Home LiteratureArticle Details
PMID: 3023893 Published · ppublish English Comparative Study Journal Article Research Support, U.S. Gov't, P.H.S.

RAD7 gene of Saccharomyces cerevisiae: transcripts, nucleotide sequence analysis, and functional relationship between the RAD7 and RAD23 gene products.

Molecular and cellular biology ·Vol. 6 ·No. 5 ·1986-05-00 ·Pages 1497-507

Perozzi G, Prakash S

Abstract

The RAD7 gene of Saccharomyces cerevisiae was cloned on a 4.0-kilobase (kb) DNA fragment and shown to provide full complementation of a rad7-delta mutant strain. The nucleotide sequence of a 2.2-kb DNA fragment which contains the complete RAD7 gene was determined. Transcription of the RAD7 gene initiates at multiple sites in a region spanning positions -61 to -8 of the DNA sequence. The 1.8-kb RAD7 mRNA encodes a protein of 565 amino acids with a predicted size of 63.7 kilodaltons. The hydropathy profile of the RAD7 protein indicates a highly hydrophilic amino terminus and a very hydrophobic region toward the carboxyl terminus. A RAD7 subclone deleted for the first 99 codons complements the rad7-delta mutation, but not the rad7-delta rad23-delta double mutation, indicating that the RAD23 protein can compensate for the function that is missing in the amino-terminally deleted RAD7 protein. The RAD7 and RAD23 genes in multicopy plasmids do not complement the rad23-delta and rad7-delta mutations, respectively. These observations could mean that although the two proteins might share a common functional domain, they must also perform distinct functions. Alternatively, an interaction between the RAD7 and RAD23 proteins could also account for these observations.

