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PMID: 18155474 Published · ppublish English Journal Article

Bimolecular fluorescence complementation: visualization of molecular interactions in living cells.

Methods in cell biology ·Vol. 85 ·2008-00-00 ·Pages 431-70

Kerppola TK

Abstract

A variety of experimental methods have been developed for the analysis of protein interactions. The majority of these methods either require disruption of the cells to detect molecular interactions or rely on indirect detection of the protein interaction. The bimolecular fluorescence complementation (BiFC) assay provides a direct approach for the visualization of molecular interactions in living cells and organisms. The BiFC approach is based on the facilitated association between two fragments of a fluorescent protein when the fragments are brought together by an interaction between proteins fused to the fragments. The BiFC approach has been used for visualization of interactions among a variety of structurally diverse interaction partners in many different cell types. It enables detection of transient complexes as well as complexes formed by a subpopulation of the interaction partners. It is essential to include negative controls in each experiment in which the interface between the interaction partners has been mutated or deleted. The BiFC assay has been adapted for simultaneous visualization of multiple protein complexes in the same cell and the competition for shared interaction partners. A ubiquitin-mediated fluorescence complementation assay has also been developed for visualization of the covalent modification of proteins by ubiquitin family peptides. These fluorescence complementation assays have a great potential to illuminate a variety of biological interactions in the future.

MeSH Terms
Animals Fluorescence Luminescent Proteins Microscopy, Fluorescence/methods Proteins/metabolism Recombinant Fusion Proteins/metabolism Ubiquitins/metabolism
Chemicals
Luminescent Proteins Proteins Recombinant Fusion Proteins Ubiquitins
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Kerppola Tom K
Department of Biological Chemistry, Howard Hughes Medical Institute, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA.
References (100)
100 references, click to expand
  1. Mechanisms of proinflammatory cytokine-induced biphasic NF-kappaB activation.
    Mol Cell. 2003 Nov;12(5):1287-300 PMID: 14636585
  2. Dimerization of the cytokine receptors gp130 and LIFR analysed in single cells.
    J Cell Sci. 2005 Nov 1;118(Pt 21):5129-40 PMID: 16254248
  3. Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature. 2002 Jan 10;415(6868):141-7 PMID: 11805826
  4. Proximal, selective, and dynamic interactions between integrin alphaIIbbeta3 and protein tyrosine kinases in living cells.
    J Cell Biol. 2004 May 10;165(3):305-11 PMID: 15123737
  5. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis.
    Nat Biotechnol. 2003 May;21(5):539-45 PMID: 12692560
  6. Fluorescence correlation spectroscopy of GFP fusion proteins in living plant cells.
    Methods Enzymol. 2003;361:93-112 PMID: 12624908
  7. The rainbow of fluorescent proteins.
    Methods Cell Biol. 2004;75:153-69 PMID: 15603425
  8. Degradation of Hof1 by SCF(Grr1) is important for actomyosin contraction during cytokinesis in yeast.
    EMBO J. 2005 Apr 6;24(7):1440-52 PMID: 15775961
  9. Complementary methods for studies of protein interactions in living cells.
    Nat Methods. 2006 Dec;3(12):969-71 PMID: 17117150
  10. The plant VirE2 interacting protein 1. a molecular link between the Agrobacterium T-complex and the host cell chromatin?
    Plant Physiol. 2005 Jul;138(3):1318-21 PMID: 16010006
  11. Protein-protein interactions monitored in mammalian cells via complementation of beta -lactamase enzyme fragments.
    Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3469-74 PMID: 11904411
  12. LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants.
    Plant Cell Physiol. 2005 Oct;46(10):1623-34 PMID: 16051676
  13. Visualization of the spatial and temporal dynamics of intracellular signaling.
    Dev Cell. 2003 Mar;4(3):295-305 PMID: 12636912
  14. A map of the interactome network of the metazoan C. elegans.
    Science. 2004 Jan 23;303(5657):540-3 PMID: 14704431
  15. A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4569-74 PMID: 11283351
  16. FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex.
    Science. 2005 Aug 12;309(5737):1052-6 PMID: 16099979
  17. In planta analysis of protein-protein interactions related to light signaling by bimolecular fluorescence complementation.
    Protoplasma. 2005 Dec;226(3-4):137-46 PMID: 16333572
  18. An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein.
    Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12651-6 PMID: 12271129
  19. Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs.
    EMBO J. 2004 Aug 18;23(16):3346-55 PMID: 15282548
  20. The VirE3 protein of Agrobacterium mimics a host cell function required for plant genetic transformation.
    EMBO J. 2005 Jan 26;24(2):428-37 PMID: 15616576
  21. Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application.
