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PMID: 2173787 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Evidence for covalent attachment of the adeno-associated virus (AAV) rep protein to the ends of the AAV genome.

Journal of virology ·Vol. 64 ·No. 12 ·1990-12-00 ·Pages 6204-13

Snyder RO, Im DS, Muzyczka N

Abstract

We have demonstrated that when the covalently joined ends of linear adeno-associated virus (AAV) DNA are resolved in vitro, the virus-encoded Rep protein becomes covalently attached to the 5' ends of the DNA. The covalent bond is between a tyrosine residue of the AAV Rep protein and a 5' phosphate of a thymidine residue in the AAV genome. Only the Rep protein encoded by the AAV p5 promoter, Rep68, was capable of becoming covalently attached to the ends of the AAV genome; the Rep proteins encoded by the p19 promoter were not. We also investigated some of the requirements for the complete in vitro resolution reaction. Inhibitor studies suggested that terminal resolution required DNA polymerase delta, ATP, and the deoxyribonucleoside triphosphates but did not require the remaining ribonucleoside triphosphates, DNA polymerase alpha, RNA polymerase II, or topoisomerases I and II. Finally, purified AAV Rep68, when added to the crude cytosol from uninfected HeLa cells, was sufficient for resolution. This suggested that terminal resolution relies on host enzymes and the virus-encoded p5 Rep proteins.

MeSH Terms
Binding Sites DNA Polymerase III DNA Replication DNA, Viral/genetics,metabolism DNA-Directed DNA Polymerase/metabolism Dependovirus/genetics Genes, Viral HeLa Cells/metabolism Humans Models, Genetic Nucleic Acid Hybridization Plasmids Protein Binding Tyrosine Viral Proteins/metabolism
Chemicals
DNA, Viral Viral Proteins Tyrosine DNA Polymerase III DNA-Directed DNA Polymerase
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Snyder R O
Department of Microbiology, State University of New York, Stony Brook Medical School 11794-8621.
Im D S
Muzyczka N
References (74)
74 references, click to expand
  1. Adeno-associated virus general transduction vectors: analysis of proviral structures.
    J Virol. 1988 Jun;62(6):1963-73 PMID: 2835501
  2. Mammalian DNA polymerases alpha and delta: current status in DNA replication.
    Biochemistry. 1988 Jun 28;27(13):4591-5 PMID: 3048386
  3. Evidence for a ligation step in the DNA replication of the autonomous parvovirus minute virus of mice.
    J Virol. 1989 Feb;63(2):1002-6 PMID: 2911112
  4. Characterization of a large form of DNA polymerase delta from HeLa cells that is insensitive to proliferating cell nuclear antigen.
    J Biol Chem. 1989 Feb 15;264(5):2489-97 PMID: 2563372
  5. DNA polymerase alpha.
    J Biol Chem. 1989 Mar 15;264(8):4265-8 PMID: 2647732
  6. Calf thymus DNA polymerase delta independent of proliferating cell nuclear antigen (PCNA).
    Nucleic Acids Res. 1989 Mar 11;17(5):1805-21 PMID: 2564661
  7. Factors that bind to adeno-associated virus terminal repeats.
    J Virol. 1989 Jul;63(7):3095-104 PMID: 2542617
  8. Helper-free stocks of recombinant adeno-associated viruses: normal integration does not require viral gene expression.
    J Virol. 1989 Sep;63(9):3822-8 PMID: 2547998
  9. A genome-linked copy of the NS-1 polypeptide is located on the outside of infectious parvovirus particles.
    J Virol. 1989 Sep;63(9):3902-11 PMID: 2527311
  10. Maturation of parvovirus LuIII in a subcellular system. II. Isolation and characterization of nucleoprotein intermediates.
    J Gen Virol. 1983 May;64(Pt 5):1055-67 PMID: 6221078
  11. Mutagenesis of an AUG codon in the adeno-associated virus rep gene: effects on viral DNA replication.
    Virology. 1989 Nov;173(1):120-8 PMID: 2554565
  12. In vitro resolution of covalently joined AAV chromosome ends.
    Cell. 1990 Jan 12;60(1):105-13 PMID: 2153052
  13. Proteins of viral and cellular origin bind to the Aleutian disease virus (ADV) DNA 3'-terminal hairpin: presentation of a scheme for encapsidation of ADV DNA.
