Home LiteratureArticle Details
PMID: 1563043 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Positive cis-acting regulatory sequences mediate proper control of POL1 transcription in Saccharomyces cerevisiae.

Current genetics ·Vol. 21 ·No. 3 ·1992-03-00 ·Pages 183-9

Pizzagalli A, Piatti S, Derossi D, Gander I, Plevani P, Lucchini G

Abstract

The 5'ACGCGT3' MluI motif, which is found in the upstream region of several yeast DNA-synthesis genes which are periodically expressed during the mitotic cell-cycle, is present twice in the 5' non-coding region of the DNA-polymerase alpha gene (POL1). Deletion of the most distal repeat does not affect POL1 transcription, while the adjacent 40 base-pair (bp) downstream sequence is necessary both for the proper level and the fluctuation of POL1 mRNA. This region contains the 5'ACGCGTCGCGT3' sequence, which is sufficient to control periodic transcription of a CYC1-lacZ reporter gene with the same kinetics observed for POL1. The adjacent 29 bp AT-rich region does not show any activity by itself, but it acts synergistically in conjunction with at least one MluI hexamer to stimulate CYC1-lacZ expression. By further deletion analysis, DNA sequences necessary to initiate POL1 transcription at the proper sites have also been identified.

Related Genes
MeSH Terms
Base Sequence Cell Cycle/genetics DNA Mutational Analysis DNA Polymerase I/genetics DNA Polymerase II/genetics Molecular Sequence Data Promoter Regions, Genetic/physiology Regulatory Sequences, Nucleic Acid/physiology Saccharomyces cerevisiae/enzymology,genetics Transcription, Genetic/physiology
Chemicals
DNA Polymerase I DNA Polymerase II
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Pizzagalli A
Dipartimento di Genetica e di Biologia dei Microorganismi, Università di Milano, Italy.
Piatti S
Derossi D
Gander I
Plevani P
Lucchini G
References (48)
48 references, click to expand
  1. FAR-reaching discoveries about the regulation of START.
    Cell. 1990 Dec 21;63(6):1117-20 PMID: 2261635
  2. Induction of yeast DNA ligase genes in exponential and stationary phase cultures in response to DNA damaging agents.
    Curr Genet. 1986;11(2):107-12 PMID: 3329047
  3. Molecular characterization of the cell cycle-regulated thymidylate synthase gene of Saccharomyces cerevisiae.
    J Biol Chem. 1987 Apr 15;262(11):5298-307 PMID: 3031048
  4. Cell cycle-dependent phosphorylation of human DNA polymerase alpha.
    J Biol Chem. 1991 Apr 25;266(12):7893-903 PMID: 1902230
  5. Nucleotide sequence and characterization of temperature-sensitive pol1 mutants of Saccharomyces cerevisiae.
    Gene. 1990 May 31;90(1):99-104 PMID: 2199334
  6. Five SWI genes are required for expression of the HO gene in yeast.
    J Mol Biol. 1984 Oct 5;178(4):853-68 PMID: 6436497
  7. The nucleotide sequence of the DNA ligase gene (CDC9) from Saccharomyces cerevisiae: a gene which is cell-cycle regulated and induced in response to DNA damage.
    Nucleic Acids Res. 1985 Dec 9;13(23):8323-37 PMID: 3909103
  8. Molecular cloning, structure and expression of the yeast proliferating cell nuclear antigen gene.
    Nucleic Acids Res. 1990 Jan 25;18(2):261-5 PMID: 1970160
  9. Expression of the yeast DNA primase gene, PRI1, is regulated within the mitotic cell cycle and in meiosis.
    Mol Gen Genet. 1990 Mar;221(1):44-8 PMID: 2183009
  10. Regulation of cell cycle-dependent gene expression in yeast.
    J Biol Chem. 1990 Aug 25;265(24):14057-60 PMID: 2201678
  11. Gene expression of human DNA polymerase alpha during cell proliferation and the cell cycle.
    Mol Cell Biol. 1988 Nov;8(11):5016-25 PMID: 3211134
  12. A cdc2-like protein is involved in the initiation of DNA replication in Xenopus egg extracts.
    Cell. 1990 Sep 7;62(5):855-62 PMID: 2203536
  13. Characterization of a short, cis-acting DNA sequence which conveys cell cycle stage-dependent transcription in Saccharomyces cerevisiae.
    Mol Cell Biol. 1991 Jan;11(1):329-37 PMID: 1986229
  14. DNA polymerase I gene of Saccharomyces cerevisiae: nucleotide sequence, mapping of a temperature-sensitive mutation, and protein homology with other DNA polymerases.
    Proc Natl Acad Sci U S A. 1988 Jun;85(11):3772-6 PMID: 3287376
  15. Identification of sequences in a yeast histone promoter involved in periodic transcription.
    Cell. 1986 May 23;45(4):537-44 PMID: 3518945
  16. Cell-cycle-regulated phosphorylation of DNA replication factor A from human and yeast cells.
    Genes Dev. 1990 Jun;4(6):968-77 PMID: 2200738
  17. Positive regulatory interactions of the HIS4 gene of Saccharomyces cerevisiae.
    Mol Cell Biol. 1984 Jul;4(7):1326-33 PMID: 6095062
  18. The yeast DNA polymerase I transcript is regulated in both the mitotic cell cycle and in meiosis and is also induced after DNA damage.