    Biophys J. 1993 Sep;65(3):1135-46 PMID: 8241393
  22. Monitoring regulated protein-protein interactions using split TEV.
    Nat Methods. 2006 Dec;3(12):985-93 PMID: 17072307
  23. Visualization of Myc/Max/Mad family dimers and the competition for dimerization in living cells.
    Mol Cell Biol. 2004 May;24(10):4294-308 PMID: 15121849
  24. Combinatorial marking of cells and organelles with reconstituted fluorescent proteins.
    Cell. 2004 Oct 1;119(1):137-44 PMID: 15454087
  25. DNA sequence-enabled reassembly of the green fluorescent protein.
    J Am Chem Soc. 2005 Aug 10;127(31):10782-3 PMID: 16076155
  26. Capturing protein interactions in the secretory pathway of living cells.
    Proc Natl Acad Sci U S A. 2005 May 3;102(18):6350-5 PMID: 15849265
  27. Use of bimolecular fluorescence complementation to demonstrate transcription factor interaction in nuclei of living cells from the filamentous fungus Acremonium chrysogenum.
    Curr Genet. 2005 Feb;47(2):132-8 PMID: 15688253
  28. Heterodimeric interactions among the 1-amino-cyclopropane-1-carboxylate synthase polypeptides encoded by the Arabidopsis gene family.
    Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2275-80 PMID: 14983000
  29. Bimolecular fluorescence complementation analysis of cytochrome p450 2c2, 2e1, and NADPH-cytochrome p450 reductase molecular interactions in living cells.
    Drug Metab Dispos. 2005 Sep;33(9):1382-90 PMID: 15980100
  30. Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12141-6 PMID: 9770453
  31. Bromodomain protein Brd4 binds to GTPase-activating SPA-1, modulating its activity and subcellular localization.
    Mol Cell Biol. 2004 Oct;24(20):9059-69 PMID: 15456879
  32. A photoactivatable GFP for selective photolabeling of proteins and cells.
    Science. 2002 Sep 13;297(5588):1873-7 PMID: 12228718
  33. PKB/Akt modulates TGF-beta signalling through a direct interaction with Smad3.
    Nat Cell Biol. 2004 Apr;6(4):358-65 PMID: 15048128
  34. Regulation of apoptosis by the Ft1 protein, a new modulator of protein kinase B/Akt.
    Mol Cell Biol. 2004 Feb;24(4):1493-504 PMID: 14749367
  35. Agrobacterium tumefaciens oncogenic suppressors inhibit T-DNA and VirE2 protein substrate binding to the VirD4 coupling protein.
    Mol Microbiol. 2005 Oct;58(2):565-79 PMID: 16194240
  36. Fluorescence resonance energy transfer analysis of protein-protein interactions in single living cells by multifocal multiphoton microscopy.
    J Biotechnol. 2002 Jan;82(3):267-77 PMID: 11999694
  37. Evolutions in science triggered by green fluorescent protein (GFP).
    Chembiochem. 2005 Jul;6(7):1149-56 PMID: 15934049
  38. Mutual regulation of c-Jun and ATF2 by transcriptional activation and subcellular localization.
    EMBO J. 2006 Mar 8;25(5):1058-69 PMID: 16511568
  39. Monitoring protein-protein interactions in intact eukaryotic cells by beta-galactosidase complementation.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8405-10 PMID: 9237989
  40. Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation.
    Plant J. 2004 Nov;40(3):428-38 PMID: 15469500
  41. Direct measurement of Gag-Gag interaction during retrovirus assembly with FRET and fluorescence correlation spectroscopy.
    J Cell Biol. 2003 Sep 29;162(7):1233-44 PMID: 14517204
  42. In vivo BiFC analysis of Y14 and NXF1 mRNA export complexes: preferential localization within and around SC35 domains.
    J Cell Biol. 2006 Jan 30;172(3):373-81 PMID: 16431928
  43. FRET imaging.
    Nat Biotechnol. 2003 Nov;21(11):1387-95 PMID: 14595367
  44. TRAF6 activation of PI 3-kinase-dependent cytoskeletal changes is cooperative with Ras and is mediated by an interaction with cytoplasmic Src.
    J Cell Sci. 2006 Apr 15;119(Pt 8):1579-91 PMID: 16569657
  45. Loss of Bif-1 suppresses Bax/Bak conformational change and mitochondrial apoptosis.
    Mol Cell Biol. 2005 Nov;25(21):9369-82 PMID: 16227588
  46. A protein interaction map of Drosophila melanogaster.
    Science. 2003 Dec 5;302(5651):1727-36 PMID: 14605208
  47. Selective recognition of acetylated histones by bromodomain proteins visualized in living cells.
    Mol Cell. 2004 Jan 16;13(1):33-43 PMID: 14731392
  48. Kindling fluorescent proteins for precise in vivo photolabeling.
    Nat Biotechnol. 2003 Feb;21(2):191-4 PMID: 12524551
  49. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.