    J Virol. 1990 Apr;64(4):1598-605 PMID: 2157046
  14. The AAV origin binding protein Rep68 is an ATP-dependent site-specific endonuclease with DNA helicase activity.
    Cell. 1990 May 4;61(3):447-57 PMID: 2159383
  15. Positive and negative autoregulation of the adeno-associated virus type 2 genome.
    J Virol. 1986 Oct;60(1):251-8 PMID: 3018288
  16. DNA replication and UV-induced DNA repair synthesis in human fibroblasts are much less sensitive than DNA polymerase alpha to inhibition by butylphenyl-deoxyguanosine triphosphate.
    Nucleic Acids Res. 1986 Sep 11;14(17):7093-102 PMID: 3763398
  17. Identification of the trans-acting Rep proteins of adeno-associated virus by antibodies to a synthetic oligopeptide.
    J Virol. 1986 Dec;60(3):823-32 PMID: 3023672
  18. Negative and positive regulation in trans of gene expression from adeno-associated virus vectors in mammalian cells by a viral rep gene product.
    Mol Cell Biol. 1986 Aug;6(8):2884-94 PMID: 3491293
  19. Initiation of simian virus 40 DNA replication in vitro: aphidicolin causes accumulation of early-replicating intermediates and allows determination of the initial direction of DNA synthesis.
    Mol Cell Biol. 1986 Nov;6(11):3815-25 PMID: 3025613
  20. Bovine parvovirus DNA-binding proteins: identification by a combined DNA hybridization and immunodetection assay.
    J Gen Virol. 1987 Jan;68 ( Pt 1):147-57 PMID: 3027241
  21. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  22. DNA-minus temperature-sensitive mutants of adenovirus type 5 help adenovirus-associated virus replication.
    J Virol. 1975 Jan;17(1):140-8 PMID: 1206799
  23. Palindromic base sequences and replication of eukaryote chromosome ends.
    Nature. 1974 Aug 9;250(5466):467-70 PMID: 4469597
  24. Concatemers of alternating plus and minus strands are intermediates in adenovirus-associated virus DNA synthesis.
    Proc Natl Acad Sci U S A. 1976 Mar;73(3):742-6 PMID: 1062784
  25. A new mammalian DNA polymerase with 3' to 5' exonuclease activity: DNA polymerase delta.
    Biochemistry. 1976 Jun 29;15(13):2817-23 PMID: 949478
  26. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
    Anal Biochem. 1976 May 7;72:248-54 PMID: 942051
  27. A protein covalently linked to poliovirus genome RNA.
    Proc Natl Acad Sci U S A. 1977 Jan;74(1):59-63 PMID: 189316
  28. Structure and nucleotide sequence of the terminal regions of adeno-associated virus DNA.
    Virology. 1977 May 15;78(2):475-7 PMID: 194395
  29. phiX174 cistron A protein is a multifunctional enzyme in DNA replication.
    Proc Natl Acad Sci U S A. 1977 Aug;74(8):3198-202 PMID: 269383
  30. Nucleotide sequence of the origin of replication in bacteriophage phiX174 RF DNA.
    Nature. 1978 Feb 2;271(5644):417-20 PMID: 628424
  31. Aphidicolin prevents mitotic cell division by interfering with the activity of DNA polymerase-alpha.
    Nature. 1978 Oct 5;275(5679):458-60 PMID: 692726
  32. An enzymatic activity in uninfected cells that cleaves the linkage between poliovirion RNA and the 5' terminal protein.
