
  45. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase.
    J Biol Chem. 1982 Mar 25;257(6):3018-25 PMID: 6277922
  46. cdc7-1 a temperature sensitive cell-cycle mutant which interferes with induced mutagenesis in Saccharomyces cerevisiae.
    Mol Gen Genet. 1982;186(4):478-81 PMID: 6752657
  47. 3' non-coding region sequences in eukaryotic messenger RNA.
    Nature. 1976 Sep 16;263(5574):211-4 PMID: 822353
  48. Nucleotide sequence, transcript mapping, and regulation of the RAD2 gene of Saccharomyces cerevisiae.
    J Bacteriol. 1986 Jun;166(3):914-23 PMID: 3011752
  49. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  50. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1989-01-00
Pages
230-7
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC209577
Subset
IM
Databases
GENBANK
M22222
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