MeSH Terms
Amino Acid Sequence Base Sequence DNA Restriction Enzymes DNA, Fungal/genetics Dose-Response Relationship, Radiation Escherichia coli/genetics Fungal Proteins/genetics Genes, Fungal RNA, Messenger/genetics Saccharomyces cerevisiae/genetics,radiation effects Transcription, Genetic Ultraviolet Rays
Chemicals
DNA, Fungal Fungal Proteins RNA, Messenger DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Perozzi G
Prakash S
References (57)
57 references, click to expand
  1. Replacement of chromosome segments with altered DNA sequences constructed in vitro.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):4951-5 PMID: 388424
  2. The nucleotide sequence of the uvrD gene of E. coli.
    Nucleic Acids Res. 1984 Jul 25;12(14):5789-99 PMID: 6379604
  3. Cloning of Saccharomyces cerevisiae DNA replication genes: isolation of the CDC8 gene and two genes that compensate for the cdc8-1 mutation.
    Mol Cell Biol. 1983 Oct;3(10):1730-7 PMID: 6358860
  4. A DNA repair gene required for the incision of damaged DNA is essential for viability in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1983 Aug;80(15):4818-21 PMID: 6308653
  5. Saccharomyces cerevisiae RAD2 gene: isolation, subcloning, and partial characterization.
    Mol Cell Biol. 1984 Feb;4(2):290-5 PMID: 6366519
  6. DNA sequence required for efficient transcription termination in yeast.
    Cell. 1982 Mar;28(3):563-73 PMID: 6280875
  7. A simple method for displaying the hydropathic character of a protein.
    J Mol Biol. 1982 May 5;157(1):105-32 PMID: 7108955
  8. Isolation and characterization of the RAD3 gene of Saccharomyces cerevisiae and inviability of rad3 deletion mutants.
    Proc Natl Acad Sci U S A. 1983 Sep;80(18):5680-4 PMID: 16593371
  9. A versatile primer for DNA sequencing in the M13mp2 cloning system.
    Gene. 1980 Jun;10(1):69-73 PMID: 6250947
  10. Molecular cloning and characterization of the RAD1 gene of Saccharomyces cerevisiae.
    Gene. 1983 Dec;26(2-3):119-26 PMID: 6368317
  11. A system for shotgun DNA sequencing.
    Nucleic Acids Res. 1981 Jan 24;9(2):309-21 PMID: 6259625
  12. Defective excision of pyrimidine dimers and interstrand DNA crosslinks in rad7 and rad23 mutants of Saccharomyces cerevisiae.
    Mol Gen Genet. 1982;188(2):235-9 PMID: 6759871
  13. A new pair of M13 vectors for selecting either DNA strand of double-digest restriction fragments.
    Gene. 1982 Oct;19(3):269-76 PMID: 6295880
  14. Specific Saccharomyces cerevisiae genes are expressed in response to DNA-damaging agents.
    Mol Cell Biol. 1985 Jan;5(1):75-84 PMID: 3920512
  15. Molecular cloning of the RAD10 gene of Saccharomyces cerevisiae.
    Gene. 1985;34(1):55-61 PMID: 3891515
  16. Yeast promoters: positive and negative elements.
    Cell. 1984 Apr;36(4):799-800 PMID: 6368004
  17. A comparative study on the genes for three porins of the Escherichia coli outer membrane. DNA sequence of the osmoregulated ompC gene.
    J Biol Chem. 1983 Jun 10;258(11):6932-40 PMID: 6304064
  18. Genetics and biosynthesis of cytochrome c.
    Annu Rev Genet. 1971;5:257-96 PMID: 16097658
  19. Three additional genes involved in pyrimidine dimer removal in Saccharomyces cerevisiae: RAD7, RAD14 and MMS19.
    Mol Gen Genet. 1979 Nov;176(3):351-9 PMID: 392238
  20. DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall.
    Cell. 1985 Feb;40(2):359-69 PMID: 3838150
  21. Lethal disruption of the yeast actin gene by integrative DNA transformation.
    Science. 1982 Jul 23;217(4557):371-3 PMID: 7046050
  22. Deletions of the iso-1-cytochrome c and adjacent genes of yeast: discovery of the OSM1 gene controlling osmotic sensitivity.
    Genetics. 1978 Aug;89(4):653-65 PMID: 211068
  23. Factors that affect the initiation of excision-repair in chromatin.
    Nucleic Acids Symp Ser. 1984;(13):109-25 PMID: 6093060
  24. Organisation and sequences at the 5' end of a cloned complete ovalbumin gene.
    Nature. 1979 Mar 29;278(5703):428-34 PMID: 450048
  25. The yeast plasmid 2 mu circle.
    Cell. 1982 Feb;28(2):203-4 PMID: 7037198
  26. Physical analysis of the CYC1-sup4 interval in Saccharomyces cerevisiae.
    Mol Cell Biol. 1981 Mar;1(3):228-36 PMID: 6765599
  27. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  28. Incision and postincision steps of pyrimidine dimer removal in excision-defective mutants of Saccharomyces cerevisiae.