    Proc Natl Acad Sci U S A. 2005 Mar 29;102(13):4908-12 PMID: 15781858
  50. BAP31 is involved in the retention of cytochrome P450 2C2 in the endoplasmic reticulum.
    J Biol Chem. 2006 Feb 17;281(7):4142-8 PMID: 16332681
  51. A highly sensitive protein-protein interaction assay based on Gaussia luciferase.
    Nat Methods. 2006 Dec;3(12):977-9 PMID: 17099704
  52. Visualization of molecular activities inside living cells with fluorescent labels.
    Int Rev Cytol. 2004;237:205-77 PMID: 15380669
  53. Circularly permuted green fluorescent proteins engineered to sense Ca2+.
    Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):3197-202 PMID: 11248055
  54. Using live FRET imaging to reveal early protein-protein interactions during T cell activation.
    Curr Opin Immunol. 2004 Aug;16(4):418-27 PMID: 15245734
  55. "Fluorescent timer": protein that changes color with time.
    Science. 2000 Nov 24;290(5496):1585-8 PMID: 11090358
  56. Visualization of molecular interactions by fluorescence complementation.
    Nat Rev Mol Cell Biol. 2006 Jun;7(6):449-56 PMID: 16625152
  57. Visualization of APP dimerization and APP-Notch2 heterodimerization in living cells using bimolecular fluorescence complementation.
    J Neurochem. 2006 Apr;97(1):30-43 PMID: 16515557
  58. Split ubiquitin as a sensor of protein interactions in vivo.
    Proc Natl Acad Sci U S A. 1994 Oct 25;91(22):10340-4 PMID: 7937952
  59. Fluorescence correlation microscopy (FCM)-fluorescence correlation spectroscopy (FCS) taken into the cell.
    Cell Mol Biol (Noisy-le-grand). 1998 Jul;44(5):847-56 PMID: 9764751
  60. Plastid division is mediated by combinatorial assembly of plastid division proteins.
    Plant J. 2005 Sep;43(6):811-23 PMID: 16146521
  61. Ubiquitin-mediated fluorescence complementation reveals that Jun ubiquitinated by Itch/AIP4 is localized to lysosomes.
    Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14782-7 PMID: 15469925
  62. Monitoring protein-protein interactions using split synthetic renilla luciferase protein-fragment-assisted complementation.
    Anal Chem. 2003 Apr 1;75(7):1584-9 PMID: 12705589
  63. Identification of new fluorescent protein fragments for bimolecular fluorescence complementation analysis under physiological conditions.
    Biotechniques. 2006 Jan;40(1):61-6 PMID: 16454041
  64. Synergistic transcription activation by Maf and Sox and their subnuclear localization are disrupted by a mutation in Maf that causes cataract.
    Mol Cell Biol. 2004 Jul;24(13):5694-709 PMID: 15199128
  65. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.
    Nat Biotechnol. 2002 Jan;20(1):87-90 PMID: 11753368
  66. AtSufE is an essential activator of plastidic and mitochondrial desulfurases in Arabidopsis.
    EMBO J. 2006 Feb 22;25(4):900-9 PMID: 16437155
  67. Uncoupling of the functions of the Arabidopsis VIP1 protein in transient and stable plant genetic transformation by Agrobacterium.
    Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5733-8 PMID: 15824315
  68. Beta-lactamase protein fragment complementation assays as in vivo and in vitro sensors of protein protein interactions.
    Nat Biotechnol. 2002 Jun;20(6):619-22 PMID: 12042868
  69. Creating new fluorescent probes for cell biology.
    Nat Rev Mol Cell Biol. 2002 Dec;3(12):906-18 PMID: 12461557
  70. The F-box protein Skp2 participates in c-Myc proteosomal degradation and acts as a cofactor for c-Myc-regulated transcription.
    Mol Cell. 2003 May;11(5):1189-200 PMID: 12769844
  71. Live cell imaging of Gs and the beta2-adrenergic receptor demonstrates that both alphas and beta1gamma7 internalize upon stimulation and exhibit similar trafficking patterns that differ from that of the beta2-adrenergic receptor.
    J Biol Chem. 2004 Oct 15;279(42):44101-12 PMID: 15297467
  72. Partner-regulated interaction of IFN regulatory factor 8 with chromatin visualized in live macrophages.
    Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14368-73 PMID: 16183743
  73. F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function.
    Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1994-9 PMID: 16446454
  74. The DOF protein, SAD, interacts with GAMYB in plant nuclei and activates transcription of endosperm-specific genes during barley seed development.
