Home LiteratureArticle Details
PMID: 2046664 Published · ppublish English Comparative Study Journal Article

Translation initiation factor 4A from Saccharomyces cerevisiae: analysis of residues conserved in the D-E-A-D family of RNA helicases.

Molecular and cellular biology ·Vol. 11 ·No. 7 ·1991-07-00 ·Pages 3463-71

Schmid SR, Linder P

Abstract

The eukaryotic translation initiation factor 4A (eIF-4A) possesses an in vitro helicase activity that allows the unwinding of double-stranded RNA. This activity is dependent on ATP hydrolysis and the presence of another translation initiation factor, eIF-4B. These two initiation factors are thought to unwind mRNA secondary structures in preparation for ribosome binding and initiation of translation. To further characterize the function of eIF-4A in cellular translation and its interaction with other elements of the translation machinery, we have isolated mutations in the TIF1 and TIF2 genes encoding eIF-4A in Saccharomyces cerevisiae. We show that three highly conserved domains of the D-E-A-D protein family, encoding eIF-4A and other RNA helicases, are essential for protein function. Only in rare cases could we make a conservative substitution without affecting cell growth. The mutants show a clear correlation between their growth and in vivo translation rates. One mutation that results in a temperature-sensitive phenotype reveals an immediate decrease in translation activity following a shift to the nonpermissive temperature. These in vivo results confirm previous in vitro data demonstrating an absolute dependence of translation on the TIF1 and TIF2 gene products.

