Home LiteratureArticle Details
PMID: 2009858 Published · ppublish English Journal Article

Mutational analysis of the putative effector domain of the GTP-binding Ypt1 protein in yeast suggests specific regulation by a novel GAP activity.

The EMBO journal ·Vol. 10 ·No. 4 ·1991-04-00 ·Pages 785-92

Becker J, Tan TJ, Trepte HH, Gallwitz D

Abstract

Ypt1p of Saccharomyces cerevisiae is a ras-related GTP-binding protein that fulfils an essential function in intracellular protein transport between the endoplasmic reticulum (ER) and the Golgi complex. Ypt proteins from yeasts and mammals that share an identical sequence in the region analogous to the ras effector domain are functionally interchangeable. We analyzed the function of the putative effector domain of yeast Ypt1p (amino acids 37-45) using site-directed mutagenesis and gene replacement. Four out of six point mutations leading to single amino acid substitutions (Y37F, S39A, T40S and V43E) did not cause any particular phenotype. ypt1(I41M) mutants were inviable whereas ypt1(D44N) mutant cells were temperature sensitive at 37 degrees C and accumulated core-glycosylated invertase at the nonpermissive temperature. This mutant also accumulated ER and small vesicles both at 25 degrees C and 37 degrees C. From porcine liver we identified and partially purified a GTPase-activating protein (yptGAP) that is similarly active with mouse ypt1p/rab1p and yeast Ypt1p but is inactive with H-ras protein as a substrate. Although none of the yeast ypt1 mutant proteins were significantly impaired in their ability to bind GTP, purified ypt1(D44N)p responded only partially and ypt1(I41M)p did not respond at all, to yptGAP. Thus we suggest that analogous to rasGAP/H-ras p21 interaction in mammalian cells, yptGAP is an intracellular target of Ypt1p, interacting with the effector domain and regulating its GTPase activity, and that this interaction is required for the functioning of yeast Ypt1p in intracellular protein transport.

MeSH Terms
Amino Acid Sequence Base Sequence Cloning, Molecular Escherichia coli/genetics Fungal Proteins/genetics GTP Phosphohydrolases/metabolism GTPase-Activating Proteins Genes, Fungal Glycoside Hydrolases/metabolism Kinetics Molecular Sequence Data Mutagenesis, Site-Directed Oligonucleotide Probes Phenotype Proteins/genetics,metabolism Saccharomyces cerevisiae/genetics,growth & development,metabolism,ultrastructure Saccharomyces cerevisiae Proteins Temperature beta-Fructofuranosidase rab GTP-Binding Proteins ras GTPase-Activating Proteins
Chemicals
Fungal Proteins GTPase-Activating Proteins Oligonucleotide Probes Proteins Saccharomyces cerevisiae Proteins ras GTPase-Activating Proteins Glycoside Hydrolases beta-Fructofuranosidase GTP Phosphohydrolases YPT1 protein, S cerevisiae rab GTP-Binding Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Becker J
Max-Planck-Institute for Biophysical Chemistry, Department of Molecular Genetics, Göttingen, Germany.
Tan T J
Trepte H H
Gallwitz D
References (68)
68 references, click to expand
  1. Synthetic peptides of the Rab effector domain inhibit vesicular transport through the secretory pathway.
    EMBO J. 1990 Aug;9(8):2375-83 PMID: 2114975
  2. Molecular cloning and characterization of a novel type of regulatory protein (GDI) for smg p25A, a ras p21-like GTP-binding protein.
    Mol Cell Biol. 1990 Aug;10(8):4116-22 PMID: 2115118
  3. IRA2, a second gene of Saccharomyces cerevisiae that encodes a protein with a domain homologous to mammalian ras GTPase-activating protein.
