Home LiteratureArticle Details
PMID: 18455984 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Implications for kinetochore-microtubule attachment from the structure of an engineered Ndc80 complex.

Cell ·Vol. 133 ·No. 3 ·2008-05-02 ·Pages 427-39

Ciferri C, Pasqualato S, Screpanti E, Varetti G, Santaguida S, Dos Reis G, Maiolica A, Polka J, De Luca JG, De Wulf P, Salek M, Rappsilber J, Moores CA, Salmon ED, Musacchio A

Abstract

Kinetochores are proteinaceous assemblies that mediate the interaction of chromosomes with the mitotic spindle. The 180 kDa Ndc80 complex is a direct point of contact between kinetochores and microtubules. Its four subunits contain coiled coils and form an elongated rod structure with functional globular domains at either end. We crystallized an engineered "bonsai" Ndc80 complex containing a shortened rod domain but retaining the globular domains required for kinetochore localization and microtubule binding. The structure reveals a microtubule-binding interface containing a pair of tightly interacting calponin-homology (CH) domains with a previously unknown arrangement. The interaction with microtubules is cooperative and predominantly electrostatic. It involves positive charges in the CH domains and in the N-terminal tail of the Ndc80 subunit and negative charges in tubulin C-terminal tails and is regulated by the Aurora B kinase. We discuss our results with reference to current models of kinetochore-microtubule attachment and centromere organization.