    Nucleic Acids Res. 1987 Jul 10;15(13):5017-30 PMID: 3299263
  19. Histone H2B repression causes cell-cycle-specific arrest in yeast: effects on chromosomal segregation, replication, and transcription.
    Cell. 1987 Feb 27;48(4):589-97 PMID: 3815518
  20. Analysis and in vivo disruption of the gene coding for adenylate kinase (ADK1) in the yeast Saccharomyces cerevisiae.
    J Biol Chem. 1988 Dec 25;263(36):19468-74 PMID: 2848829
  21. Sequential initiation of lagging and leading strand synthesis by two different polymerase complexes at the SV40 DNA replication origin.
    Nature. 1990 Aug 9;346(6284):534-9 PMID: 2165567
  22. Mutations in conserved yeast DNA primase domains impair DNA replication in vivo.
    Proc Natl Acad Sci U S A. 1991 May 1;88(9):3877-81 PMID: 2023935
  23. A third essential DNA polymerase in S. cerevisiae.
    Cell. 1990 Sep 21;62(6):1143-51 PMID: 2169349
  24. Yeast DNA polymerase--DNA primase complex; cloning of PRI 1, a single essential gene related to DNA primase activity.
    EMBO J. 1987 Mar;6(3):737-42 PMID: 3034609
  25. Coordination of expression of DNA synthesis genes in budding yeast by a cell-cycle regulated trans factor.
    Nature. 1991 Mar 21;350(6315):247-50 PMID: 2005980
  26. Cell-cycle regulation of yeast histone mRNA.
    Cell. 1981 May;24(2):367-75 PMID: 7016339
  27. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  28. Activation of the yeast HO gene by release from multiple negative controls.
    Cell. 1987 Feb 27;48(4):567-77 PMID: 3545494
  29. At least 1400 base pairs of 5'-flanking DNA is required for the correct expression of the HO gene in yeast.
    Cell. 1985 Aug;42(1):213-23 PMID: 3893741
  30. The nucleotide sequence of the PRI1 gene related to DNA primase in Saccharomyces cerevisiae.
    Nucleic Acids Res. 1987 Oct 12;15(19):7975-89 PMID: 3313275
  31. Cell cycle control of the yeast HO gene: cis- and trans-acting regulators.
    Cell. 1987 Feb 13;48(3):389-97 PMID: 3542227
  32. The amino acid sequence of beta-galactosidase of Escherichia coli.
    Proc Natl Acad Sci U S A. 1977 Apr;74(4):1507-10 PMID: 323855
  33. Identification of a sequence responsible for periodic synthesis of yeast histone 2A mRNA.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7689-93 PMID: 6760202
  34. Primase p49 mRNA expression is serum stimulated but does not vary with the cell cycle.
    Mol Cell Biol. 1989 May;9(5):1940-5 PMID: 2747641
  35. Mechanisms of gene regulation in the general control of amino acid biosynthesis in Saccharomyces cerevisiae.
    Microbiol Rev. 1988 Jun;52(2):248-73 PMID: 3045517
  36. Cell cycle control of DNA replication by a homologue from human cells of the p34cdc2 protein kinase.
    Science. 1990 Nov 9;250(4982):786-91 PMID: 2173140
  37. Structure and function of the Saccharomyces cerevisiae CDC2 gene encoding the large subunit of DNA polymerase III.
    EMBO J. 1989 Jun;8(6):1849-54 PMID: 2670563
  38. Transcriptional regulation of the cell cycle-dependent thymidylate synthase gene of Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Nov;8(11):4616-24 PMID: 3062362
  39. Saccharomyces cerevisiae CDC8 gene and its product.
    Mol Cell Biol. 1984 Apr;4(4):583-90 PMID: 6371491
  40. Structure and function of the yeast URA3 gene. Differentially regulated expression of hybrid beta-galactosidase from overlapping coding sequences in yeast.
    J Mol Biol. 1983 Nov 15;170(4):883-904 PMID: 6315953
  41. DNA topoisomerase II is required at the time of mitosis in yeast.
    Cell. 1985 Jun;41(2):553-63 PMID: 2985283
  42. Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site.
    Cell. 1983 Apr;32(4):1279-86 PMID: 6301690
  43. Isolation of yeast histone genes H2A and H2B.
    Cell. 1979 Dec;18(4):1261-71 PMID: 519767
  44. CDC6 mRNA fluctuates periodically in the yeast cell cycle.
    J Biol Chem. 1990 Nov 15;265(32):19904-9 PMID: 2246267
  45. A single essential gene, PRI2, encodes the large subunit of DNA primase in Saccharomyces cerevisiae.
    Mol Cell Biol. 1989 Jul;9(7):3081-7 PMID: 2528682
  46. Sterile host yeasts (SHY): a eukaryotic system of biological containment for recombinant DNA experiments.
    Gene. 1979 Dec;8(1):17-24 PMID: 395030
  47. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  48. A cell cycle-responsive transcriptional control element and a negative control element in the gene encoding DNA polymerase alpha in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1991 Jul 15;88(14):6058-62 PMID: 2068085
Article Info
Journal
Current genetics
Abbr.
Curr Genet
ISSN
0172-8083
Published
1992-03-00
Pages
183-9
Language
English
Region
United States
NLM ID
8004904
Subset
IM
Databases
GENBANK
J03268, M83092, S47168, S49998, S50001, S72771, X58277, X64094, X64095, X64096
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]