    Mol Cell Biol. 1990 Aug;10(8):4303-13 PMID: 2164637
  4. Inhibition of GTPase activating protein stimulation of Ras-p21 GTPase by the Krev-1 gene product.
    Science. 1990 Jul 13;249(4965):169-71 PMID: 2164710
  5. Molecular cloning and characterization of a novel type of regulatory protein (GDI) for the rho proteins, ras p21-like small GTP-binding proteins.
    Oncogene. 1990 Sep;5(9):1321-8 PMID: 2120668
  6. The GTPase superfamily: a conserved switch for diverse cell functions.
    Nature. 1990 Nov 8;348(6297):125-32 PMID: 2122258
  7. Purification of a plasma membrane-associated GTPase-activating protein specific for rap1/Krev-1 from HL60 cells.
    Proc Natl Acad Sci U S A. 1991 Jan 1;88(1):239-43 PMID: 1846040
  8. IRA2, an upstream negative regulator of RAS in yeast, is a RAS GTPase-activating protein.
    Proc Natl Acad Sci U S A. 1991 Jan 15;88(2):468-72 PMID: 1988946
  9. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  10. Computer reconstruction of mitochondria from yeast.
    Methods Enzymol. 1979;56:718-28 PMID: 379519
  11. The structural genes of internal invertases in Saccharomyces cerevisiae.
    Mol Gen Genet. 1979 Sep;175(2):223-9 PMID: 390316
  12. Compartmentalized assembly of oligosaccharides on exported glycoproteins in yeast.
    Cell. 1981 Aug;25(2):451-60 PMID: 7026044
  13. Transformation of intact yeast cells treated with alkali cations.
    J Bacteriol. 1983 Jan;153(1):163-8 PMID: 6336730
  14. Structure and organization of the human Ki-ras proto-oncogene and a related processed pseudogene.
    Nature. 1983 Aug 11-17;304(5926):501-6 PMID: 6308466
  15. A yeast gene encoding a protein homologous to the human c-has/bas proto-oncogene product.
    Nature. 1983 Dec 15-21;306(5944):704-7 PMID: 6318115
  16. Functional homology of mammalian and yeast RAS genes.
    Cell. 1985 Jan;40(1):19-26 PMID: 2981628
  17. In yeast, RAS proteins are controlling elements of adenylate cyclase.
    Cell. 1985 Jan;40(1):27-36 PMID: 2981630
  18. Mammalian and yeast ras gene products: biological function in their heterologous systems.
    Science. 1985 Apr 12;228(4696):179-84 PMID: 3883495
  19. Invertase signal and mature sequence substitutions that delay intercompartmental transport of active enzyme.
    J Cell Biol. 1985 May;100(5):1664-75 PMID: 3886671
  20. Mutant ras-encoded proteins with altered nucleotide binding exert dominant biological effects.
    Proc Natl Acad Sci U S A. 1986 Feb;83(4):952-6 PMID: 3513168
  21. Suppressors of the ras2 mutation of Saccharomyces cerevisiae.
    Genetics. 1986 Jun;113(2):247-64 PMID: 3013722
  22. The ras-related YPT1 gene product in yeast: a GTP-binding protein that might be involved in microtubule organization.
    Cell. 1986 Nov 7;47(3):401-12 PMID: 3094963
  23. Inhibition of restriction endonuclease Nci I cleavage by phosphorothioate groups and its application to oligonucleotide-directed mutagenesis.
    Nucleic Acids Res. 1986 Dec 22;14(24):9679-98 PMID: 3027659
  24. The S. cerevisiae CDC25 gene product regulates the RAS/adenylate cyclase pathway.
    Cell. 1987 Mar 13;48(5):789-99 PMID: 3545497
  25. GTP-binding domain: three consensus sequence elements with distinct spacing.
    Proc Natl Acad Sci U S A. 1987 Apr;84(7):1814-8 PMID: 3104905
  26. A ras-like protein is required for a post-Golgi event in yeast secretion.
    Cell. 1987 May 22;49(4):527-38 PMID: 3552249
  27. G proteins: transducers of receptor-generated signals.
    Annu Rev Biochem. 1987;56:615-49 PMID: 3113327
  28. ras genes.