    J Bacteriol. 1981 Nov;148(2):618-23 PMID: 7028721
  29. The making of strand-specific M13 probes.
    Gene. 1982 Mar;17(3):271-7 PMID: 7049837
  30. Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs.
    Nucleic Acids Res. 1984 Jan 25;12(2):857-72 PMID: 6694911
  31. An extensive deletion causing overproduction of yeast iso-2-cytochrome c.
    Cell. 1981 Aug;25(2):409-19 PMID: 6269746
  32. Preferential repair of nuclear matrix associated DNA in xeroderma pigmentosum complementation group C.
    Mutat Res. 1984 Oct;141(2):75-82 PMID: 6493270
  33. Codon selection in yeast.
    J Biol Chem. 1982 Mar 25;257(6):3026-31 PMID: 7037777
  34. RAD3 gene of Saccharomyces cerevisiae: nucleotide sequence of wild-type and mutant alleles, transcript mapping, and aspects of gene regulation.
    Mol Cell Biol. 1985 Jan;5(1):17-26 PMID: 3885009
  35. Transcription maps of polyoma virus-specific RNA: analysis by two-dimensional nuclease S1 gel mapping.
    Methods Enzymol. 1980;65(1):718-49 PMID: 6154876
  36. Position effects in Saccharomyces cerevisiae.
    J Mol Biol. 1981 Nov 5;152(3):569-75 PMID: 7035683
  37. Preliminary characterization of the transcriptional and translational products of the Saccharomyces cerevisiae cell division cycle gene CDC28.
    Mol Cell Biol. 1982 Apr;2(4):412-25 PMID: 6287237
  38. Isolation and characterization of the RAD2 gene of Saccharomyces cerevisiae.
    Gene. 1984 Oct;30(1-3):121-8 PMID: 6392021
  39. Complete nucleotide sequence of phoE, the structural gene for the phosphate limitation inducible outer membrane pore protein of Escherichia coli K12.
    J Mol Biol. 1983 Feb 5;163(4):513-32 PMID: 6341601
  40. Genetic control of excision of Saccharomyces cerevisiae interstrand DNA cross-links induced by psoralen plus near-UV light.
    Mol Cell Biol. 1982 Aug;2(8):939-48 PMID: 6752694
  41. Comparison of initiation of protein synthesis in procaryotes, eucaryotes, and organelles.
    Microbiol Rev. 1983 Mar;47(1):1-45 PMID: 6343825
  42. Nucleotide sequence of the RAD10 gene of Saccharomyces cerevisiae.
    EMBO J. 1985 Dec 16;4(13A):3549-52 PMID: 3912171
  43. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  44. Genetic applications of yeast transformation with linear and gapped plasmids.
    Methods Enzymol. 1983;101:228-45 PMID: 6310326
  45. Sequences of the E. coli uvrC gene and protein.
    Nucleic Acids Res. 1984 Jun 11;12(11):4593-608 PMID: 6330676
  46. Replication and recombination functions associated with the yeast plasmid, 2 mu circle.
    Cell. 1980 Sep;21(2):501-8 PMID: 7407923
  47. Molecular mechanisms of pyrimidine dimer excision in Saccharomyces cerevisiae: incision of ultraviolet-irradiated deoxyribonucleic acid in vivo.
    J Bacteriol. 1981 May;146(2):692-704 PMID: 7012136
  48. The nucleotide sequence of the RAD3 gene of Saccharomyces cerevisiae: a potential adenine nucleotide binding amino acid sequence and a nonessential acidic carboxyl terminal region.
    Nucleic Acids Res. 1985 Apr 11;13(7):2357-72 PMID: 2987851
  49. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  50. The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase.
    J Biol Chem. 1982 Mar 25;257(6):3018-25 PMID: 6277922
  51. 3' non-coding region sequences in eukaryotic messenger RNA.
    Nature. 1976 Sep 16;263(5574):211-4 PMID: 822353
  52. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  53. Delta sequences and double symmetry in a yeast chromosomal replicator region.
    J Mol Biol. 1982 Apr 5;156(2):293-307 PMID: 6283100
  54. Isolation and characterization of MMS-sensitive mutants of Saccharomyces cerevisiae.
    Genetics. 1977 May;86(1):33-55 PMID: 195865
  55. Primary structure of the ompF gene that codes for a major outer membrane protein of Escherichia coli K-12.
    Nucleic Acids Res. 1982 Nov 11;10(21):6957-68 PMID: 6294623
  56. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  57. Molecular cloning and nucleotide sequence analysis of the Saccharomyces cerevisiae RAD1 gene.
    Mol Cell Biol. 1984 Oct;4(10):2161-9 PMID: 6095044
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1986-05-00
Pages
1497-507
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC367675
Subset
IM
Grants
NCI NIH HHS · CA-35035 · United States
NCI NIH HHS · CA-41261 · United States
Databases
GENBANK
M13015
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]