MeSH Terms
Amino Acid Sequence Cell Cycle Proteins/chemistry,genetics,metabolism Crystallography, X-Ray Cytoskeletal Proteins Humans Kinetochores/metabolism Mass Spectrometry Microtubule-Associated Proteins/chemistry,genetics,metabolism Microtubules/metabolism Models, Molecular Molecular Sequence Data Nuclear Proteins/chemistry,genetics,metabolism Protein Engineering Spindle Apparatus/metabolism
Chemicals
Cell Cycle Proteins Cytoskeletal Proteins Microtubule-Associated Proteins NDC80 protein, human NUF2 protein, human Nuclear Proteins SPC24 protein, human
Authors & Affiliations
15 authors, click to expand affiliations / ORCID
Ciferri Claudio
Department of Experimental Oncology, European Institute of Oncology, Via Adamello 16, I 20139 Milan, Italy.
Pasqualato Sebastiano
Screpanti Emanuela
Varetti Gianluca
Santaguida Stefano
Dos Reis Gabriel
Maiolica Alessio
Polka Jessica
De Luca Jennifer G
De Wulf Peter
Salek Mogjiborahman
Rappsilber Juri
Moores Carolyn A
Salmon Edward D
Musacchio Andrea
References (53)
53 references, click to expand
  1. Regulation of microtubule-associated proteins.
    Int Rev Cytol. 2001;210:163-226 PMID: 11580206
  2. Centromere identity is specified by a single centromeric nucleosome in budding yeast.
    Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14706-11 PMID: 17804787
  3. Structure, function, and regulation of budding yeast kinetochores.
    Annu Rev Cell Dev Biol. 2003;19:519-39 PMID: 14570580
  4. Phylogenetic and structural analysis of centromeric DNA and kinetochore proteins.
    Genome Biol. 2006;7(3):R23 PMID: 16563186
  5. CLAMP, a novel microtubule-associated protein with EB-type calponin homology.
    Cell Motil Cytoskeleton. 2005 Nov;62(3):141-56 PMID: 16206169
  6. Breaking good resolutions with ARP/wARP.
    J Synchrotron Radiat. 2004 Jan 1;11(Pt 1):56-9 PMID: 14646134
  7. Identification of two novel components of the human NDC80 kinetochore complex.
    J Biol Chem. 2004 Mar 26;279(13):13076-85 PMID: 14699129
  8. The Buccaneer software for automated model building. 1. Tracing protein chains.
    Acta Crystallogr D Biol Crystallogr. 2006 Sep;62(Pt 9):1002-11 PMID: 16929101
  9. The human CENP-A centromeric nucleosome-associated complex.
    Nat Cell Biol. 2006 May;8(5):458-69 PMID: 16622419
  10. Structural analysis of multiprotein complexes by cross-linking, mass spectrometry, and database searching.
    Mol Cell Proteomics. 2007 Dec;6(12):2200-11 PMID: 17921176
  11. Dynamic behavior of Nuf2-Hec1 complex that localizes to the centrosome and centromere and is essential for mitotic progression in vertebrate cells.
    J Cell Sci. 2003 Aug 15;116(Pt 16):3347-62 PMID: 12829748
  12. Phaser crystallographic software.
    J Appl Crystallogr. 2007 Aug 1;40(Pt 4):658-674 PMID: 19461840
  13. Centromeres and kinetochores: from epigenetics to mitotic checkpoint signaling.
    Cell. 2003 Feb 21;112(4):407-21 PMID: 12600307
  14. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  15. The dynamic kinetochore-microtubule interface.
    J Cell Sci. 2004 Nov 1;117(Pt 23):5461-77 PMID: 15509863
  16. The outer plate in vertebrate kinetochores is a flexible network with multiple microtubule interactions.
    Nat Cell Biol. 2007 May;9(5):516-22 PMID: 17435749
  17. The vertebrate Ndc80 complex contains Spc24 and Spc25 homologs, which are required to establish and maintain kinetochore-microtubule attachment.
    Curr Biol. 2004 Jan 20;14(2):131-7 PMID: 14738735
  18. Crystal structure of the amino-terminal microtubule-binding domain of end-binding protein 1 (EB1).
    J Biol Chem. 2003 Sep 19;278(38):36430-4 PMID: 12857735
  19. Refinement of macromolecular structures by the maximum-likelihood method.
    Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55 PMID: 15299926
  20. Functional plasticity of CH domains.
    FEBS Lett. 2002 Feb 20;513(1):98-106 PMID: 11911887
  21. Molecular organization of the Ndc80 complex, an essential kinetochore component.
    Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5363-7 PMID: 15809444
  22. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  23. Tuning bulk electrostatics to regulate protein function.
    Cell. 2007 Feb 9;128(3):441-4 PMID: 17289565
  24. General quadratic functions in real and reciprocal space and their application to likelihood phasing.
    Acta Crystallogr D Biol Crystallogr. 2000 Dec;56(Pt 12):1612-21 PMID: 11092927