    Annu Rev Biochem. 1987;56:779-827 PMID: 3304147
  29. A cytoplasmic protein stimulates normal N-ras p21 GTPase, but does not affect oncogenic mutants.
    Science. 1987 Oct 23;238(4826):542-5 PMID: 2821624
  30. Biochemical properties of the ras-related YPT protein in yeast: a mutational analysis.
    EMBO J. 1987 Aug;6(8):2373-9 PMID: 3311726
  31. Four additional members of the ras gene superfamily isolated by an oligonucleotide strategy: molecular cloning of YPT-related cDNAs from a rat brain library.
    Proc Natl Acad Sci U S A. 1987 Dec;84(23):8210-4 PMID: 3317403
  32. Involvement of GTP-binding "G" proteins in transport through the Golgi stack.
    Cell. 1987 Dec 24;51(6):1053-62 PMID: 2826014
  33. The yeast GTP-binding YPT1 protein and a mammalian counterpart are associated with the secretion machinery.
    Cell. 1988 Mar 25;52(6):915-24 PMID: 3127057
  34. The ras-related ypt protein is an ubiquitous eukaryotic protein: isolation and sequence analysis of mouse cDNA clones highly homologous to the yeast YPT1 gene.
    EMBO J. 1987 Dec 20;6(13):4049-53 PMID: 3127202
  35. The cytoplasmic protein GAP is implicated as the target for regulation by the ras gene product.
    Nature. 1988 Apr 7;332(6164):548-51 PMID: 2833702
  36. Guanosine triphosphatase activating protein (GAP) interacts with the p21 ras effector binding domain.
    Science. 1988 Apr 22;240(4851):518-21 PMID: 2833817
  37. Study of a temperature-sensitive mutant of the ras-related YPT1 gene product in yeast suggests a role in the regulation of intracellular calcium.
    Cell. 1988 May 20;53(4):635-47 PMID: 3286011
  38. Do GTPases direct membrane traffic in secretion?
    Cell. 1988 Jun 3;53(5):669-71 PMID: 2836065
  39. A GTP-binding protein required for secretion rapidly associates with secretory vesicles and the plasma membrane in yeast.
    Cell. 1988 Jun 3;53(5):753-68 PMID: 3131018
  40. Purification of ras GTPase activating protein from bovine brain.
    Proc Natl Acad Sci U S A. 1988 Jul;85(14):5026-30 PMID: 3293047
  41. Cloning of bovine GAP and its interaction with oncogenic ras p21.
    Nature. 1988 Sep 1;335(6185):90-3 PMID: 2842690
  42. Molecular cloning of two types of GAP complementary DNA from human placenta.
    Science. 1988 Dec 23;242(4886):1697-700 PMID: 3201259
  43. Identification of distinct cytoplasmic targets for ras/R-ras and rho regulatory proteins.
    J Biol Chem. 1989 Jan 5;264(1):10-3 PMID: 2491843
  44. The ras superfamily proteins.
    Biochimie. 1988 Jul;70(7):865-8 PMID: 3145021
  45. IRA1, an inhibitory regulator of the RAS-cyclic AMP pathway in Saccharomyces cerevisiae.
    Mol Cell Biol. 1989 Feb;9(2):757-68 PMID: 2540426
  46. Purification and characterization from bovine brain cytosol of two GTPase-activating proteins specific for smg p21, a GTP-binding protein having the same effector domain as c-ras p21s.
    J Biol Chem. 1989 Jun 5;264(16):9133-6 PMID: 2542301
  47. The human Rab genes encode a family of GTP-binding proteins related to yeast YPT1 and SEC4 products involved in secretion.
