Home LiteratureArticle Details
PMID: 2499683 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Codon reassignment (codon capture) in evolution.

Journal of molecular evolution ·Vol. 28 ·No. 4 ·1989-04-00 ·Pages 271-8

Osawa S, Jukes TH

Abstract

The genetic code, once thought to be "frozen," shows variations from the universal code. Variations are found in mitochondria, Mycoplasma, and ciliated protozoa. The variations result from reassignment of codons, especially stop codons. The reassignments take place by disappearance of a codon from coding sequences, followed by its reappearance in a new role. Simultaneously, a changed anticodon must appear. We discuss the role of directional mutation pressure in the events, and we also describe the possibility that such events have taken place during early evolution of the genetic code and can occur during its present evolution.

MeSH Terms
Animals Biological Evolution Codon/genetics DNA, Mitochondrial/genetics Eukaryota/genetics Genetic Code Mutation Mycoplasma/genetics RNA, Messenger/genetics
Chemicals
Codon DNA, Mitochondrial RNA, Messenger
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Osawa S
Nagoya University, Department of Biology, Japan.
Jukes T H
References (48)
48 references, click to expand
  1. Evolution of anticodons: variations in the genetic code.
    Cold Spring Harb Symp Quant Biol. 1987;52:769-76 PMID: 3454289
  2. Sequence and organization of the human mitochondrial genome.
    Nature. 1981 Apr 9;290(5806):457-65 PMID: 7219534
  3. The Zea mays mitochondrial gene coding cytochrome oxidase subunit II has an intervening sequence and does not contain TGA codons.
    Cell. 1981 Nov;26(3 Pt 1):315-23 PMID: 6276012
  4. Evolution of the genetic code as affected by anticodon content.
    Trends Genet. 1988 Jul;4(7):191-8 PMID: 3070867
  5. Occurrence of unmodified adenine and uracil at the first position of anticodon in threonine tRNAs in Mycoplasma capricolum.
    Proc Natl Acad Sci U S A. 1987 Nov;84(21):7398-402 PMID: 3502716
  6. Role of directional mutation pressure in the evolution of the eubacterial genetic code.
    Cold Spring Harb Symp Quant Biol. 1987;52:777-89 PMID: 3331355
  7. Amino acid codes in mitochondria as possible clues to primitive codes.
    J Mol Evol. 1981;18(1):15-7 PMID: 6801266
  8. Compilation of tRNA sequences and sequences of tRNA genes.
    Nucleic Acids Res. 1987;15 Suppl:r53-188 PMID: 3554146
  9. Yeast mitochondrial tRNAIle and tRNAMetm: nucleotide sequence and codon recognition patterns.
    Nucleic Acids Res. 1985 Feb 25;13(4):1341-5 PMID: 3889839
  10. Bizarre tRNAs inferred from DNA sequences of mitochondrial genomes of nematode worms.
    Proc Natl Acad Sci U S A. 1987 Mar;84(5):1324-8 PMID: 3469671
  11. On the genetic basis of variation and heterogeneity of DNA base composition.
    Proc Natl Acad Sci U S A. 1962 Apr 15;48:582-92 PMID: 13918161
  12. Codon usage tabulated from the GenBank genetic sequence data.
    Nucleic Acids Res. 1986;14 Suppl:r151-97 PMID: 3703684
  13. Nucleotide sequence of a macronuclear DNA molecule coding for alpha-tubulin from the ciliate Stylonychia lemnae. Special codon usage: TAA is not a translation termination codon.
    Nucleic Acids Res. 1985 Jan 25;13(2):415-33 PMID: 2987795
  14. A different genetic code in human mitochondria.
    Nature. 1979 Nov 8;282(5735):189-94 PMID: 226894
  15. Codon reading patterns in Saccharomyces cerevisiae mitochondria based on sequences of mitochondrial tRNAs.
    FEBS Lett. 1986 Jan 1;194(1):131-8 PMID: 2416594
  16. Location and nucleotide sequence of two tRNA genes and a tRNA pseudo-gene in the maize mitochondrial genome: evidence for the transcription of a chloroplast gene in mitochondria.
    Curr Genet. 1988 Mar;13(3):247-54 PMID: 3383270
  17. The ribosomal protein gene cluster of Mycoplasma capricolum.
    Mol Gen Genet. 1987 Dec;210(2):314-22 PMID: 3481422
  18. Silent nucleotide substitutions and G + C content of some mitochondrial and bacterial genes.
    J Mol Evol. 1986;24(1-2):39-44 PMID: 3104617
  19. A novel lysine-substituted nucleoside in the first position of the anticodon of minor isoleucine tRNA from Escherichia coli.