Related Genes
MeSH Terms
Amino Acid Sequence Cloning, Molecular Escherichia coli/genetics Eukaryotic Initiation Factor-4A Genes, Fungal Genetic Vectors Genotype Molecular Sequence Data Multigene Family Mutagenesis, Site-Directed Peptide Initiation Factors/genetics Plasmids Protein Biosynthesis RNA Helicases RNA Nucleotidyltransferases/genetics Restriction Mapping Saccharomyces cerevisiae/enzymology,genetics
Chemicals
Peptide Initiation Factors Eukaryotic Initiation Factor-4A RNA Nucleotidyltransferases RNA Helicases
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Schmid S R
Department of Microbiology, Biozentrum, Basel, Switzerland.
Linder P
References (51)
51 references, click to expand
  1. Identification of two genes coding for the translation elongation factor EF-1 alpha of S. cerevisiae.
    EMBO J. 1984 Dec 20;3(13):3311-5 PMID: 6396088
  2. Translation initiation factor 5A and its hypusine modification are essential for cell viability in the yeast Saccharomyces cerevisiae.
    Mol Cell Biol. 1991 Jun;11(6):3105-14 PMID: 1903841
  3. Cloning of eukaryotic protein synthesis initiation factor genes: isolation and characterization of cDNA clones encoding factor eIF-4A.
    Nucleic Acids Res. 1985 Oct 11;13(19):6867-80 PMID: 3840589
  4. ATP-binding site of adenylate kinase: mechanistic implications of its homology with ras-encoded p21, F1-ATPase, and other nucleotide-binding proteins.
    Proc Natl Acad Sci U S A. 1986 Feb;83(4):907-11 PMID: 2869483
  5. A mitochondrial RNA maturase gene transferred to the yeast nucleus can control mitochondrial mRNA splicing.
    Cell. 1986 Sep 12;46(6):837-44 PMID: 2875797
  6. Nuclear protein with sequence homology to translation initiation factor eIF-4A.
    Nature. 1988 Apr 21;332(6166):736-8 PMID: 2451786
  7. A new superfamily of replicative proteins.
    Nature. 1988 May 5;333(6168):22-3 PMID: 3362205
  8. Mutations at a Zn(II) finger motif in the yeast eIF-2 beta gene alter ribosomal start-site selection during the scanning process.
    Cell. 1988 Aug 26;54(5):621-32 PMID: 3136928
  9. The mouse protein synthesis initiation factor 4A gene family includes two related functional genes which are differentially expressed.
    EMBO J. 1988 Jul;7(7):2097-105 PMID: 3046931
  10. The product of the Drosophila gene vasa is very similar to eukaryotic initiation factor-4A.
    Nature. 1988 Oct 13;335(6191):611-7 PMID: 3140040
  11. tRNAi(met) functions in directing the scanning ribosome to the start site of translation.
    Science. 1988 Oct 7;242(4875):93-7 PMID: 3051379
  12. Mutation of lysine-48 to arginine in the yeast RAD3 protein abolishes its ATPase and DNA helicase activities but not the ability to bind ATP.
    EMBO J. 1988 Oct;7(10):3263-9 PMID: 2846277
  13. An eIF-4A-like protein is a suppressor of an Escherichia coli mutant defective in 50S ribosomal subunit assembly.
    Nature. 1988 Dec 1;336(6198):496-8 PMID: 2461520
  14. Sequence of the genes TIF1 and TIF2 from Saccharomyces cerevisiae coding for a translation initiation factor.
    Nucleic Acids Res. 1988 Nov 11;16(21):10359 PMID: 3057442
  15. Site-directed alterations in the ATP-binding domain of rho protein affect its activities as a termination factor.
    J Biol Chem. 1988 Dec 15;263(35):18802-9 PMID: 2461932
  16. Mitochondrial splicing requires a protein from a novel helicase family.
    Nature. 1989 Jan 5;337(6202):84-7 PMID: 2535893
  17. A single gene coding for resistance to both fusidic acid and chloramphenicol.
    J Mol Biol. 1982 Jan 25;154(3):417-25 PMID: 7042982
  18. A GAL10-CYC1 hybrid yeast promoter identifies the GAL4 regulatory region as an upstream site.
    Proc Natl Acad Sci U S A. 1982 Dec;79(23):7410-4 PMID: 6760197
  19. RNA-stimulated ATPase activity of eukaryotic initiation factors.
    J Biol Chem. 1984 Jul 10;259(13):8648-54 PMID: 6145716
  20. Two nuclear mutations that block mitochondrial protein import in yeast.
    Proc Natl Acad Sci U S A. 1984 Aug;81(15):4819-23 PMID: 6235522
  21. Birth of the D-E-A-D box.
    Nature. 1989 Jan 12;337(6203):121-2 PMID: 2563148
  22. Cap-binding proteins of eukaryotic messenger RNA: functions in initiation and control of translation.
    Prog Nucleic Acid Res Mol Biol. 1988;35:173-207 PMID: 3065823
  23. An essential yeast protein, encoded by duplicated genes TIF1 and TIF2 and homologous to the mammalian translation initiation factor eIF-4A, can suppress a mitochondrial missense mutation.