    Cell. 1978 Dec;15(4):1439-46 PMID: 215328
  33. O4-(5'-uridylyl)tyrosine is the bond between the genome-linked protein and the RNA of poliovirus.
    Proc Natl Acad Sci U S A. 1978 Oct;75(10):4868-72 PMID: 217003
  34. Covalent association of protein with replicative form DNA of parvovirus H-1.
    Proc Natl Acad Sci U S A. 1979 Nov;76(11):5539-43 PMID: 293659
  35. Spliced adenovirus-associated virus RNA.
    Proc Natl Acad Sci U S A. 1979 Nov;76(11):5567-71 PMID: 230481
  36. Adeno-associated viruses.
    Adv Virus Res. 1979;25:407-49 PMID: 230727
  37. Nucleotide sequence of the inverted terminal repetition in adeno-associated virus DNA.
    J Virol. 1980 May;34(2):402-9 PMID: 6246271
  38. Transforming gene product of Rous sarcoma virus phosphorylates tyrosine.
    Proc Natl Acad Sci U S A. 1980 Mar;77(3):1311-5 PMID: 6246487
  39. Purification and properties of a HeLa cell enzyme able to remove the 5'-terminal protein from poliovirus RNA.
    J Biol Chem. 1980 Jul 25;255(14):6739-44 PMID: 6248532
  40. Transcripts of the adenovirus-associated virus genome: multiple polyadenylated RNAs including a potential primary transcript.
    J Virol. 1980 Aug;35(2):560-5 PMID: 6255194
  41. Transcripts of the adeno-associated virus genome: mapping of the major RNAs.
    J Virol. 1980 Oct;36(1):79-92 PMID: 6255215
  42. Inverted terminal repetition in adeno-associated virus DNA: independence of the orientation at either end of the genome.
    J Virol. 1981 Mar;37(3):1083-6 PMID: 6262528
  43. Herpes simplex virus types 1 and 2 completely help adenovirus-associated virus replication.
    J Virol. 1981 Oct;40(1):241-7 PMID: 6270377
  44. Mapping of the 5' termini of two adeno-associated virus 2 RNAs in the left half of the genome.
    J Virol. 1982 Feb;41(2):518-26 PMID: 6281463
  45. Cloning of adeno-associated virus into pBR322: rescue of intact virus from the recombinant plasmid in human cells.
    Proc Natl Acad Sci U S A. 1982 Mar;79(6):2077-81 PMID: 6281795
  46. Studies on the phi X174 gene A protein-mediated termination of leading strand DNA synthesis.
    J Biol Chem. 1983 Jan 10;258(1):529-37 PMID: 6294111
  47. Nucleotide sequence and organization of the adeno-associated virus 2 genome.
    J Virol. 1983 Feb;45(2):555-64 PMID: 6300419
  48. Maturation of parvovirus LuIII in a subcellular system. I. Optimal conditions for in vitro synthesis and encapsidation of viral DNA.
    J Gen Virol. 1983 May;64(Pt 5):1043-54 PMID: 6842185
  49. The bond in the bacteriophage phi X174 gene A protein--DNA complex is a tyrosyl-5'-phosphate ester.
    FEBS Lett. 1984 Aug 6;173(2):351-6 PMID: 6235129
  50. Genetics of adeno-associated virus: isolation and preliminary characterization of adeno-associated virus type 2 mutants.
    J Virol. 1984 Aug;51(2):329-39 PMID: 6086948
  51. Rescue of adeno-associated virus from recombinant plasmids: gene correction within the terminal repeats of AAV.
    Cell. 1983 May;33(1):135-43 PMID: 6088052
  52. Analysis of bacteriophage phi X174 gene A protein-mediated termination and reinitiation of phi X DNA synthesis. I. Characterization of the termination and reinitiation reactions.
    J Biol Chem. 1984 Aug 25;259(16):10545-55 PMID: 6236215
  53. Analysis of bacteriophage phi X174 gene A protein-mediated termination and reinitiation of phi X DNA synthesis. II. Structural characterization of the covalent phi X A protein-DNA complex.
    J Biol Chem. 1984 Aug 25;259(16):10556-68 PMID: 6236216
  54. Genetic analysis of adeno-associated virus: properties of deletion mutants constructed in vitro and evidence for an adeno-associated virus replication function.
    J Virol. 1984 Sep;51(3):611-9 PMID: 6088786
  55. Replication of adeno-associated virus DNA. Complementation of naturally occurring rep- mutants by a wild-type genome or an ori- mutant and correction of terminal palindrome deletions.