    J Biol Chem. 1988 Jul 5;263(19):9261-7 PMID: 3132458
  20. Deviation from the universal code shown by the gene for surface protein 51A in Paramecium.
    Nature. 1985 Mar 14-20;314(6007):188-90 PMID: 3974722
  21. Clustering of tRNA genes in Paracentrotus lividus mitochondrial DNA.
    Curr Genet. 1988;13(1):91-6 PMID: 2834108
  22. Directional mutation pressure and neutral molecular evolution.
    Proc Natl Acad Sci U S A. 1988 Apr;85(8):2653-7 PMID: 3357886
  23. Origin and evolution of organisms as deduced from 5S ribosomal RNA sequences.
    Mol Biol Evol. 1987 Sep;4(5):445-72 PMID: 2452957
  24. Divergence and directional mutation pressures.
    Nature. 1987 Feb 19-25;325(6106):668 PMID: 3821860
  25. UGA is read as tryptophan in Mycoplasma capricolum.
    Proc Natl Acad Sci U S A. 1985 Apr;82(8):2306-9 PMID: 3887399
  26. Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.
    Gene. 1987;56(2-3):219-30 PMID: 3678836
  27. Evolutionary dynamics of tryptophan tRNAs in Mycoplasma capricolum.
    Mol Gen Genet. 1988 May;212(2):364-9 PMID: 3405203
  28. Organization and codon usage of the streptomycin operon in Micrococcus luteus, a bacterium with a high genomic G + C content.
    J Bacteriol. 1987 Oct;169(10):4770-7 PMID: 3654584
  29. An unusual genetic code in nuclear genes of Tetrahymena.
    Proc Natl Acad Sci U S A. 1985 Apr;82(8):2452-5 PMID: 3921962
  30. Does Paramecium primaurelia use a different genetic code in its macronucleus?
    Nature. 1985 Mar 14-20;314(6007):185-8 PMID: 3974721
  31. Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3159-63 PMID: 6447871
  32. Molecular mechanism of codon recognition by tRNA species with modified uridine in the first position of the anticodon.
    Proc Natl Acad Sci U S A. 1985 Aug;82(15):4905-9 PMID: 3860833
  33. Codon--anticodon pairing: the wobble hypothesis.
    J Mol Biol. 1966 Aug;19(2):548-55 PMID: 5969078
  34. Nucleotide sequence of a wheat mitochondrial glutamine tRNA gene.
    Nucleic Acids Res. 1988 Feb 11;16(3):1210 PMID: 3344212
  35. The watermelon mitochondrial URF-1 gene: evidence for a complex structure.
    Curr Genet. 1986;10(11):857-69 PMID: 3447741
  36. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification.
    Nature. 1988 Nov 10;336(6195):179-81 PMID: 3054566
  37. Cytochrome oxidase subunit II gene in mitochondria of Oenothera has no intron.
    EMBO J. 1983;2(12):2173-8 PMID: 16453484
  38. Biogenesis of mitochondria: the mitochondrial gene (aap1) coding for mitochondrial ATPase subunit 8 in Saccharomyces cerevisiae.
    Nucleic Acids Res. 1983 Jul 11;11(13):4435-51 PMID: 6223276
  39. The guanine and cytosine content of genomic DNA and bacterial evolution.
    Proc Natl Acad Sci U S A. 1987 Jan;84(1):166-9 PMID: 3467347
  40. A glycine tRNA gene from lupine mitochondria.
    Nucleic Acids Res. 1986 Mar 11;14(5):2407 PMID: 3453103
  41. A change in the genetic code in Mycoplasma capricolum.
    J Mol Evol. 1985;22(4):361-2 PMID: 3936937
  42. The mitochondrial DNA molecular of Drosophila yakuba: nucleotide sequence, gene organization, and genetic code.
    J Mol Evol. 1985;22(3):252-71 PMID: 3001325
  43. Natural variation in the genetic code.
    Annu Rev Genet. 1987;21:67-91 PMID: 3327473
  44. Codon recognition rules in yeast mitochondria.
    Proc Natl Acad Sci U S A. 1980 Jun;77(6):3167-70 PMID: 6997870
  45. Dramatic events in ciliate evolution: alteration of UAA and UAG termination codons to glutamine codons due to anticodon mutations in two Tetrahymena tRNAs.
    EMBO J. 1986 Jun;5(6):1307-11 PMID: 16453685
  46. Evolution of the amino acid code: inferences from mitochondrial codes.
    J Mol Evol. 1983;19(3-4):219-25 PMID: 6887264
  47. Sequence and codon recognition of bean mitochondria and chloroplast tRNAsTrp: evidence for a high degree of homology.
    Nucleic Acids Res. 1985 Jun 25;13(12):4411-6 PMID: 3847869
  48. Structure and evolution of organelle genomes.
    Microbiol Rev. 1982 Jun;46(2):208-40 PMID: 6750346
Article Info
Journal
Journal of molecular evolution
Abbr.
J Mol Evol
ISSN
0022-2844
Published
1989-04-00
Pages
271-8
Language
English
Region
Germany
NLM ID
0360051
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: [email protected]