  25. Molecular architecture of the kinetochore-microtubule interface.
    Nat Rev Mol Cell Biol. 2008 Jan;9(1):33-46 PMID: 18097444
  26. Phosphoproteome analysis of the human mitotic spindle.
    Proc Natl Acad Sci U S A. 2006 Apr 4;103(14):5391-6 PMID: 16565220
  27. Aurora kinase promotes turnover of kinetochore microtubules to reduce chromosome segregation errors.
    Curr Biol. 2006 Sep 5;16(17):1711-8 PMID: 16950108
  28. Molecular architecture of a kinetochore-microtubule attachment site.
    Nat Cell Biol. 2006 Jun;8(6):581-5 PMID: 16715078
  29. Cooperative mechanisms of mitotic spindle formation.
    J Cell Sci. 2007 May 15;120(Pt 10):1717-22 PMID: 17502482
  30. The conserved KMN network constitutes the core microtubule-binding site of the kinetochore.
    Cell. 2006 Dec 1;127(5):983-97 PMID: 17129783
  31. [20] Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-326 PMID: 27799103
  32. Calponin homology domains at a glance.
    J Cell Sci. 2002 Sep 15;115(Pt 18):3543-5 PMID: 12186940
  33. Structural basis of microtubule plus end tracking by XMAP215, CLIP-170, and EB1.
    Mol Cell. 2007 Sep 21;27(6):976-91 PMID: 17889670
  34. The Ndc80 complex: hub of kinetochore activity.
    FEBS Lett. 2007 Jun 19;581(15):2862-9 PMID: 17521635
  35. Does Vav bind to F-actin through a CH domain?
    FEBS Lett. 1995 Oct 30;374(2):149-51 PMID: 7589522
  36. Inference of macromolecular assemblies from crystalline state.
    J Mol Biol. 2007 Sep 21;372(3):774-97 PMID: 17681537
  37. Mechanism of Aurora B activation by INCENP and inhibition by hesperadin.
    Mol Cell. 2005 Apr 29;18(3):379-91 PMID: 15866179
  38. The Schizosaccharomyces pombe EB1 homolog Mal3p binds and stabilizes the microtubule lattice seam.
    Cell. 2006 Dec 29;127(7):1415-24 PMID: 17190604
  39. Coot: model-building tools for molecular graphics.
    Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32 PMID: 15572765
  40. Architecture of the human ndc80-hec1 complex, a critical constituent of the outer kinetochore.
    J Biol Chem. 2005 Aug 12;280(32):29088-95 PMID: 15961401
  41. Kinetochore-spindle microtubule interactions during mitosis.
    Curr Opin Cell Biol. 2005 Feb;17(1):35-46 PMID: 15661517
  42. Mapping the assembly pathways that specify formation of the trilaminar kinetochore plates in human cells.
    J Cell Biol. 2006 Oct 9;175(1):41-53 PMID: 17030981
  43. Automated structure solution with autoSHARP.
    Methods Mol Biol. 2007;364:215-30 PMID: 17172768
  44. Kinetochore microtubule dynamics and attachment stability are regulated by Hec1.
    Cell. 2006 Dec 1;127(5):969-82 PMID: 17129782
  45. How microtubules get fluorescent speckles.
    Biophys J. 1998 Oct;75(4):2059-69 PMID: 9746548
  46. The Ndc80/HEC1 complex is a contact point for kinetochore-microtubule attachment.
    Nat Struct Mol Biol. 2007 Jan;14(1):54-9 PMID: 17195848
  47. Structure of a central component of the yeast kinetochore: the Spc24p/Spc25p globular domain.
    Structure. 2006 Jun;14(6):1003-9 PMID: 16765893
  48. Kinetochore capture and bi-orientation on the mitotic spindle.
    Nat Rev Mol Cell Biol. 2005 Dec;6(12):929-42 PMID: 16341079
  49. Hec1 and nuf2 are core components of the kinetochore outer plate essential for organizing microtubule attachment sites.
    Mol Biol Cell. 2005 Feb;16(2):519-31 PMID: 15548592
  50. The CENP-H-I complex is required for the efficient incorporation of newly synthesized CENP-A into centromeres.
    Nat Cell Biol. 2006 May;8(5):446-57 PMID: 16622420
  51. The spindle-assembly checkpoint in space and time.
    Nat Rev Mol Cell Biol. 2007 May;8(5):379-93 PMID: 17426725
  52. Fimbrin is a homologue of the cytoplasmic phosphoprotein plastin and has domains homologous with calmodulin and actin gelation proteins.
    J Cell Biol. 1990 Sep;111(3):1069-79 PMID: 2391360
  53. Spindle checkpoint proteins and chromosome-microtubule attachment in budding yeast.
    J Cell Biol. 2004 Feb 16;164(4):535-46 PMID: 14769859
Article Info
Journal
Cell
Abbr.
Cell
ISSN
1097-4172
Published
2008-05-02
Pages
427-39
Language
English
Region
United States
NLM ID
0413066
PMCID
PMC4754795
Subset
IM
Grants
Telethon · GGP06044 · Italy
NCI NIH HHS · K01 CA125051 · United States
NIGMS NIH HHS · R37 GM024364 · United States
Databases
PDB
Corrections
CommentIn
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]