    Plant J. 2005 Jun;42(5):652-62 PMID: 15918880
  75. A human protein-protein interaction network: a resource for annotating the proteome.
    Cell. 2005 Sep 23;122(6):957-68 PMID: 16169070
  76. Illuminating insights into protein-protein interactions using bioluminescence resonance energy transfer (BRET).
    Nat Methods. 2006 Mar;3(3):165-74 PMID: 16489332
  77. Visualization of G protein betagamma dimers using bimolecular fluorescence complementation demonstrates roles for both beta and gamma in subcellular targeting.
    J Biol Chem. 2004 Jul 16;279(29):30279-86 PMID: 15136579
  78. Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III.
    Plant Cell. 2006 Apr;18(4):815-30 PMID: 16489121
  79. VirE2, a type IV secretion substrate, interacts with the VirD4 transfer protein at cell poles of Agrobacterium tumefaciens.
    Mol Microbiol. 2003 Sep;49(6):1699-713 PMID: 12950931
  80. Fast complementation of split fluorescent protein triggered by DNA hybridization.
    Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2052-6 PMID: 16461889
  81. Split luciferase as an optical probe for detecting protein-protein interactions in mammalian cells based on protein splicing.
    Anal Chem. 2001 Jun 1;73(11):2516-21 PMID: 11403293
  82. Phospholipase Cbeta2 binds to and inhibits phospholipase Cdelta1.
    J Biol Chem. 2005 Jan 14;280(2):1438-47 PMID: 15509571
  83. Time-lapse imaging of a dynamic phosphorylation-dependent protein-protein interaction in mammalian cells.
    Proc Natl Acad Sci U S A. 2002 Nov 12;99(23):15142-7 PMID: 12415118
  84. Inhibition of Mist1 homodimer formation induces pancreatic acinar-to-ductal metaplasia.
    Mol Cell Biol. 2004 Apr;24(7):2673-81 PMID: 15024058
  85. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation.
    Mol Cell. 2002 Apr;9(4):789-98 PMID: 11983170
  86. Protein-protein interaction of FHL3 with FHL2 and visualization of their interaction by green fluorescent proteins (GFP) two-fusion fluorescence resonance energy transfer (FRET).
    J Cell Biochem. 2001;80(3):293-303 PMID: 11135358
  87. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation.
    Plant J. 2004 Nov;40(3):419-27 PMID: 15469499
  88. Imagining imaging's future.
    Nat Rev Mol Cell Biol. 2003 Sep;Suppl:SS16-21 PMID: 14587522
  89. The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.
    Mol Cell. 2005 Aug 19;19(4):523-34 PMID: 16109376
  90. Noninvasive imaging of protein-protein interactions in living subjects by using reporter protein complementation and reconstitution strategies.
    Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15608-13 PMID: 12438689
  91. Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.
    Nat Biotechnol. 2005 Jan;23(1):102-7 PMID: 15580262
  92. Interaction of EGF receptor and grb2 in living cells visualized by fluorescence resonance energy transfer (FRET) microscopy.
    Curr Biol. 2000 Nov 2;10(21):1395-8 PMID: 11084343
  93. ON THE ENZYMIC ACTIVITY OF SUBTILISIN-MODIFIED RIBONUCLEASE.
    Proc Natl Acad Sci U S A. 1958 Feb;44(2):162-6 PMID: 16590160
  94. The Aspergillus nidulans phytochrome FphA represses sexual development in red light.
    Curr Biol. 2005 Oct 25;15(20):1833-8 PMID: 16243030
  95. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction.
    Plant J. 2006 Feb;45(3):423-38 PMID: 16412087
  96. Oligomerization is required for HIV-1 Nef-induced activation of the Src family protein-tyrosine kinase, Hck.
    Biochemistry. 2004 Dec 21;43(50):15775-84 PMID: 15595833
  97. Dynamics of GBF1, a Brefeldin A-sensitive Arf1 exchange factor at the Golgi.
    Mol Biol Cell. 2005 Mar;16(3):1213-22 PMID: 15616190
  98. Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium.
    Nature. 2004 Sep 2;431(7004):87-92 PMID: 15343337
  99. Phosphorylation of BATF regulates DNA binding: a novel mechanism for AP-1 (activator protein-1) regulation.
    Biochem J. 2003 Sep 1;374(Pt 2):423-31 PMID: 12809553
  100. Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.
    J Am Chem Soc. 2005 Jan 12;127(1):146-57 PMID: 15631464
Article Info
Journal
Methods in cell biology
Abbr.
Methods Cell Biol
ISSN
0091-679X
Published
2008-00-00
Pages
431-70
Language
English
Region
United States
NLM ID
0373334
PMCID
PMC2829325
Subset
IM
Grants
Howard Hughes Medical Institute · United States
NIGMS NIH HHS · R01 GM086213 · United States
NIGMS NIH HHS · R01 GM086213-01 · United States
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