Home LiteratureArticle Details
PMID: 1656457 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

An unusual mechanism for resistance to the antibiotic coumermycin A1.

del Castillo I, Vizán JL, Rodríguez-Sáinz MC, Moreno F

Abstract

Bacterial DNA gyrases are type II topoisomerases made up of two A subunits and two B subunits. Coumarins are carbohydrate-containing antibiotics that inhibit topoisomerases II by competing with ATP for binding to the enzymes. High resistance to coumarins is produced in bacterial species by mutations in gyrB, the gene encoding subunit B. We have found an unusual mechanism of resistance to coumarins in Escherichia coli. This mechanism is exhibited by cells containing the wild-type gyrB, or its 5' half, in high copy number. Since homologous mutant gyrB (coumermycin resistant) truncated genes did not confer drug resistance at all under the same conditions, we propose that this mechanism of resistance is due to drug sequestration by the overproduced wild-type GyrB polypeptides. A corollary of this is that the amino half of GyrB is required and sufficient to fashion the ATP-binding domain of DNA gyrase, a conclusion that was further supported by mapping three independent coumarin-resistant mutations at Arg-136 of GyrB. Just upstream of this residue there is a glycine-rich sequence highly conserved in all topoisomerases II, which seems to be a good candidate for the actual ATP-binding site.