    J Biol Chem. 1989 Jul 25;264(21):12394-401 PMID: 2501306
  48. The ras-related mouse ypt1 protein can functionally replace the YPT1 gene product in yeast.
    EMBO J. 1989 May;8(5):1427-32 PMID: 2670553
  49. Mutational analysis of SEC4 suggests a cyclical mechanism for the regulation of vesicular traffic.
    EMBO J. 1989 Jun;8(6):1685-93 PMID: 2504585
  50. The GTP-binding protein Ypt1 is required for transport in vitro: the Golgi apparatus is defective in ypt1 mutants.
    J Cell Biol. 1989 Sep;109(3):1015-22 PMID: 2504726
  51. Structure of the guanine-nucleotide-binding domain of the Ha-ras oncogene product p21 in the triphosphate conformation.
    Nature. 1989 Sep 21;341(6239):209-14 PMID: 2476675
  52. MSI1, a negative regulator of the RAS-cAMP pathway in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1989 Nov;86(22):8778-82 PMID: 2554329
  53. Genetic analysis of mammalian GAP expressed in yeast.
    Cell. 1989 Nov 17;59(4):681-6 PMID: 2684416
  54. A novel GTP-binding protein, Sar1p, is involved in transport from the endoplasmic reticulum to the Golgi apparatus.
    J Cell Biol. 1989 Dec;109(6 Pt 1):2677-91 PMID: 2512296
  55. GTP-binding Ypt1 protein and Ca2+ function independently in a cell-free protein transport reaction.
    Proc Natl Acad Sci U S A. 1990 Jan;87(1):355-9 PMID: 2104983
  56. ADP-ribosylation factor is functionally and physically associated with the Golgi complex.
    Proc Natl Acad Sci U S A. 1990 Feb;87(3):1238-42 PMID: 2105501
  57. Ras interaction with the GTPase-activating protein (GAP).
    Proteins. 1989;6(3):306-15 PMID: 2516318
  58. Molecular switch for signal transduction: structural differences between active and inactive forms of protooncogenic ras proteins.
    Science. 1990 Feb 23;247(4945):939-45 PMID: 2406906
  59. S. cerevisiae genes IRA1 and IRA2 encode proteins that may be functionally equivalent to mammalian ras GTPase activating protein.
    Cell. 1990 Mar 9;60(5):803-7 PMID: 2178777
  60. A cytosolic protein catalyzes the release of GDP from p21ras.
    Science. 1990 Apr 6;248(4951):67-9 PMID: 2181667
  61. Identification of ras-related, YPT family genes in Schizosaccharomyces pombe.
    EMBO J. 1990 May;9(5):1417-22 PMID: 2328721
  62. Biochemical characterization of baculovirus-expressed rap1A/Krev-1 and its regulation by GTPase-activating proteins.
    Mol Cell Biol. 1990 Jun;10(6):2901-8 PMID: 2160589
  63. Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis.
    Nature. 1990 May 24;345(6273):309-15 PMID: 2111463
  64. Enhancement of the GDP-GTP exchange of RAS proteins by the carboxyl-terminal domain of SCD25.
    Science. 1990 May 18;248(4957):866-8 PMID: 2188363
  65. Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway.
    Cell. 1990 May 18;61(4):723-33 PMID: 2188733
  66. The ryh1 gene in the fission yeast Schizosaccharomyces pombe encoding a GTP-binding protein related to ras, rho and ypt: structure, expression and identification of its human homologue.
    EMBO J. 1990 Jun;9(6):1949-55 PMID: 2112088
  67. Structural and functional analysis of ypt2, an essential ras-related gene in the fission yeast Schizosaccharomyces pombe encoding a Sec4 protein homologue.
    EMBO J. 1990 Jun;9(6):1957-62 PMID: 2112089
  68. ras and GAP--who's controlling whom?
    Cell. 1990 Jun 15;61(6):921-3 PMID: 2190692
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1991-04-00
Pages
785-92
Language
English
Region
England
NLM ID
8208664
PMCID
PMC452717
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]