    Proc Natl Acad Sci U S A. 1989 Apr;86(7):2286-90 PMID: 2648398
  24. Cap recognition and the entry of mRNA into the protein synthesis initiation cycle.
    Trends Biochem Sci. 1988 Feb;13(2):52-6 PMID: 3238751
  25. Yeast translation initiation suppressor sui2 encodes the alpha subunit of eukaryotic initiation factor 2 and shares sequence identity with the human alpha subunit.
    Proc Natl Acad Sci U S A. 1989 Apr;86(8):2784-8 PMID: 2649894
  26. Identification and characterization of cap-binding proteins from yeast.
    J Biol Chem. 1989 May 5;264(13):7603-10 PMID: 2651444
  27. The protein encoded by a murine male germ cell-specific transcript is a putative ATP-dependent RNA helicase.
    Cell. 1989 May 19;57(4):549-59 PMID: 2720782
  28. RNA helicase activity associated with the human p68 protein.
    Nature. 1989 Jun 15;339(6225):562-4 PMID: 2471939
  29. A mammalian translation initiation factor can substitute for its yeast homologue in vivo.
    J Biol Chem. 1989 Jul 25;264(21):12145-7 PMID: 2663851
  30. Translation in Saccharomyces cerevisiae: initiation factor 4A-dependent cell-free system.
    Proc Natl Acad Sci U S A. 1989 Aug;86(16):6043-6 PMID: 2668952
  31. Control of ribosome biogenesis in yeast.
    Trends Genet. 1988 Mar;4(3):64-8 PMID: 3076293
  32. Dissociation of double-stranded polynucleotide helical structures by eukaryotic initiation factors, as revealed by a novel assay.
    Biochemistry. 1989 May 30;28(11):4729-34 PMID: 2548591
  33. Nuclear protein p68 is an RNA-dependent ATPase.
    EMBO J. 1989 Jun;8(6):1827-31 PMID: 2527746
  34. A lysine substitution in the ATP-binding site of eucaryotic initiation factor 4A abrogates nucleotide-binding activity.
    Mol Cell Biol. 1989 Sep;9(9):4061-3 PMID: 2506440
  35. Translation in Saccharomyces cerevisiae: initiation factor 4E-dependent cell-free system.
    Mol Cell Biol. 1989 Oct;9(10):4467-72 PMID: 2685552
  36. Bidirectional RNA helicase activity of eucaryotic translation initiation factors 4A and 4F.
    Mol Cell Biol. 1990 Mar;10(3):1134-44 PMID: 2304461
  37. Identification of five putative yeast RNA helicase genes.
    Proc Natl Acad Sci U S A. 1990 Feb;87(4):1571-5 PMID: 2406722
  38. Translation initiation and ribosomal biogenesis: involvement of a putative rRNA helicase and RPL46.
    Science. 1990 Mar 2;247(4946):1077-9 PMID: 2408148
  39. A putative ATP binding protein influences the fidelity of branchpoint recognition in yeast splicing.
    Cell. 1990 Mar 9;60(5):705-17 PMID: 2138057
  40. Variations in cap-binding complexes from uninfected and poliovirus-infected HeLa cells.
    J Biol Chem. 1990 May 5;265(13):7492-500 PMID: 2159001
  41. PRP5: a helicase-like protein required for mRNA splicing in yeast.
    Proc Natl Acad Sci U S A. 1990 Jun;87(11):4236-40 PMID: 2349233
  42. Identification of a putative RNA helicase in E.coli.
    Nucleic Acids Res. 1990 Sep 25;18(18):5413-7 PMID: 2216714
  43. A novel RNA helicase gene tightly linked to the Triplo-lethal locus of Drosophila.
    Nucleic Acids Res. 1990 Sep 25;18(18):5489-94 PMID: 2170937
  44. The yeast PRP2 protein, a putative RNA-dependent ATPase, shares extensive sequence homology with two other pre-mRNA splicing factors.
    Nucleic Acids Res. 1990 Nov 11;18(21):6447 PMID: 2147058
  45. The ADE2 gene from Saccharomyces cerevisiae: sequence and new vectors.
    Gene. 1990 Oct 30;95(1):91-8 PMID: 2253890
  46. RNA splicing. Alive with DEAD proteins.
    Nature. 1991 Feb 7;349(6309):463-4 PMID: 1825133
  47. Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes.
    Nature. 1991 Feb 7;349(6309):487-93 PMID: 1992352
  48. A suppressor of a yeast splicing mutation (prp8-1) encodes a putative ATP-dependent RNA helicase.
    Nature. 1991 Feb 21;349(6311):715-7 PMID: 1996139
  49. The Xenopus localized messenger RNA An3 may encode an ATP-dependent RNA helicase.
    Nature. 1991 Feb 21;349(6311):717-9 PMID: 1996140
  50. Baker's yeast, the new work horse in protein synthesis studies: analyzing eukaryotic translation initiation.
    Bioessays. 1990 Nov;12(11):519-26 PMID: 2085318
  51. ATP-dependent unwinding of messenger RNA structure by eukaryotic initiation factors.
    J Biol Chem. 1985 Jun 25;260(12):7651-8 PMID: 3838990
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
1991-07-00
Pages
3463-71
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC361078
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]