    J Mol Biol. 1984 Oct 15;179(1):1-20 PMID: 6094825
  56. Bacteriophage phi X174 A protein cleaves single-stranded DNA and binds to it covalently through a tyrosyl-dAMP phosphodiester bond.
    J Virol. 1985 Feb;53(2):695-7 PMID: 3155802
  57. Sequence analysis of the termini of virion and replicative forms of minute virus of mice DNA suggests a modified rolling hairpin model for autonomous parvovirus DNA replication.
    J Virol. 1985 Apr;54(1):171-7 PMID: 3973977
  58. Human cytomegalovirus completely helps adeno-associated virus replication.
    Virology. 1985 Nov;147(1):217-22 PMID: 2998066
  59. Differential inhibition of human placental DNA polymerases delta and alpha by BuPdGTP and BuAdATP.
    Nucleic Acids Res. 1985 Dec 9;13(23):8623-30 PMID: 3936020
  60. Proteins tightly associated with the termini of replicative form DNA of Kilham rat virus, an autonomous parvovirus.
    Proc Natl Acad Sci U S A. 1985 Dec;82(24):8335-9 PMID: 3866226
  61. Vaccinia virus, herpes simplex virus, and carcinogens induce DNA amplification in a human cell line and support replication of a helpervirus dependent parvovirus.
    Virology. 1986 Jul 15;152(1):110-7 PMID: 3012864
  62. An auxiliary protein for DNA polymerase-delta from fetal calf thymus.
    J Biol Chem. 1986 Sep 15;261(26):12310-6 PMID: 3745189
  63. Structural and functional homology of parvovirus and papovavirus polypeptides.
    J Gen Virol. 1987 Mar;68 ( Pt 3):885-93 PMID: 3819702
  64. Replication of adeno-associated virus in synchronized cells without the addition of a helper virus.
    J Virol. 1987 Apr;61(4):972-81 PMID: 3029431
  65. Roles of DNA topoisomerases in simian virus 40 DNA replication in vitro.
    Proc Natl Acad Sci U S A. 1987 Feb;84(4):950-4 PMID: 3029765
  66. The cell-cycle regulated proliferating cell nuclear antigen is required for SV40 DNA replication in vitro.
    Nature. 1987 Apr 2-8;326(6112):471-5 PMID: 2882422
  67. Cyclin/PCNA is the auxiliary protein of DNA polymerase-delta.
    Nature. 1987 Apr 2-8;326(6112):515-7 PMID: 2882423
  68. Functional identity of proliferating cell nuclear antigen and a DNA polymerase-delta auxiliary protein.
    Nature. 1987 Apr 2-8;326(6112):517-20 PMID: 2882424
  69. Human placental DNA polymerase delta: identification of a 170-kilodalton polypeptide by activity staining and immunoblotting.
    Biochemistry. 1987 Feb 24;26(4):1076-85 PMID: 2436659
  70. The autonomously replicating parvoviruses of vertebrates.
    Adv Virus Res. 1987;33:91-174 PMID: 3296697
  71. Adeno-associated viruses: an update.
    Adv Virus Res. 1987;32:243-306 PMID: 3039813
  72. A recombinant plasmid from which an infectious adeno-associated virus genome can be excised in vitro and its use to study viral replication.
    J Virol. 1987 Oct;61(10):3096-101 PMID: 3041032
  73. The NS-1 polypeptide of minute virus of mice is covalently attached to the 5' termini of duplex replicative-form DNA and progeny single strands.
    J Virol. 1988 Mar;62(3):851-60 PMID: 3339715
  74. Coordinated leading and lagging strand synthesis during SV40 DNA replication in vitro requires PCNA.
    Cell. 1988 Apr 8;53(1):117-26 PMID: 2894900
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1990-12-00
Pages
6204-13
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC248795
Subset
IM
Grants
NCI NIH HHS · 5PO1 CA2814607 · United States
NIAID NIH HHS · AI25530 · United States
NIGMS NIH HHS · R01 GM3572302 · United States
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