Related Genes
MeSH Terms
Amino Acid Sequence Aminocoumarins Cloning, Molecular Codon Coumarins/pharmacology DNA Mutational Analysis DNA Topoisomerases, Type II/physiology DNA, Bacterial/genetics Drug Resistance, Microbial Escherichia coli/drug effects Gene Expression Genes, Bacterial Molecular Sequence Data Plasmids Restriction Mapping
Chemicals
Aminocoumarins Codon Coumarins DNA, Bacterial DNA Topoisomerases, Type II coumermycin
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
del Castillo I
Unidad de Genética Molecular, Hospital Ramón y Cajal, Madrid, Spain.
Vizán J L
Rodríguez-Sáinz M C
Moreno F
References (45)
45 references, click to expand
  1. Affinity labeling of ras oncogene product p21 with guanosine diphospho- and triphosphopyridoxals.
    J Biol Chem. 1988 Oct 5;263(28):14261-6 PMID: 3139654
  2. Quinolone-resistant mutations of the gyrA gene of Escherichia coli.
    Mol Gen Genet. 1988 Jan;211(1):1-7 PMID: 2830458
  3. Inhibitors of DNA topoisomerases.
    Biochemistry. 1988 Apr 5;27(7):2253-9 PMID: 2838070
  4. Cloning and sequencing of cDNA encoding human DNA topoisomerase II and localization of the gene to chromosome region 17q21-22.
    Proc Natl Acad Sci U S A. 1988 Oct;85(19):7177-81 PMID: 2845399
  5. Nalidixic acid-resistant mutations of the gyrB gene of Escherichia coli.
    Mol Gen Genet. 1986 Sep;204(3):367-73 PMID: 3020376
  6. DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.
    Nucleic Acids Res. 1987 Jan 26;15(2):771-84 PMID: 3029692
  7. Mechanistic aspects of DNA topoisomerases.
    Adv Protein Chem. 1986;38:69-107 PMID: 3026152
  8. Affinity labeling of adenylate kinase with adenosine diphosphopyridoxal. Presence of Lys21 in the ATP-binding site.
    J Biol Chem. 1987 Jun 15;262(17):8257-61 PMID: 3036805
  9. Recent studies of DNA topoisomerases.
    Biochim Biophys Acta. 1987 Jun 6;909(1):1-9 PMID: 3034331
  10. DNA topoisomerases: enzymes that control DNA conformation.
    Curr Top Microbiol Immunol. 1985;114:19-102 PMID: 2986908
  11. DNA topoisomerases.
    Annu Rev Biochem. 1985;54:665-97 PMID: 2992360
  12. The ATP binding site on rho protein. Affinity labeling of Lys181 by pyridoxal 5'-diphospho-5'-adenosine.
    J Biol Chem. 1988 Dec 15;263(35):18810-5 PMID: 3143717
  13. Tryptic fragments of the Escherichia coli DNA gyrase A protein.
    J Biol Chem. 1989 Nov 25;264(33):19648-53 PMID: 2555327
  14. Regulation of DNA supercoiling in Escherichia coli: genetic basis of a compensatory mutation in DNA gyrase.
    FEBS Lett. 1989 Aug 14;253(1-2):67-70 PMID: 2547660
  15. Structure of the Drosophila DNA topoisomerase II gene. Nucleotide sequence and homology among topoisomerases II.
    J Mol Biol. 1989 Jan 5;205(1):1-13 PMID: 2538621
  16. DNA gyrase: purification and catalytic properties of a fragment of gyrase B protein.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6289-93 PMID: 230505
  17. A topoisomerase from Escherichia coli related to DNA gyrase.
    Proc Natl Acad Sci U S A. 1979 Dec;76(12):6110-4 PMID: 230498
  18. Mutations in DNA gyrase result in novobiocin resistance in halophilic archaebacteria.
    J Bacteriol. 1991 Jan;173(2):642-8 PMID: 1846146
  19. The peptide antibiotic microcin B17 induces double-strand cleavage of DNA mediated by E. coli DNA gyrase.
    EMBO J. 1991 Feb;10(2):467-76 PMID: 1846808
  20. Characterization of the ATP binding site on Escherichia coli DNA gyrase. Affinity labeling of Lys-103 and Lys-110 of the B subunit by pyridoxal 5'-diphospho-5'-adenosine.
    J Biol Chem. 1990 Dec 5;265(34):21342-9 PMID: 2174443
  21. Nucleotide sequence of the gyrB gene of Pseudomonas putida.
    Nucleic Acids Res. 1990 Oct 11;18(19):5880 PMID: 2170947
  22. NMR studies of the mechanism of enzyme action.
    Adv Enzymol Relat Areas Mol Biol. 1987;59:241-313 PMID: 3544711
  23. Sequence of the lon gene in Escherichia coli. A heat-shock gene which encodes the ATP-dependent protease La.
    J Biol Chem. 1988 Aug 25;263(24):11718-28 PMID: 3042779
  24. DNA gyrase on the bacterial chromosome: DNA cleavage induced by oxolinic acid.
    J Mol Biol. 1979 Jun 25;131(2):287-302 PMID: 226717
  25. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4767-71 PMID: 200930
  26. Simple method for identification of plasmid-coded proteins.
    J Bacteriol. 1979 Jan;137(1):692-3 PMID: 368040
  27. Energy coupling in DNA gyrase and the mechanism of action of novobiocin.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4838-42 PMID: 368801
  28. Superhelical Escherichia coli DNA: relaxation by coumermycin.
    J Mol Biol. 1978 Apr 5;120(2):145-54 PMID: 347091
  29. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4772-6 PMID: 337300
  30. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  31. Novobiocin and coumermycin inhibit DNA supercoiling catalyzed by DNA gyrase.
    Proc Natl Acad Sci U S A. 1976 Dec;73(12):4474-8 PMID: 794878
  32. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  33. Identification of alpha-subunit Lys201 and beta-subunit Lys155 at the ATP-binding sites in Escherichia coli F1-ATPase.
    FEBS Lett. 1988 Jun 20;233(2):347-51 PMID: 2898387
  34. The DNA dependence of the ATPase activity of DNA gyrase.
    J Biol Chem. 1984 Dec 10;259(23):14472-80 PMID: 6094559
  35. Biology of bacterial deoxyribonucleic acid topoisomerases.
    Microbiol Rev. 1984 Dec;48(4):273-89 PMID: 6097803
  36. The TOP2 gene of Trypanosoma brucei: a single-copy gene that shares extensive homology with other TOP2 genes encoding eukaryotic DNA topoisomerase II.
    Mol Biochem Parasitol. 1990 Jan 1;38(1):141-50 PMID: 2157153
  37. Linkage map of Escherichia coli K-12, edition 8.
    Microbiol Rev. 1990 Jun;54(2):130-97 PMID: 2194094
  38. DNA topoisomerases.
    Annu Rev Biochem. 1981;50:879-910 PMID: 6267993
  39. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinases and other ATP-requiring enzymes and a common nucleotide binding fold.
    EMBO J. 1982;1(8):945-51 PMID: 6329717
  40. Cloning and simplified purification of Escherichia coli DNA gyrase A and B proteins.
    J Biol Chem. 1984 Jul 25;259(14):9199-201 PMID: 6086626
  41. DNA gyrase: affinity chromatography on novobiocin-Sepharose and catalytic properties.
    Nucleic Acids Res. 1981 Aug 11;9(15):3589-603 PMID: 6269086
  42. Versatile low-copy-number plasmid vectors for cloning in Escherichia coli.
    Gene. 1982 Jun;18(3):335-41 PMID: 6290337
  43. DNA gyrase and the supercoiling of DNA.
    Science. 1980 Feb 29;207(4434):953-60 PMID: 6243420
  44. Deoxyribonucleic acid gyrase-deoxyribonucleic acid complex containing 140 base pairs of deoxyribonucleic acid and an alpha 2 beta 2 protein core.
    Biochemistry. 1980 Nov 11;19(23):5229-34 PMID: 6255987
  45. Isolation and characterisation of a strain carrying a conditional lethal mutation in the cou gene of Escherichia coli K12.
    Mol Gen Genet. 1979;177(1):103-12 PMID: 94144
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1991-10-01
Pages
8860-4
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC52610
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]